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rtg-tools: 3.12.1 -> 3.13 (#412178)

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Gaétan Lepage 2025-05-31 00:19:57 +02:00 • committed by GitHub
commit b5bbb1bb4a
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1 changed files with 3 additions and 4 deletions
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7
pkgs/by-name/rt/rtg-tools/package.nix
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@ -13,13 +13,13 @@
stdenv.mkDerivation rec { stdenv.mkDerivation rec {
pname = "rtg-tools"; pname = "rtg-tools";
version = "3.12.1"; version = "3.13";
src = fetchFromGitHub { src = fetchFromGitHub {
owner = "RealTimeGenomics"; owner = "RealTimeGenomics";
repo = "rtg-tools"; repo = "rtg-tools";
rev = version; rev = version;
hash = "sha256-fMrrjrgaGxBVxn6qMq2g0oFv6qtfhZcQlkvv1E9Os6Y="; hash = "sha256-vPzKrgnX6BCQmn9aOVWWpFLC6SbPBHZhZ+oL1LCbvmo=";
}; };
nativeBuildInputs = [ nativeBuildInputs = [
@ -47,12 +47,11 @@ stdenv.mkDerivation rec {
# Use a location outside nix (must be writable) # Use a location outside nix (must be writable)
substituteInPlace installer/rtg \ substituteInPlace installer/rtg \
--replace-fail '$THIS_DIR/rtg.cfg' '$HOME/.config/rtg-tools/rtg.cfg' \ --replace-fail '$THIS_DIR/rtg.cfg' '$HOME/.config/rtg-tools/rtg.cfg' \
--replace-fail 'RTG_JAVA="java"' 'RTG_JAVA="${jdk}/lib/opendk/bin/java"' \ --replace-fail 'RTG_JAVA="java"' 'RTG_JAVA="${lib.getExe jdk}"' \
--replace-fail uname ${lib.getExe' coreutils "uname"} \ --replace-fail uname ${lib.getExe' coreutils "uname"} \
--replace-fail awk ${lib.getExe gawk} \ --replace-fail awk ${lib.getExe gawk} \
--replace-fail "hostname -s" "${lib.getExe hostname} -s" --replace-fail "hostname -s" "${lib.getExe hostname} -s"
sed -i '/USER_JAVA_OPTS=$RTG_JAVA_OPTS/a mkdir -p $HOME/.config/rtg-tools' installer/rtg sed -i '/USER_JAVA_OPTS=$RTG_JAVA_OPTS/a mkdir -p $HOME/.config/rtg-tools' installer/rtg
''; '';