From 7cb100b6833e020d4a4b25c3766cfde507e763e6 Mon Sep 17 00:00:00 2001
From: Nikita Uvarov <uv.nikita@gmail.com>
Date: Fri, 23 Aug 2019 12:12:17 +0200
Subject: [PATCH 001/152] nixos-container: use systemd-run instead of nsenter

This is the first step for unprivileged nixos containers support.
Fixes #30019. See also #18825, #57083, and #67130.
---
 .../virtualization/nixos-container/nixos-container.pl     | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/tools/virtualization/nixos-container/nixos-container.pl b/pkgs/tools/virtualization/nixos-container/nixos-container.pl
index b5ceb522e230..2a9625501b65 100755
--- a/pkgs/tools/virtualization/nixos-container/nixos-container.pl
+++ b/pkgs/tools/virtualization/nixos-container/nixos-container.pl
@@ -9,7 +9,6 @@ use Getopt::Long qw(:config gnu_getopt);
 use Cwd 'abs_path';
 use Time::HiRes;
 
-my $nsenter = "@utillinux@/bin/nsenter";
 my $su = "@su@";
 
 # Ensure a consistent umask.
@@ -270,9 +269,10 @@ sub restartContainer {
 # Run a command in the container.
 sub runInContainer {
     my @args = @_;
-    my $leader = getLeader;
-    exec($nsenter, "-t", $leader, "-m", "-u", "-i", "-n", "-p", "--", @args);
-    die "cannot run ‘nsenter’: $!\n";
+
+    exec("systemd-run", "--machine", $containerName, "--pty", "--quiet", "--", @args);
+
+    die "cannot run ‘systemd-run’: $!\n";
 }
 
 # Remove a directory while recursively unmounting all mounted filesystems within

From 908ecd5cb7b1f770dcf8a82778f93fcbdb7da990 Mon Sep 17 00:00:00 2001
From: Daniel Schaefer <git@danielschaefer.me>
Date: Sun, 25 Aug 2019 00:32:21 +0200
Subject: [PATCH 002/152] chipsec: 1.3.7 -> 1.4.0

---
 pkgs/tools/security/chipsec/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/tools/security/chipsec/default.nix b/pkgs/tools/security/chipsec/default.nix
index a32752f8b231..f403aaaf687a 100644
--- a/pkgs/tools/security/chipsec/default.nix
+++ b/pkgs/tools/security/chipsec/default.nix
@@ -1,14 +1,14 @@
-{ stdenv, lib, fetchFromGitHub, python27Packages, nasm, libelf
+{ stdenv, lib, fetchFromGitHub, pythonPackages, nasm, libelf
 , kernel ? null, withDriver ? false }:
-python27Packages.buildPythonApplication rec {
+pythonPackages.buildPythonApplication rec {
   name = "chipsec-${version}";
-  version = "1.3.7";
+  version = "1.4.0";
 
   src = fetchFromGitHub {
     owner = "chipsec";
     repo = "chipsec";
     rev = version;
-    sha256 = "00hwhi5f24y429zazhm77l1pp31q7fmx7ks3sfm6d16v89zbcp9a";
+    sha256 = "09ipr0vls1l2wln4z3dc9vx0zp63ps3dxkwlpm9rqqbpg7qq6lrp";
   };
 
   nativeBuildInputs = [

From b4044a3f2a56b95e76e8091a8e5d9c52fa24a3b6 Mon Sep 17 00:00:00 2001
From: Daniel Schaefer <git@danielschaefer.me>
Date: Sat, 6 Jul 2019 03:57:53 +0200
Subject: [PATCH 003/152] networkmanager: Allow NetworkManager and wireless
 together

When NetworkManager is configured to not manage all interfaces, it's
perfectly fine to have the rest be managed by the standard nixos
wireless scripts.

I use
  networking.networkmanager.unmanaged = [
    "*" "except:type:wwan" "except:type:gsm"
  ];
to control everything using networking.wireless except for the mobile
LTE modem which only works with NetworkManager.
---
 .../services/networking/networkmanager.nix    | 27 +++++++++++--------
 1 file changed, 16 insertions(+), 11 deletions(-)

diff --git a/nixos/modules/services/networking/networkmanager.nix b/nixos/modules/services/networking/networkmanager.nix
index 551636a33d25..a0c0d6c4b5fa 100644
--- a/nixos/modules/services/networking/networkmanager.nix
+++ b/nixos/modules/services/networking/networkmanager.nix
@@ -8,6 +8,8 @@ let
   dynamicHostsEnabled =
     cfg.dynamicHosts.enable && cfg.dynamicHosts.hostsDirs != {};
 
+  delegateWireless = config.networking.wireless.enable == true && cfg.unmanaged != [];
+
   # /var/lib/misc is for dnsmasq.leases.
   stateDirs = "/var/lib/NetworkManager /var/lib/dhclient /var/lib/misc";
 
@@ -177,10 +179,11 @@ in {
       basePackages = mkOption {
         type = types.attrsOf types.package;
         default = { inherit (pkgs)
-                            networkmanager modemmanager wpa_supplicant crda
+                            networkmanager modemmanager crda
                             networkmanager-openvpn networkmanager-vpnc
                             networkmanager-openconnect networkmanager-fortisslvpn
-                            networkmanager-l2tp networkmanager-iodine; };
+                            networkmanager-l2tp networkmanager-iodine; }
+                  // optionalAttrs (!delegateWireless) { inherit (pkgs) wpa_supplicant; };
         internal = true;
       };
 
@@ -377,8 +380,11 @@ in {
   config = mkIf cfg.enable {
 
     assertions = [
-      { assertion = config.networking.wireless.enable == false;
-        message = "You can not use networking.networkmanager with networking.wireless";
+      { assertion = config.networking.wireless.enable == true -> cfg.unmanaged != [];
+        message = ''
+          You can not use networking.networkmanager with networking.wireless.
+          Except if you mark some interfaces as <literal>unmanaged</literal> by NetworkManager.
+        '';
       }
       { assertion = !dynamicHostsEnabled || (dynamicHostsEnabled && cfg.dns == "dnsmasq");
         message = ''
@@ -491,18 +497,17 @@ in {
       path = [ pkgs.iproute pkgs.utillinux pkgs.coreutils ];
     };
 
-    # Turn off NixOS' network management
-    networking = {
+    # Turn off NixOS' network management when networking is managed entirely by NetworkManager
+    networking = (mkIf (!delegateWireless) {
       useDHCP = false;
-      # use mkDefault to trigger the assertion about the conflict above
+      # Use mkDefault to trigger the assertion about the conflict above
       wireless.enable = mkDefault false;
-    };
+    }) // (mkIf cfg.enableStrongSwan {
+      networkmanager.packages = [ pkgs.networkmanager_strongswan ];
+    });
 
     security.polkit.extraConfig = polkitConf;
 
-    networking.networkmanager.packages =
-      mkIf cfg.enableStrongSwan [ pkgs.networkmanager_strongswan ];
-
     services.dbus.packages =
       optional cfg.enableStrongSwan pkgs.strongswanNM ++ cfg.packages;
 

From 5c22c8ba9413405c5f923b3c97825d6542df0372 Mon Sep 17 00:00:00 2001
From: MetaDark <kira.bruneau@gmail.com>
Date: Wed, 21 Aug 2019 16:56:11 -0400
Subject: [PATCH 004/152] ccls: 0.20190314.1 -> 0.20190823

---
 pkgs/development/tools/misc/ccls/default.nix | 10 +++++-----
 pkgs/top-level/all-packages.nix              |  4 ++--
 2 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/pkgs/development/tools/misc/ccls/default.nix b/pkgs/development/tools/misc/ccls/default.nix
index f643ecab69d6..775879440ab4 100644
--- a/pkgs/development/tools/misc/ccls/default.nix
+++ b/pkgs/development/tools/misc/ccls/default.nix
@@ -1,22 +1,22 @@
-{ stdenv, fetchFromGitHub, makeWrapper
+{ stdenv, fetchFromGitHub
 , cmake, llvmPackages, rapidjson, runtimeShell }:
 
 stdenv.mkDerivation rec {
   name    = "ccls-${version}";
-  version = "0.20190314.1";
+  version = "0.20190823";
 
   src = fetchFromGitHub {
     owner = "MaskRay";
     repo = "ccls";
     rev = version;
-    sha256 = "1yvxliryqx2bc7r6ri4iafbrjx19jk8hnfbvq5xla72q0gqb97lf";
+    sha256 = "1qy1kf83mrvbhwl8m0h7ralwd3sid8y8fpk7pmy81y1nq8f1cf6f";
   };
 
-  nativeBuildInputs = [ cmake makeWrapper ];
+  nativeBuildInputs = [ cmake ];
   buildInputs = with llvmPackages; [ clang-unwrapped llvm rapidjson ];
 
   cmakeFlags = [
-    "-DSYSTEM_CLANG=ON"
+    "-DCCLS_VERSION=${version}"
     "-DCMAKE_OSX_DEPLOYMENT_TARGET=10.12"
   ];
 
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index ee3a4f7d68ea..0d87259effc5 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -9374,8 +9374,8 @@ in
 
 
   ccls = callPackage ../development/tools/misc/ccls {
-    llvmPackages = llvmPackages_7;
-    stdenv = llvmPackages_7.stdenv;
+    llvmPackages = llvmPackages_8;
+    stdenv = llvmPackages_8.stdenv;
   };
 
   credstash = with python3Packages; toPythonApplication credstash;

From 3bf75ee4ccf6681b8ddadcca7c3b540f921eff26 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Fabian=20M=C3=B6ller?= <fabianm88@gmail.com>
Date: Sun, 1 Sep 2019 18:11:16 +0200
Subject: [PATCH 005/152] h11: add pytest5 compatability

---
 pkgs/development/python-modules/h11/default.nix | 10 +++++++++-
 1 file changed, 9 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/h11/default.nix b/pkgs/development/python-modules/h11/default.nix
index 42ebf1b81da7..f77c267d792c 100644
--- a/pkgs/development/python-modules/h11/default.nix
+++ b/pkgs/development/python-modules/h11/default.nix
@@ -1,4 +1,4 @@
-{ lib, buildPythonPackage, fetchPypi, pytest }:
+{ lib, buildPythonPackage, fetchPypi, pytest, fetchpatch }:
 
 buildPythonPackage rec {
   pname = "h11";
@@ -9,6 +9,14 @@ buildPythonPackage rec {
     sha256 = "1qfad70h59hya21vrzz8dqyyaiqhac0anl2dx3s3k80gpskvrm1k";
   };
 
+  patches = [
+    # pytest5 compatability
+    (fetchpatch {
+      url = https://github.com/python-hyper/h11/commit/241e220493a511a5f5a5d472cb88d72661a92ab1.patch;
+      sha256 = "1s3ipf9s41m1lksws3xv3j133q7jnjdqvmgk4sfnm8q7li2dww39";
+    })
+  ];
+
   checkInputs = [ pytest ];
 
   checkPhase = ''

From 86ddab8e70a93453b8875471db4769cf0ff07b9d Mon Sep 17 00:00:00 2001
From: Daniel Schaefer <git@danielschaefer.me>
Date: Fri, 14 Jun 2019 13:50:10 +0200
Subject: [PATCH 006/152] hpmyroom: init at 11.1.0.0508

---
 .../networking/hpmyroom/default.nix           | 58 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 2 files changed, 60 insertions(+)
 create mode 100644 pkgs/applications/networking/hpmyroom/default.nix

diff --git a/pkgs/applications/networking/hpmyroom/default.nix b/pkgs/applications/networking/hpmyroom/default.nix
new file mode 100644
index 000000000000..b0f21f6f7e0b
--- /dev/null
+++ b/pkgs/applications/networking/hpmyroom/default.nix
@@ -0,0 +1,58 @@
+{ mkDerivation, stdenv, lib, fetchurl, rpmextract, autoPatchelfHook , libuuid
+, libXtst, libXfixes, glib, gst_all_1, alsaLib, freetype, fontconfig , libXext
+, libGL, libpng, libXScrnSaver, libxcb, xorg, libpulseaudio, libdrm
+}:
+mkDerivation rec {
+  pname = "hpmyroom";
+  version = "11.1.0.0508";
+
+  src = fetchurl {
+    url = "https://www.myroom.hpe.com/downloadfiles/${pname}-${version}.x86_64.rpm";
+    sha256 = "1j7mzvf349yxb42m8syh73gpvil01hy1a2wrr0rdzb2ijfnkxyaa";
+  };
+
+  nativeBuildInputs = [
+    rpmextract autoPatchelfHook
+  ];
+
+  buildInputs = [
+    libuuid libXtst libXScrnSaver libXfixes alsaLib freetype fontconfig libXext
+    libGL libpng libxcb libpulseaudio libdrm
+    glib  # For libgobject
+    stdenv.cc.cc  # For libstdc++
+    xorg.libX11
+  ] ++ (with gst_all_1; [ gstreamer gst-plugins-base ]);
+
+  unpackPhase = ''
+    rpmextract $src
+  '';
+
+  installPhase = ''
+    runHook preInstall
+
+    mv usr $out
+
+    runHook postInstall
+  '';
+
+  qtWrapperArgs = [
+    "--prefix QT_XKB_CONFIG_ROOT : '${xorg.xkeyboardconfig}/share/X11/xkb'"
+  ];
+
+  postFixup = ''
+    substituteInPlace $out/share/applications/HP-myroom.desktop \
+      --replace /usr/bin/hpmyroom hpmyroom \
+      --replace Icon=/usr/share/hpmyroom/Resources/MyRoom.png Icon=$out/share/hpmyroom/Resources/MyRoom.png
+
+    ln -s ${libpng}/lib/libpng.so $out/lib/hpmyroom/libpng15.so.15
+  '';
+
+  meta = {
+    description = "Client for HPE's MyRoom web conferencing solution";
+    maintainers = with lib.maintainers; [ johnazoidberg ];
+    license = lib.licenses.unfree;
+    homepage = "https://myroom.hpe.com";
+    # TODO: A Darwin binary is available upstream
+    platforms = [ "x86_64-linux" ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 69734fb117f6..a6e29590b01b 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -18816,6 +18816,8 @@ in
 
   hpl = callPackage ../tools/misc/hpl { mpi = openmpi; };
 
+  hpmyroom = libsForQt5.callPackage ../applications/networking/hpmyroom { };
+
   ht = callPackage ../applications/editors/ht { };
 
   hubstaff = callPackage ../applications/misc/hubstaff { };

From f0779e4497842b7a0306c7ae1e63d84d5ddbae75 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Tue, 3 Sep 2019 19:37:37 -0500
Subject: [PATCH 007/152] ell: 0.21 -> 0.22

---
 pkgs/os-specific/linux/ell/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/ell/default.nix b/pkgs/os-specific/linux/ell/default.nix
index b10d45d8a4b6..223a9b7bf794 100644
--- a/pkgs/os-specific/linux/ell/default.nix
+++ b/pkgs/os-specific/linux/ell/default.nix
@@ -7,14 +7,14 @@
 
 stdenv.mkDerivation rec {
   pname = "ell";
-  version = "0.21";
+  version = "0.22";
 
   outputs = [ "out" "dev" ];
 
   src = fetchgit {
      url = "https://git.kernel.org/pub/scm/libs/${pname}/${pname}.git";
      rev = version;
-     sha256 = "0m7fk2xgzsz7am0wjw98sqa42zpw3cz3hz399niw5rj8dbqh0zpy";
+     sha256 = "0dk4j1b8sy4j6w91cq5ga99f3hln9fgh79ayi9kvn8xgzksmhjdp";
   };
 
   patches = [

From 545d58a1ef8abb5a493654a84b9d6a3ca87a7909 Mon Sep 17 00:00:00 2001
From: Julien Langlois <yourstruly@julienlanglois.me>
Date: Mon, 22 Apr 2019 21:47:19 -0400
Subject: [PATCH 008/152] chromium: fix widevine

This change allows widevine to work in chromium (it was previously
broken due to a segfault). Newer versions of chromium do not use the
libwidevinecdmadapter.so. Instead, libwidevinecdm.so should be installed
in the chromium libExec directory.
---
 .../networking/browsers/chromium/browser.nix  | 50 +++++++++++++---
 .../networking/browsers/chromium/default.nix  | 12 +---
 .../browsers/chromium/patches/widevine.patch  | 34 ++++++-----
 .../networking/browsers/chromium/plugins.nix  | 58 +------------------
 4 files changed, 68 insertions(+), 86 deletions(-)

diff --git a/pkgs/applications/networking/browsers/chromium/browser.nix b/pkgs/applications/networking/browsers/chromium/browser.nix
index 8bdb33ed5d22..e41c3b777f86 100644
--- a/pkgs/applications/networking/browsers/chromium/browser.nix
+++ b/pkgs/applications/networking/browsers/chromium/browser.nix
@@ -1,8 +1,47 @@
-{ stdenv, mkChromiumDerivation, channel }:
+{ stdenv, mkChromiumDerivation, channel, upstream-info, gcc, glib, nspr, nss, patchelfUnstable, enableWideVine }:
 
 with stdenv.lib;
 
-mkChromiumDerivation (base: rec {
+let
+  mkrpath = p: "${makeSearchPathOutput "lib" "lib64" p}:${makeLibraryPath p}";
+  widevine = stdenv.mkDerivation {
+    name = "chromium-binary-plugin-widevine";
+
+    src = upstream-info.binary;
+
+    nativeBuildInputs = [ patchelfUnstable ];
+
+    phases = [ "unpackPhase" "patchPhase" "installPhase" "checkPhase" ];
+
+    unpackCmd = let
+      chan = if upstream-info.channel == "dev"    then "chrome-unstable"
+        else if upstream-info.channel == "stable" then "chrome"
+        else "chrome-${upstream-info.channel}";
+    in ''
+      mkdir -p plugins
+      ar p "$src" data.tar.xz | tar xJ -C plugins --strip-components=4 \
+        ./opt/google/${chan}/libwidevinecdm.so
+    '';
+
+    doCheck = true;
+    checkPhase = ''
+      ! find -iname '*.so' -exec ldd {} + | grep 'not found'
+    '';
+
+    PATCH_RPATH = mkrpath [ gcc.cc glib nspr nss ];
+
+    patchPhase = ''
+      patchelf --set-rpath "$PATCH_RPATH" libwidevinecdm.so
+    '';
+
+    installPhase = ''
+      install -vD libwidevinecdm.so \
+        "$out/lib/libwidevinecdm.so"
+    '';
+
+    meta.platforms = platforms.x86_64;
+  };
+in mkChromiumDerivation (base: rec {
   name = "chromium-browser";
   packageName = "chromium";
   buildTargets = [ "mksnapshot" "chrome_sandbox" "chrome" ];
@@ -18,11 +57,6 @@ mkChromiumDerivation (base: rec {
     cp -vLR "$buildPath/locales" "$buildPath/resources" "$libExecPath/"
     cp -v "$buildPath/chrome" "$libExecPath/$packageName"
 
-    if [ -e "$buildPath/libwidevinecdmadapter.so" ]; then
-      cp -v "$buildPath/libwidevinecdmadapter.so" \
-            "$libExecPath/libwidevinecdmadapter.so"
-    fi
-
     mkdir -p "$sandbox/bin"
     cp -v "$buildPath/chrome_sandbox" "$sandbox/bin/${sandboxExecutableName}"
 
@@ -57,6 +91,8 @@ mkChromiumDerivation (base: rec {
       -e '/\[Desktop Entry\]/a\' \
       -e 'StartupWMClass=chromium-browser' \
       $out/share/applications/chromium-browser.desktop
+
+    ${optionalString enableWideVine "ln -s ${widevine}/lib/libwidevinecdm.so \"$libExecPath/libwidevinecdm.so\""}
   '';
 
   passthru = { inherit sandboxExecutableName; };
diff --git a/pkgs/applications/networking/browsers/chromium/default.nix b/pkgs/applications/networking/browsers/chromium/default.nix
index 3178e2595fc5..b88772bbd318 100644
--- a/pkgs/applications/networking/browsers/chromium/default.nix
+++ b/pkgs/applications/networking/browsers/chromium/default.nix
@@ -38,10 +38,10 @@ in let
               enableWideVine;
     };
 
-    browser = callPackage ./browser.nix { inherit channel; };
+    browser = callPackage ./browser.nix { inherit channel enableWideVine; };
 
     plugins = callPackage ./plugins.nix {
-      inherit enablePepperFlash enableWideVine;
+      inherit enablePepperFlash;
     };
   };
 
@@ -113,13 +113,7 @@ in stdenv.mkDerivation {
   '';
 
   inherit (chromium.browser) packageName;
-  meta = chromium.browser.meta // {
-    broken = if enableWideVine then
-          builtins.trace "WARNING: WideVine is not functional, please only use for testing"
-             true
-        else false;
-  };
-
+  meta = chromium.browser.meta;
   passthru = {
     inherit (chromium) upstream-info browser;
     mkDerivation = chromium.mkChromiumDerivation;
diff --git a/pkgs/applications/networking/browsers/chromium/patches/widevine.patch b/pkgs/applications/networking/browsers/chromium/patches/widevine.patch
index 90a13928e3bd..2de6024141d7 100644
--- a/pkgs/applications/networking/browsers/chromium/patches/widevine.patch
+++ b/pkgs/applications/networking/browsers/chromium/patches/widevine.patch
@@ -1,16 +1,24 @@
-Minimal WideVine patch from Gentoo:
+Description: enable widevine and set its version string to "undefined"
+Author: Michael Gilbert <mgilbert@debian.org>
+Author: Olivier Tilloy <olivier.tilloy@canonical.com>
 
-https://gitweb.gentoo.org/repo/gentoo.git/tree/www-client/chromium/files/chromium-widevine-r1.patch
-
-BTS: https://bugs.gentoo.org/show_bug.cgi?id=547630
-
---- a/third_party/widevine/cdm/stub/widevine_cdm_version.h
-+++ b/third_party/widevine/cdm/stub/widevine_cdm_version.h
-@@ -10,6 +10,7 @@
- 
- #include "third_party/widevine/cdm/widevine_cdm_common.h"
- 
-+#define WIDEVINE_CDM_VERSION_STRING "unknown"
- #define WIDEVINE_CDM_AVAILABLE
+--- a/third_party/widevine/cdm/widevine_cdm_version.h
++++ b/third_party/widevine/cdm/widevine_cdm_version.h
+@@ -11,5 +11,6 @@
+ // If the Widevine CDM is available define the following:
+ //  - WIDEVINE_CDM_VERSION_STRING (with the version of the CDM that's available
+ //    as a string, e.g., "1.0.123.456").
++#define WIDEVINE_CDM_VERSION_STRING "undefined"
  
  #endif  // WIDEVINE_CDM_VERSION_H_
+--- a/chrome/common/chrome_content_client.cc
++++ b/chrome/common/chrome_content_client.cc
+@@ -99,7 +99,7 @@
+ // Registers Widevine CDM if Widevine is enabled, the Widevine CDM is
+ // bundled and not a component. When the Widevine CDM is a component, it is
+ // registered in widevine_cdm_component_installer.cc.
+-#if BUILDFLAG(BUNDLE_WIDEVINE_CDM) && !BUILDFLAG(ENABLE_WIDEVINE_CDM_COMPONENT)
++#if !BUILDFLAG(ENABLE_WIDEVINE_CDM_COMPONENT)
+ #define REGISTER_BUNDLED_WIDEVINE_CDM
+ #include "third_party/widevine/cdm/widevine_cdm_common.h"  // nogncheck
+ // TODO(crbug.com/663554): Needed for WIDEVINE_CDM_VERSION_STRING. Support
diff --git a/pkgs/applications/networking/browsers/chromium/plugins.nix b/pkgs/applications/networking/browsers/chromium/plugins.nix
index a0ea67133c6f..9cf264151af5 100644
--- a/pkgs/applications/networking/browsers/chromium/plugins.nix
+++ b/pkgs/applications/networking/browsers/chromium/plugins.nix
@@ -6,7 +6,6 @@
 , fetchzip
 , patchelfUnstable
 , enablePepperFlash ? false
-, enableWideVine ? false
 
 , upstream-info
 }:
@@ -44,60 +43,6 @@ let
     echo ${toString quoted} > "''$${output}/nix-support/wrapper-flags"
   '';
 
-  widevine = stdenv.mkDerivation {
-    name = "chromium-binary-plugin-widevine";
-
-    src = upstream-info.binary;
-
-    nativeBuildInputs = [ patchelfUnstable ];
-
-    phases = [ "unpackPhase" "patchPhase" "installPhase" "checkPhase" ];
-
-    unpackCmd = let
-      chan = if upstream-info.channel == "dev"    then "chrome-unstable"
-        else if upstream-info.channel == "stable" then "chrome"
-        else "chrome-${upstream-info.channel}";
-    in ''
-      mkdir -p plugins
-      ar p "$src" data.tar.xz | tar xJ -C plugins --strip-components=4 \
-        ./opt/google/${chan}/libwidevinecdm.so \
-        ./opt/google/${chan}/libwidevinecdmadapter.so
-    '';
-
-    doCheck = true;
-    checkPhase = ''
-      ! find -iname '*.so' -exec ldd {} + | grep 'not found'
-    '';
-
-    PATCH_RPATH = mkrpath [ gcc.cc glib nspr nss ];
-
-    patchPhase = ''
-      chmod +x libwidevinecdm.so libwidevinecdmadapter.so
-      patchelf --set-rpath "$PATCH_RPATH" libwidevinecdm.so
-      patchelf --set-rpath "$out/lib:$PATCH_RPATH" libwidevinecdmadapter.so
-    '';
-
-    installPhase = let
-      wvName = "Widevine Content Decryption Module";
-      wvDescription = "Playback of encrypted HTML audio/video content";
-      wvMimeTypes = "application/x-ppapi-widevine-cdm";
-      wvModule = "@out@/lib/libwidevinecdmadapter.so";
-      wvInfo = "#${wvName}#${wvDescription};${wvMimeTypes}";
-    in ''
-      install -vD libwidevinecdm.so \
-        "$out/lib/libwidevinecdm.so"
-      install -vD libwidevinecdmadapter.so \
-        "$out/lib/libwidevinecdmadapter.so"
-
-      ${mkPluginInfo {
-        flags = [ "--register-pepper-plugins=${wvModule}${wvInfo}" ];
-        envVars.NIX_CHROMIUM_PLUGIN_PATH_WIDEVINE = "@out@/lib";
-      }}
-    '';
-
-    meta.platforms = platforms.x86_64;
-  };
-
   flash = stdenv.mkDerivation rec {
     pname = "flashplayer-ppapi";
     version = "32.0.0.238";
@@ -140,6 +85,5 @@ let
   };
 
 in {
-  enabled = optional enableWideVine widevine
-         ++ optional enablePepperFlash flash;
+  enabled = optional enablePepperFlash flash;
 }

From aeeb67bfcb3f3d8ad0d5e22cf0c7a5c4acfa17ae Mon Sep 17 00:00:00 2001
From: Julien Langlois <yourstruly@julienlanglois.me>
Date: Sat, 10 Aug 2019 19:09:55 -0400
Subject: [PATCH 009/152] Rework to avoid a full rebuild for widevine.

---
 .../networking/browsers/chromium/browser.nix  | 45 +-------------
 .../networking/browsers/chromium/common.nix   |  6 +-
 .../networking/browsers/chromium/default.nix  | 58 +++++++++++++++++--
 3 files changed, 59 insertions(+), 50 deletions(-)

diff --git a/pkgs/applications/networking/browsers/chromium/browser.nix b/pkgs/applications/networking/browsers/chromium/browser.nix
index e41c3b777f86..29fdb1177337 100644
--- a/pkgs/applications/networking/browsers/chromium/browser.nix
+++ b/pkgs/applications/networking/browsers/chromium/browser.nix
@@ -1,47 +1,8 @@
-{ stdenv, mkChromiumDerivation, channel, upstream-info, gcc, glib, nspr, nss, patchelfUnstable, enableWideVine }:
+{ stdenv, mkChromiumDerivation, channel }:
 
 with stdenv.lib;
 
-let
-  mkrpath = p: "${makeSearchPathOutput "lib" "lib64" p}:${makeLibraryPath p}";
-  widevine = stdenv.mkDerivation {
-    name = "chromium-binary-plugin-widevine";
-
-    src = upstream-info.binary;
-
-    nativeBuildInputs = [ patchelfUnstable ];
-
-    phases = [ "unpackPhase" "patchPhase" "installPhase" "checkPhase" ];
-
-    unpackCmd = let
-      chan = if upstream-info.channel == "dev"    then "chrome-unstable"
-        else if upstream-info.channel == "stable" then "chrome"
-        else "chrome-${upstream-info.channel}";
-    in ''
-      mkdir -p plugins
-      ar p "$src" data.tar.xz | tar xJ -C plugins --strip-components=4 \
-        ./opt/google/${chan}/libwidevinecdm.so
-    '';
-
-    doCheck = true;
-    checkPhase = ''
-      ! find -iname '*.so' -exec ldd {} + | grep 'not found'
-    '';
-
-    PATCH_RPATH = mkrpath [ gcc.cc glib nspr nss ];
-
-    patchPhase = ''
-      patchelf --set-rpath "$PATCH_RPATH" libwidevinecdm.so
-    '';
-
-    installPhase = ''
-      install -vD libwidevinecdm.so \
-        "$out/lib/libwidevinecdm.so"
-    '';
-
-    meta.platforms = platforms.x86_64;
-  };
-in mkChromiumDerivation (base: rec {
+mkChromiumDerivation (base: rec {
   name = "chromium-browser";
   packageName = "chromium";
   buildTargets = [ "mksnapshot" "chrome_sandbox" "chrome" ];
@@ -91,8 +52,6 @@ in mkChromiumDerivation (base: rec {
       -e '/\[Desktop Entry\]/a\' \
       -e 'StartupWMClass=chromium-browser' \
       $out/share/applications/chromium-browser.desktop
-
-    ${optionalString enableWideVine "ln -s ${widevine}/lib/libwidevinecdm.so \"$libExecPath/libwidevinecdm.so\""}
   '';
 
   passthru = { inherit sandboxExecutableName; };
diff --git a/pkgs/applications/networking/browsers/chromium/common.nix b/pkgs/applications/networking/browsers/chromium/common.nix
index 45c125985120..552d3fa65f4a 100644
--- a/pkgs/applications/networking/browsers/chromium/common.nix
+++ b/pkgs/applications/networking/browsers/chromium/common.nix
@@ -24,7 +24,6 @@
 
 # package customization
 , enableNaCl ? false
-, enableWideVine ? false
 , useVaapi ? false
 , gnomeSupport ? false, gnome ? null
 , gnomeKeyringSupport ? false, libgnome-keyring3 ? null
@@ -133,11 +132,12 @@ let
       ++ optional pulseSupport libpulseaudio
       ++ optional (versionAtLeast version "72") jdk.jre;
 
-    patches = optional enableWideVine ./patches/widevine.patch ++ [
+    patches = [
       ./patches/nix_plugin_paths_68.patch
       ./patches/remove-webp-include-69.patch
       ./patches/jumbo-sorted.patch
       ./patches/no-build-timestamps.patch
+      ./patches/widevine.patch
 
       # Unfortunately, chromium regularly breaks on major updates and
       # then needs various patches backported in order to be compiled with GCC.
@@ -245,7 +245,7 @@ let
       use_gnome_keyring = gnomeKeyringSupport;
       use_gio = gnomeSupport;
       enable_nacl = enableNaCl;
-      enable_widevine = enableWideVine;
+      enable_widevine = true;
       use_cups = cupsSupport;
 
       treat_warnings_as_errors = false;
diff --git a/pkgs/applications/networking/browsers/chromium/default.nix b/pkgs/applications/networking/browsers/chromium/default.nix
index b88772bbd318..0296021f74cd 100644
--- a/pkgs/applications/networking/browsers/chromium/default.nix
+++ b/pkgs/applications/networking/browsers/chromium/default.nix
@@ -2,6 +2,8 @@
 , makeWrapper, ed
 , glib, gtk3, gnome3, gsettings-desktop-schemas
 , libva ? null
+, gcc, nspr, nss, patchelfUnstable, runCommand
+, lib
 
 # package customization
 , channel ? "stable"
@@ -34,23 +36,71 @@ in let
     mkChromiumDerivation = callPackage ./common.nix {
       inherit enableNaCl gnomeSupport gnome
               gnomeKeyringSupport proprietaryCodecs cupsSupport pulseSupport
-              useVaapi
-              enableWideVine;
+              useVaapi;
     };
 
-    browser = callPackage ./browser.nix { inherit channel enableWideVine; };
+    browser = callPackage ./browser.nix { inherit channel; };
 
     plugins = callPackage ./plugins.nix {
       inherit enablePepperFlash;
     };
   };
 
+  mkrpath = p: "${lib.makeSearchPathOutput "lib" "lib64" p}:${lib.makeLibraryPath p}";
+  widevine = let upstream-info = chromium.upstream-info; in stdenv.mkDerivation {
+    name = "chromium-binary-plugin-widevine";
+
+    src = upstream-info.binary;
+
+    nativeBuildInputs = [ patchelfUnstable ];
+
+    phases = [ "unpackPhase" "patchPhase" "installPhase" "checkPhase" ];
+
+    unpackCmd = let
+      chan = if upstream-info.channel == "dev"    then "chrome-unstable"
+        else if upstream-info.channel == "stable" then "chrome"
+        else "chrome-${upstream-info.channel}";
+    in ''
+      mkdir -p plugins
+      ar p "$src" data.tar.xz | tar xJ -C plugins --strip-components=4 \
+        ./opt/google/${chan}/libwidevinecdm.so
+    '';
+
+    doCheck = true;
+    checkPhase = ''
+      ! find -iname '*.so' -exec ldd {} + | grep 'not found'
+    '';
+
+    PATCH_RPATH = mkrpath [ gcc.cc glib nspr nss ];
+
+    patchPhase = ''
+      patchelf --set-rpath "$PATCH_RPATH" libwidevinecdm.so
+    '';
+
+    installPhase = ''
+      install -vD libwidevinecdm.so \
+        "$out/lib/libwidevinecdm.so"
+    '';
+
+    meta.platforms = lib.platforms.x86_64;
+  };
+
   suffix = if channel != "stable" then "-" + channel else "";
 
   sandboxExecutableName = chromium.browser.passthru.sandboxExecutableName;
 
   version = chromium.browser.version;
 
+  chromiumWV = let browser = chromium.browser; in if enableWideVine then
+    runCommand (browser.name + "-wv") { version = browser.version; }
+      ''
+        mkdir -p $out
+        cp -R ${browser}/* $out/
+        chmod u+w $out/libexec/chromium*
+        cp ${widevine}/lib/libwidevinecdm.so $out/libexec/chromium/
+        # patchelf?
+      ''
+    else browser;
 in stdenv.mkDerivation {
   name = "chromium${suffix}-${version}";
   inherit version;
@@ -68,7 +118,7 @@ in stdenv.mkDerivation {
   outputs = ["out" "sandbox"];
 
   buildCommand = let
-    browserBinary = "${chromium.browser}/libexec/chromium/chromium";
+    browserBinary = "${chromiumWV}/libexec/chromium/chromium";
     getWrapperFlags = plugin: "$(< \"${plugin}/nix-support/wrapper-flags\")";
     libPath = stdenv.lib.makeLibraryPath ([]
       ++ stdenv.lib.optional useVaapi libva

From c28eb26100e212e65440ca133373eba9fc330adf Mon Sep 17 00:00:00 2001
From: Julien Langlois <yourstruly@julienlanglois.me>
Date: Thu, 5 Sep 2019 17:27:04 -0400
Subject: [PATCH 010/152] Set package to unfree when widevine is enabled.

---
 pkgs/applications/networking/browsers/chromium/browser.nix | 4 ++--
 pkgs/applications/networking/browsers/chromium/default.nix | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/networking/browsers/chromium/browser.nix b/pkgs/applications/networking/browsers/chromium/browser.nix
index 29fdb1177337..ad7fa78527cd 100644
--- a/pkgs/applications/networking/browsers/chromium/browser.nix
+++ b/pkgs/applications/networking/browsers/chromium/browser.nix
@@ -1,4 +1,4 @@
-{ stdenv, mkChromiumDerivation, channel }:
+{ stdenv, mkChromiumDerivation, channel, enableWideVine }:
 
 with stdenv.lib;
 
@@ -62,7 +62,7 @@ mkChromiumDerivation (base: rec {
     description = "An open source web browser from Google";
     homepage = http://www.chromium.org/;
     maintainers = with maintainers; [ bendlas ivan ];
-    license = licenses.bsd3;
+    license = if enableWideVine then licenses.unfree else licenses.bsd3;
     platforms = platforms.linux;
     hydraPlatforms = if channel == "stable" then ["aarch64-linux" "x86_64-linux"] else [];
     timeout = 172800; # 48 hours
diff --git a/pkgs/applications/networking/browsers/chromium/default.nix b/pkgs/applications/networking/browsers/chromium/default.nix
index 0296021f74cd..6270d4c8dc19 100644
--- a/pkgs/applications/networking/browsers/chromium/default.nix
+++ b/pkgs/applications/networking/browsers/chromium/default.nix
@@ -39,7 +39,7 @@ in let
               useVaapi;
     };
 
-    browser = callPackage ./browser.nix { inherit channel; };
+    browser = callPackage ./browser.nix { inherit channel enableWideVine; };
 
     plugins = callPackage ./plugins.nix {
       inherit enablePepperFlash;

From ea7c012e4bdd8e7a105960c92a0380fb812e84c0 Mon Sep 17 00:00:00 2001
From: Julien Langlois <yourstruly@julienlanglois.me>
Date: Thu, 5 Sep 2019 17:43:58 -0400
Subject: [PATCH 011/152] Explicitly check for channels in widevine plugin
 unpack command.

---
 pkgs/applications/networking/browsers/chromium/default.nix | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pkgs/applications/networking/browsers/chromium/default.nix b/pkgs/applications/networking/browsers/chromium/default.nix
index 6270d4c8dc19..a5baa69bcfa7 100644
--- a/pkgs/applications/networking/browsers/chromium/default.nix
+++ b/pkgs/applications/networking/browsers/chromium/default.nix
@@ -59,7 +59,8 @@ in let
     unpackCmd = let
       chan = if upstream-info.channel == "dev"    then "chrome-unstable"
         else if upstream-info.channel == "stable" then "chrome"
-        else "chrome-${upstream-info.channel}";
+        else if upstream-info.channel == "beta" then "chrome-beta"
+        else throw "Unknown chromium channel.";
     in ''
       mkdir -p plugins
       ar p "$src" data.tar.xz | tar xJ -C plugins --strip-components=4 \

From 97390d648dbfedb28269e6db1255a2b03ad19440 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Dani=C3=ABl=20de=20Kok?= <me@danieldk.eu>
Date: Fri, 30 Aug 2019 17:37:58 +0200
Subject: [PATCH 012/152] softmaker-office: init at 970

---
 .../office/softmaker/desktop_items.nix        | 42 ++++++++
 .../applications/office/softmaker/generic.nix | 95 +++++++++++++++++++
 .../office/softmaker/softmaker_office.nix     | 15 +++
 pkgs/top-level/all-packages.nix               |  2 +
 4 files changed, 154 insertions(+)
 create mode 100644 pkgs/applications/office/softmaker/desktop_items.nix
 create mode 100644 pkgs/applications/office/softmaker/generic.nix
 create mode 100644 pkgs/applications/office/softmaker/softmaker_office.nix

diff --git a/pkgs/applications/office/softmaker/desktop_items.nix b/pkgs/applications/office/softmaker/desktop_items.nix
new file mode 100644
index 000000000000..6975da064566
--- /dev/null
+++ b/pkgs/applications/office/softmaker/desktop_items.nix
@@ -0,0 +1,42 @@
+{ makeDesktopItem, pname, suiteName }:
+
+{
+  planmaker = makeDesktopItem {
+    name = "${pname}-planmaker";
+    desktopName = "${suiteName} PlanMaker";
+    icon = "${pname}-pml.png";
+    categories = "Application;Office;SpreadSheet;";
+    exec = "${pname}-planmaker %F";
+    mimeType = "application/x-pmd;application/x-pmdx;application/x-pmv;application/excel;application/x-excel;application/x-ms-excel;application/x-msexcel;application/x-sylk;application/x-xls;application/xls;application/vnd.ms-excel;application/vnd.stardivision.calc;application/vnd.openxmlformats-officedocument.spreadsheetml.sheet;application/vnd.openxmlformats-officedocument.spreadsheetml.template;application/vnd.ms-excel.sheet.macroenabled.12;application/vnd.openxmlformats-officedocument.spreadsheetml.template;application/vnd.ms-excel.template.macroEnabled.12;application/x-dif;text/spreadsheet;text/csv;application/x-prn;application/vnd.ms-excel.sheet.binary.macroenabled.12;";
+    extraEntries = ''
+      TryExec=${pname}-planmaker
+      StartupWMClass=pm
+    '';
+  };
+
+  presentations = makeDesktopItem {
+    name = "${pname}-presentations";
+    desktopName = "${suiteName} Presentations";
+    icon = "${pname}-prl.png";
+    categories = "Application;Office;Presentation;";
+    exec = "${pname}-presentations %F";
+    mimeType = "application/x-prdx;application/x-prvx;application/x-prsx;application/x-prd;application/x-prv;application/x-prs;application/ppt;application/mspowerpoint;application/vnd.ms-powerpoint;application/vnd.openxmlformats-officedocument.presentationml.presentation;application/vnd.ms-powerpoint.presentation.macroenabled.12;application/vnd.openxmlformats-officedocument.presentationml.template;application/vnd.ms-powerpoint.template.macroEnabled.12;application/vnd.ms-powerpoint.slideshow.macroenabled.12;application/vnd.openxmlformats-officedocument.presentationml.slideshow;";
+    extraEntries = ''
+      TryExec=${pname}-presentations
+      StartupWMClass=pr
+    '';
+  };
+
+  textmaker = makeDesktopItem {
+    name = "${pname}-textmaker";
+    desktopName = "${suiteName} TextMaker";
+    icon = "${pname}-tml.png";
+    categories = "Application;Office;WordProcessor;";
+    exec = "${pname}-textmaker %F";
+    mimeType = "application/x-tmdx;application/x-tmvx;application/x-tmd;application/x-tmv;application/msword;application/vnd.ms-word;application/x-doc;text/rtf;application/rtf;application/vnd.oasis.opendocument.text;application/vnd.oasis.opendocument.text-template;application/vnd.stardivision.writer;application/vnd.sun.xml.writer;application/vnd.sun.xml.writer.template;application/vnd.openxmlformats-officedocument.wordprocessingml.document;application/vnd.ms-word.document.macroenabled.12;application/vnd.openxmlformats-officedocument.wordprocessingml.template;application/vnd.ms-word.template.macroenabled.12;application/x-pocket-word;application/x-dbf;application/msword-template;";
+    extraEntries = ''
+      TryExec=${pname}-textmaker
+      StartupWMClass=tm
+    '';
+  };
+}
diff --git a/pkgs/applications/office/softmaker/generic.nix b/pkgs/applications/office/softmaker/generic.nix
new file mode 100644
index 000000000000..9505271db14c
--- /dev/null
+++ b/pkgs/applications/office/softmaker/generic.nix
@@ -0,0 +1,95 @@
+{ stdenv, fetchurl, autoPatchelfHook, makeDesktopItem, makeWrapper
+
+  # Dynamic Libraries
+, curl, libGL, libX11, libXext, libXmu, libXrandr, libXrender
+
+, pname, version, edition, suiteName, src, archive
+
+, ...
+}:
+
+let
+  desktopItems = import ./desktop_items.nix {
+    inherit makeDesktopItem pname suiteName;
+  };
+  shortEdition = builtins.substring 2 2 edition;
+in stdenv.mkDerivation rec {
+  inherit pname version edition shortEdition src;
+  nativeBuildInputs = [
+    autoPatchelfHook
+    makeWrapper
+  ];
+
+  buildInputs = [
+    curl
+    libGL
+    libX11
+    libXext
+    libXmu
+    libXrandr
+    libXrender
+    stdenv.cc.cc.lib
+  ];
+
+  dontBuild = true;
+  dontConfigure = true;
+
+  unpackPhase = ''
+    runHook preUnpack
+
+    mkdir installer
+    tar -C installer -xf ${src}
+    mkdir ${pname}
+    tar -C ${pname} -xf installer/${archive}
+
+    runHook postUnpack
+  '';
+
+  installPhase = ''
+    runHook preInstall
+
+    mkdir -p $out/share
+    cp -r ${pname} $out/share/${pname}${edition}
+
+    # Wrap rather than symlinking, so that the programs can determine
+    # their resource path.
+    mkdir -p $out/bin
+    makeWrapper $out/share/${pname}${edition}/planmaker $out/bin/${pname}-planmaker
+    makeWrapper $out/share/${pname}${edition}/presentations $out/bin/${pname}-presentations
+    makeWrapper $out/share/${pname}${edition}/textmaker $out/bin/${pname}-textmaker
+
+    for size in 16 32 48 64 96 128 256 512 1024; do
+      mkdir -p $out/share/icons/hicolor/''${size}x''${size}/apps
+
+      for app in pml prl tml; do
+        ln -s $out/share/${pname}${edition}/icons/''${app}_''${size}.png \
+          $out/share/icons/hicolor/''${size}x''${size}/apps/${pname}-''${app}.png
+      done
+
+      mkdir -p $out/share/icons/hicolor/''${size}x''${size}/mimetypes
+
+      for mimetype in pmd prd tmd; do
+        ln -s $out/share/${pname}${edition}/icons/''${mimetype}_''${size}.png \
+          $out/share/icons/hicolor/''${size}x''${size}/mimetypes/application-x-''${mimetype}.png
+      done
+    done
+
+    # Add desktop items
+    ${desktopItems.planmaker.buildCommand}
+    ${desktopItems.presentations.buildCommand}
+    ${desktopItems.textmaker.buildCommand}
+
+    # Add mime types
+    install -D -t $out/share/mime/packages ${pname}/mime/softmaker-*office*${shortEdition}.xml
+
+    runHook postInstall
+  '';
+
+  meta = with stdenv.lib; {
+    description = "An office suite with a word processor, spreadsheet and presentation program";
+    homepage = "https://www.softmaker.com/";
+    license = licenses.unfree;
+    maintainers = with maintainers; [ danieldk ];
+    platforms = [ "x86_64-linux" ];
+  };
+}
diff --git a/pkgs/applications/office/softmaker/softmaker_office.nix b/pkgs/applications/office/softmaker/softmaker_office.nix
new file mode 100644
index 000000000000..26fe420d6a3b
--- /dev/null
+++ b/pkgs/applications/office/softmaker/softmaker_office.nix
@@ -0,0 +1,15 @@
+{ callPackage, fetchurl, ... } @ args:
+
+callPackage ./generic.nix (args // rec {
+  pname = "softmaker-office";
+  version = "970";
+  edition = "2018";
+  suiteName = "SoftMaker Office";
+
+  src = fetchurl {
+    url = "https://www.softmaker.net/down/softmaker-office-${edition}-${version}-amd64.tgz";
+    sha256 = "14f94p1jms41s2iz5sa770rcyfp4mv01r6jjjis9amx37zrc8yid";
+  };
+
+  archive = "office${edition}.tar.lzma";
+})
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 5d6b8037de79..c8fa38358f07 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -19686,6 +19686,8 @@ in
 
   smtube = libsForQt5.callPackage ../applications/video/smtube {};
 
+  softmaker-office = callPackage ../applications/office/softmaker/softmaker_office.nix {};
+
   stride = callPackage ../applications/networking/instant-messengers/stride { };
 
   sudolikeaboss = callPackage ../tools/security/sudolikeaboss { };

From 11184dee46a4dfe99aeff8015f24b1ba571bd471 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Dani=C3=ABl=20de=20Kok?= <me@danieldk.eu>
Date: Fri, 30 Aug 2019 17:41:27 +0200
Subject: [PATCH 013/152] freeoffice: init at 966

---
 pkgs/applications/office/softmaker/freeoffice.nix | 15 +++++++++++++++
 pkgs/top-level/all-packages.nix                   |  2 ++
 2 files changed, 17 insertions(+)
 create mode 100644 pkgs/applications/office/softmaker/freeoffice.nix

diff --git a/pkgs/applications/office/softmaker/freeoffice.nix b/pkgs/applications/office/softmaker/freeoffice.nix
new file mode 100644
index 000000000000..d0e6c73e3531
--- /dev/null
+++ b/pkgs/applications/office/softmaker/freeoffice.nix
@@ -0,0 +1,15 @@
+{ callPackage, fetchurl, ... } @ args:
+
+callPackage ./generic.nix (args // rec {
+  pname = "freeoffice";
+  version = "966";
+  edition = "2018";
+  suiteName = "FreeOffice";
+
+  src = fetchurl {
+    url = "https://www.softmaker.net/down/softmaker-freeoffice-${version}-amd64.tgz";
+    sha256 = "18s92d2pmhmd56sb9c1zirwxzfgpqd8wh11bl0zi6g6skn68zhx4";
+  };
+
+  archive = "freeoffice${edition}.tar.lzma";
+})
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index c8fa38358f07..3e6f7b30928e 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -18423,6 +18423,8 @@ in
 
   freenet = callPackage ../applications/networking/p2p/freenet { };
 
+  freeoffice = callPackage ../applications/office/softmaker/freeoffice.nix {};
+
   freepv = callPackage ../applications/graphics/freepv { };
 
   xfontsel = callPackage ../applications/misc/xfontsel { };

From accc62a98c8b1728af748057c8ac97b02edef8b9 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Dani=C3=ABl=20de=20Kok?= <me@danieldk.eu>
Date: Fri, 6 Sep 2019 16:33:02 +0200
Subject: [PATCH 014/152] freeoffice: 966 -> 970

Changes:

- Adds support for saving documents to the DOC, XLS, and PPT formats.
- TextMaker adds support for saving to the OpenDocument format.
- Adds a dark mode.
---
 pkgs/applications/office/softmaker/freeoffice.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/office/softmaker/freeoffice.nix b/pkgs/applications/office/softmaker/freeoffice.nix
index d0e6c73e3531..f3e37943bb66 100644
--- a/pkgs/applications/office/softmaker/freeoffice.nix
+++ b/pkgs/applications/office/softmaker/freeoffice.nix
@@ -2,13 +2,13 @@
 
 callPackage ./generic.nix (args // rec {
   pname = "freeoffice";
-  version = "966";
+  version = "970";
   edition = "2018";
   suiteName = "FreeOffice";
 
   src = fetchurl {
     url = "https://www.softmaker.net/down/softmaker-freeoffice-${version}-amd64.tgz";
-    sha256 = "18s92d2pmhmd56sb9c1zirwxzfgpqd8wh11bl0zi6g6skn68zhx4";
+    sha256 = "1maibr4x8mksb32ixvyy2rjn4x9f51191p5fcdj5qwz32pf8h2dr";
   };
 
   archive = "freeoffice${edition}.tar.lzma";

From 7d9578819bcdb18216ce2ed66a4176592bbbb0bd Mon Sep 17 00:00:00 2001
From: Julien Langlois <yourstruly@julienlanglois.me>
Date: Fri, 6 Sep 2019 15:19:49 -0400
Subject: [PATCH 015/152] Comment about handling widevine in default.nix.

---
 pkgs/applications/networking/browsers/chromium/default.nix | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/pkgs/applications/networking/browsers/chromium/default.nix b/pkgs/applications/networking/browsers/chromium/default.nix
index a5baa69bcfa7..f099ddbff737 100644
--- a/pkgs/applications/networking/browsers/chromium/default.nix
+++ b/pkgs/applications/networking/browsers/chromium/default.nix
@@ -92,6 +92,10 @@ in let
 
   version = chromium.browser.version;
 
+  # This is here because we want to add the widevine shared object at the last
+  # minute in order to avoid a full rebuild of chromium. Additionally, this
+  # isn't in `browser.nix` so we can avoid having to re-expose attributes of
+  # the chromium derivation (see above: we introspect `sandboxExecutableName`).
   chromiumWV = let browser = chromium.browser; in if enableWideVine then
     runCommand (browser.name + "-wv") { version = browser.version; }
       ''

From b898c262c1ac38d9b19c22cc07a4f6f9267cfd20 Mon Sep 17 00:00:00 2001
From: Maximilian Bosch <maximilian@mbosch.me>
Date: Sun, 8 Sep 2019 01:25:25 +0200
Subject: [PATCH 016/152] hydra: 2019-05-06 -> 2019-08-30

---
 pkgs/development/tools/misc/hydra/default.nix | 19 ++++++-------------
 1 file changed, 6 insertions(+), 13 deletions(-)

diff --git a/pkgs/development/tools/misc/hydra/default.nix b/pkgs/development/tools/misc/hydra/default.nix
index 0d50c772bdee..4a65d0888347 100644
--- a/pkgs/development/tools/misc/hydra/default.nix
+++ b/pkgs/development/tools/misc/hydra/default.nix
@@ -1,9 +1,9 @@
-{ stdenv, nix, perlPackages, buildEnv, releaseTools, fetchFromGitHub
+{ stdenv, nix, perlPackages, buildEnv, fetchFromGitHub
 , makeWrapper, autoconf, automake, libtool, unzip, pkgconfig, sqlite, libpqxx
 , gitAndTools, mercurial, darcs, subversion, bazaar, openssl, bzip2, libxslt
 , guile, perl, postgresql, nukeReferences, git, boehmgc, nlohmann_json
 , docbook_xsl, openssh, gnused, coreutils, findutils, gzip, lzma, gnutar
-, rpm, dpkg, cdrkit, pixz, lib, fetchpatch, boost, autoreconfHook
+, rpm, dpkg, cdrkit, pixz, lib, boost, autoreconfHook
 }:
 
 with stdenv;
@@ -67,17 +67,17 @@ let
         boehmgc
       ];
   };
-in releaseTools.nixBuild rec {
+in stdenv.mkDerivation rec {
   pname = "hydra";
-  version = "2019-05-06";
+  version = "2019-08-30";
 
   inherit stdenv;
 
   src = fetchFromGitHub {
     owner = "NixOS";
     repo = pname;
-    rev = "ff64583d07f046e378a6be596ec0ce7a9e2b7472";
-    sha256 = "0w88q0saz7si22z3ryim6vdrv9qkwn6l25xfmiapvh5qrnrrdcb9";
+    rev = "242b8b7a314759ed33f69205d26a1b7c337511e0";
+    sha256 = "167ijcf9qdm10kjvqax3hcvs5mpa4mx2y2i9idwwc6xfvn8fhs84";
   };
 
   buildInputs =
@@ -97,13 +97,6 @@ in releaseTools.nixBuild rec {
 
   nativeBuildInputs = [ autoreconfHook pkgconfig ];
 
-  patches = [
-    (fetchpatch {
-      url = "https://github.com/NixOS/hydra/pull/648/commits/4171ab4c4fd576c516dc03ba64d1c7945f769af0.patch";
-      sha256 = "1fxa2459kdws6qc419dv4084c1ssmys7kqg4ic7n643kybamsgrx";
-    })
-  ];
-
   configureFlags = [ "--with-docbook-xsl=${docbook_xsl}/xml/xsl/docbook" ];
 
   NIX_CFLAGS_COMPILE = [ "-pthread" ];

From fe2b80c2d3710ec0ed75f90865249a3d10a91f0d Mon Sep 17 00:00:00 2001
From: Daniel Fullmer <danielrf12@gmail.com>
Date: Sun, 8 Sep 2019 19:38:07 -0400
Subject: [PATCH 017/152] rclone: 1.49.1 -> 1.49.2

---
 pkgs/applications/networking/sync/rclone/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/sync/rclone/default.nix b/pkgs/applications/networking/sync/rclone/default.nix
index 52527f79303f..3e93dcc44405 100644
--- a/pkgs/applications/networking/sync/rclone/default.nix
+++ b/pkgs/applications/networking/sync/rclone/default.nix
@@ -2,13 +2,13 @@
 
 buildGoModule rec {
   pname = "rclone";
-  version = "1.49.1";
+  version = "1.49.2";
 
   src = fetchFromGitHub {
     owner = pname;
     repo = pname;
     rev = "v${version}";
-    sha256 = "0mjwp1j70dqa8k3zxhcnw85ddhagkpr7c59mv8kradv6mqqzmq9c";
+    sha256 = "1a90fr7cw78qhwdgkjwshap345jk1ipm3nnk7xf3nayiyibvk5dg";
   };
 
   modSha256 = "158mpmy8q67dk1ks9p926n1670gsk7rhd0vpjh44f4g64ddnhk03";

From 7881e0bcbea94f5a915da2c9298c0bcb59cca247 Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Wed, 18 Apr 2018 15:15:24 +0800
Subject: [PATCH 018/152] wmic-bin: add at 0.5.0

---
 pkgs/servers/monitoring/plugins/wmic-bin.nix | 46 ++++++++++++++++++++
 pkgs/top-level/all-packages.nix              |  2 +
 2 files changed, 48 insertions(+)
 create mode 100644 pkgs/servers/monitoring/plugins/wmic-bin.nix

diff --git a/pkgs/servers/monitoring/plugins/wmic-bin.nix b/pkgs/servers/monitoring/plugins/wmic-bin.nix
new file mode 100644
index 000000000000..c8f4eb77c468
--- /dev/null
+++ b/pkgs/servers/monitoring/plugins/wmic-bin.nix
@@ -0,0 +1,46 @@
+{ stdenv, lib, fetchFromGitHub, autoPatchelfHook, popt }:
+
+stdenv.mkDerivation rec {
+  pname = "wmic-bin";
+  version = "0.5.0";
+
+  src = fetchFromGitHub {
+    owner = "R-Vision";
+    repo = "wmi-client";
+    rev = version;
+    sha256 = "1w1mdbiwz37wzry1q38h8dyjaa6iggmsb9wcyhhlawwm1vj50w48";
+  };
+
+  buildInputs = [ popt ];
+
+  nativeBuildInputs = [ autoPatchelfHook ];
+
+  dontConfigure = true;
+  dontBuild = true;
+  doInstallCheck = true;
+
+  installPhase = ''
+    runHook preInstall
+
+    install -Dm755 bin/wmic_ubuntu_x64 $out/bin/wmic
+    install -Dm644 -t $out/share/doc/wmic LICENSE README.md
+
+    runHook postInstall
+  '';
+
+  installCheckPhase = ''
+    runHook preInstallCheck
+
+    $out/bin/wmic --help >/dev/null
+
+    runHook postInstallCheck
+  '';
+
+  meta = with stdenv.lib; {
+    description = "WMI client for Linux (binary)";
+    homepage    = "https://www.openvas.org";
+    license     = licenses.mit;
+    maintainers = with maintainers; [ peterhoeg ];
+    platforms   = [ "x86_64-linux" ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 1cab1ae328b0..f1f97e028715 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -24728,6 +24728,8 @@ in
 
   hy = callPackage ../development/interpreters/hy {};
 
+  wmic-bin = callPackage ../servers/monitoring/plugins/wmic-bin.nix { };
+
   check-uptime = callPackage ../servers/monitoring/plugins/uptime.nix { };
 
   ghc-standalone-archive = callPackage ../os-specific/darwin/ghc-standalone-archive { inherit (darwin) cctools; };

From 2338a5e6c349ff1181d4f5d57c60026f221a78e1 Mon Sep 17 00:00:00 2001
From: nyanloutre <paul@nyanlout.re>
Date: Mon, 9 Sep 2019 23:55:56 +0200
Subject: [PATCH 019/152] electron-cash: 4.0.7 -> 4.0.10

---
 pkgs/applications/misc/electron-cash/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/electron-cash/default.nix b/pkgs/applications/misc/electron-cash/default.nix
index 9607f428ab9e..913afd766d3d 100644
--- a/pkgs/applications/misc/electron-cash/default.nix
+++ b/pkgs/applications/misc/electron-cash/default.nix
@@ -2,13 +2,13 @@
 
 python3Packages.buildPythonApplication rec {
   pname = "electron-cash";
-  version = "4.0.7";
+  version = "4.0.10";
 
   src = fetchurl {
     url = "https://electroncash.org/downloads/${version}/win-linux/Electron-Cash-${version}.tar.gz";
     # Verified using official SHA-1 and signature from
     # https://github.com/fyookball/keys-n-hashes
-    sha256 = "d63ef2d52cff0b821b745067d752fd0c7f2902fa23eaf8e9392c54864cae5c77";
+    sha256 = "48270e12956a2f4ef4d2b0cb60611e47f136b734a3741dab176542a32ae59ee5";
   };
 
   propagatedBuildInputs = with python3Packages; [

From 5617881a42bd23eb58ae9538c7b9e4da2a128877 Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Mon, 9 Sep 2019 22:14:34 +0000
Subject: [PATCH 020/152] appleseed: fix build

---
 pkgs/tools/graphics/appleseed/default.nix | 11 ++++++++++-
 1 file changed, 10 insertions(+), 1 deletion(-)

diff --git a/pkgs/tools/graphics/appleseed/default.nix b/pkgs/tools/graphics/appleseed/default.nix
index 876861087201..d7603c42fca9 100644
--- a/pkgs/tools/graphics/appleseed/default.nix
+++ b/pkgs/tools/graphics/appleseed/default.nix
@@ -24,7 +24,16 @@ in stdenv.mkDerivation rec {
     osl seexpr makeWrapper
   ];
 
-  NIX_CFLAGS_COMPILE = "-I${openexr.dev}/include/OpenEXR -I${ilmbase.dev}/include/OpenEXR -I${openimageio.dev}/include/OpenImageIO -Wno-unused-but-set-variable";
+  NIX_CFLAGS_COMPILE = [
+    "-I${openexr.dev}/include/OpenEXR"
+    "-I${ilmbase.dev}/include/OpenEXR"
+    "-I${openimageio.dev}/include/OpenImageIO"
+
+    "-Wno-unused-but-set-variable"
+    "-Wno-error=class-memaccess"
+    "-Wno-error=maybe-uninitialized"
+    "-Wno-error=catch-value"
+  ];
 
   cmakeFlags = [
       "-DUSE_EXTERNAL_XERCES=ON" "-DUSE_EXTERNAL_OCIO=ON" "-DUSE_EXTERNAL_OIIO=ON"

From 42cf3e51784b9f83c54afa8051d45dc06d59ba9c Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Thu, 22 Mar 2018 11:32:29 +0100
Subject: [PATCH 021/152] gnome-multi-writer: init at 3.32.1

---
 .../misc/gnome-multi-writer/default.nix       | 62 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 2 files changed, 64 insertions(+)
 create mode 100644 pkgs/applications/misc/gnome-multi-writer/default.nix

diff --git a/pkgs/applications/misc/gnome-multi-writer/default.nix b/pkgs/applications/misc/gnome-multi-writer/default.nix
new file mode 100644
index 000000000000..11bfbaaacd07
--- /dev/null
+++ b/pkgs/applications/misc/gnome-multi-writer/default.nix
@@ -0,0 +1,62 @@
+{ stdenv
+, fetchurl
+, appstream-glib
+, desktop-file-utils
+, gettext
+, glib
+, gnome3
+, gtk3
+, gusb
+, libcanberra-gtk3
+, libgudev
+, meson
+, ninja
+, pkgconfig
+, wrapGAppsHook
+, polkit
+, udisks
+}:
+
+stdenv.mkDerivation rec {
+  pname = "gnome-multi-writer";
+  version = "3.32.1";
+
+  src = fetchurl {
+    url = "mirror://gnome/sources/${pname}/${stdenv.lib.versions.majorMinor version}/${pname}-${version}.tar.xz";
+    sha256 = "1apdd8yi12zagf82k376a9wmdm27wzwdxpm2wf2pnwkaf786rmdw";
+  };
+
+  nativeBuildInputs = [
+    appstream-glib
+    desktop-file-utils
+    gettext
+    meson
+    ninja
+    pkgconfig
+    wrapGAppsHook
+  ];
+
+  buildInputs = [
+    glib
+    gtk3
+    gusb
+    libcanberra-gtk3
+    libgudev
+    polkit
+    udisks
+  ];
+
+  passthru = {
+    updateScript = gnome3.updateScript {
+      packageName = pname;
+    };
+  };
+
+  meta = with stdenv.lib; {
+    description = "Tool for writing an ISO file to multiple USB devices at once";
+    homepage = https://wiki.gnome.org/Apps/MultiWriter;
+    license = licenses.gpl2Plus;
+    maintainers = gnome3.maintainers;
+    platforms = platforms.linux;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index ca37025f7f31..8cb74230b4ed 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -9589,6 +9589,8 @@ in
 
   gnome-latex = callPackage ../applications/editors/gnome-latex/default.nix { };
 
+  gnome-multi-writer = callPackage ../applications/misc/gnome-multi-writer {};
+
   gnome-online-accounts = callPackage ../development/libraries/gnome-online-accounts { };
 
   gnome-video-effects = callPackage ../development/libraries/gnome-video-effects { };

From cd67dd52d286f7e2c199e774089605b2e16f5187 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Fabian=20M=C3=B6ller?= <fabianm88@gmail.com>
Date: Thu, 12 Sep 2019 12:23:50 +0200
Subject: [PATCH 022/152] manuskript: fix build and use wrapQtApp

---
 pkgs/applications/editors/manuskript/default.nix | 10 +++++++++-
 pkgs/top-level/all-packages.nix                  |  2 +-
 2 files changed, 10 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/editors/manuskript/default.nix b/pkgs/applications/editors/manuskript/default.nix
index ecbe7e8b7194..a9d8ffec43ee 100644
--- a/pkgs/applications/editors/manuskript/default.nix
+++ b/pkgs/applications/editors/manuskript/default.nix
@@ -1,9 +1,11 @@
-{ stdenv, zlib, fetchFromGitHub, python3Packages }:
+{ stdenv, zlib, fetchFromGitHub, python3Packages, wrapQtAppsHook }:
 
 python3Packages.buildPythonApplication rec {
   pname = "manuskript";
   version = "0.9.0";
 
+  format = "other";
+
   src = fetchFromGitHub {
     repo = pname;
     owner = "olivierkes";
@@ -11,6 +13,8 @@ python3Packages.buildPythonApplication rec {
     sha256 = "13y1s0kba1ib6g977n7h920kyr7abdw03kpal512m7iwa9g2kdw8";
   };
 
+  nativeBuildInputs = [ wrapQtAppsHook ];
+
   propagatedBuildInputs = [
     python3Packages.pyqt5
     python3Packages.lxml
@@ -30,6 +34,10 @@ python3Packages.buildPythonApplication rec {
     cp -r sample-projects/ $out/share/${pname}
   '';
 
+  postFixup = ''
+    wrapQtApp $out/bin/manuskript
+  '';
+
   doCheck = false;
 
   meta = {
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index cb516caad813..b55357f83332 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -18453,7 +18453,7 @@ in
 
   m32edit = callPackage ../applications/audio/midas/m32edit.nix {};
 
-  manuskript = callPackage ../applications/editors/manuskript { };
+  manuskript = libsForQt5.callPackage ../applications/editors/manuskript { };
 
   manul = callPackage ../development/tools/manul { };
 

From c399d6d9bb6a8ad769546bd93a1d7a60fb2bbcac Mon Sep 17 00:00:00 2001
From: Michael Weiss <dev.primeos@gmail.com>
Date: Thu, 12 Sep 2019 20:58:54 +0200
Subject: [PATCH 023/152] fscrypt: unstable-2019-08-29 -> 0.2.5

---
 pkgs/os-specific/linux/fscrypt/default.nix |  8 +--
 pkgs/os-specific/linux/fscrypt/deps.nix    | 66 ----------------------
 2 files changed, 3 insertions(+), 71 deletions(-)
 delete mode 100644 pkgs/os-specific/linux/fscrypt/deps.nix

diff --git a/pkgs/os-specific/linux/fscrypt/default.nix b/pkgs/os-specific/linux/fscrypt/default.nix
index cdd42e98f06b..92594ea99de4 100644
--- a/pkgs/os-specific/linux/fscrypt/default.nix
+++ b/pkgs/os-specific/linux/fscrypt/default.nix
@@ -4,17 +4,15 @@
 
 buildGoPackage rec {
   pname = "fscrypt";
-  version = "unstable-2019-08-29";
+  version = "0.2.5";
 
   goPackagePath = "github.com/google/fscrypt";
 
-  goDeps = ./deps.nix;
-
   src = fetchFromGitHub {
     owner = "google";
     repo = "fscrypt";
-    rev = "8a3acda2011e9a080ee792c1e11646e6118a4930";
-    sha256 = "17h6r5lqiz0cw9vsixv48a1p78nd7bs1kncg6p4lfagl7kr5hpls";
+    rev = "v${version}";
+    sha256 = "1jf6363kc9id3ar93znlcglx3llgv01ccp3nlbamm98rm9dps4qk";
   };
 
   buildInputs = [ pam ];
diff --git a/pkgs/os-specific/linux/fscrypt/deps.nix b/pkgs/os-specific/linux/fscrypt/deps.nix
deleted file mode 100644
index 5d3e8a89a91f..000000000000
--- a/pkgs/os-specific/linux/fscrypt/deps.nix
+++ /dev/null
@@ -1,66 +0,0 @@
-# file generated from go.mod using vgo2nix (https://github.com/adisbladis/vgo2nix)
-[
-  {
-    goPackagePath = "github.com/golang/protobuf";
-    fetch = {
-      type = "git";
-      url = "https://github.com/golang/protobuf";
-      rev = "v1.2.0";
-      sha256 = "0kf4b59rcbb1cchfny2dm9jyznp8ri2hsb14n8iak1q8986xa0ab";
-    };
-  }
-  {
-    goPackagePath = "github.com/pkg/errors";
-    fetch = {
-      type = "git";
-      url = "https://github.com/pkg/errors";
-      rev = "v0.8.0";
-      sha256 = "001i6n71ghp2l6kdl3qq1v2vmghcz3kicv9a5wgcihrzigm75pp5";
-    };
-  }
-  {
-    goPackagePath = "github.com/urfave/cli";
-    fetch = {
-      type = "git";
-      url = "https://github.com/urfave/cli";
-      rev = "v1.20.0";
-      sha256 = "0y6f4sbzkiiwrxbl15biivj8c7qwxnvm3zl2dd3mw4wzg4x10ygj";
-    };
-  }
-  {
-    goPackagePath = "golang.org/x/crypto";
-    fetch = {
-      type = "git";
-      url = "https://go.googlesource.com/crypto";
-      rev = "614d502a4dac";
-      sha256 = "1rcyvsl8b8pk7h8lwl0fpiflrx8zs121wi5490ln0qnvkk8d4bwy";
-    };
-  }
-  {
-    goPackagePath = "golang.org/x/net";
-    fetch = {
-      type = "git";
-      url = "https://go.googlesource.com/net";
-      rev = "8a410e7b638d";
-      sha256 = "0hp0l8f6fir5gmgrjq0mhh5ikc0rlrm72774228800kfwqjrxxny";
-    };
-  }
-  {
-    goPackagePath = "golang.org/x/sync";
-    fetch = {
-      type = "git";
-      url = "https://go.googlesource.com/sync";
-      rev = "1d60e4601c6f";
-      sha256 = "046jlanz2lkxq1r57x9bl6s4cvfqaic6p2xybsj8mq1120jv4rs6";
-    };
-  }
-  {
-    goPackagePath = "golang.org/x/sys";
-    fetch = {
-      type = "git";
-      url = "https://go.googlesource.com/sys";
-      rev = "d99a578cf41b";
-      sha256 = "10q9xx4pmnq92qn6ff4xp7n1hx766wvw2rf7pqcd6rx5plgwz8cm";
-    };
-  }
-]

From 458e3c7116852f26df58f2047416c774c1d6141b Mon Sep 17 00:00:00 2001
From: Sebastian Wild <sebastian@wild-siena.com>
Date: Mon, 9 Sep 2019 22:05:49 +0200
Subject: [PATCH 024/152] melpaPackages.elpy: bugfix

After the elpy dummy package was removed (#68217) it was still referenced
in the melpa packages and broke emacs builds that included elpy.
---
 pkgs/applications/editors/emacs-modes/melpa-packages.nix | 4 ----
 pkgs/top-level/all-packages.nix                          | 1 -
 2 files changed, 5 deletions(-)

diff --git a/pkgs/applications/editors/emacs-modes/melpa-packages.nix b/pkgs/applications/editors/emacs-modes/melpa-packages.nix
index fe440c146ae8..838e57343c43 100644
--- a/pkgs/applications/editors/emacs-modes/melpa-packages.nix
+++ b/pkgs/applications/editors/emacs-modes/melpa-packages.nix
@@ -68,10 +68,6 @@ env NIXPKGS_ALLOW_BROKEN=1 nix-instantiate --show-trace ../../../../ -A emacsPac
           inherit (self.melpaPackages) easy-kill;
         };
 
-        elpy = super.elpy.overrideAttrs(old: {
-          propagatedUserEnvPkgs = old.propagatedUserEnvPkgs ++ [ external.elpy ];
-        });
-
         emacsql-sqlite = super.emacsql-sqlite.overrideAttrs(old: {
           buildInputs = old.buildInputs ++ [ pkgs.sqlite ];
 
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 3e7d7639ec13..03bf0ed75f09 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -17979,7 +17979,6 @@ in
     external = {
       inherit (haskellPackages)
         ghc-mod structured-haskell-mode Agda hindent;
-      inherit (pythonPackages) elpy;
       inherit
         autoconf automake editorconfig-core-c git libffi libpng pkgconfig
         poppler rtags w3m zlib substituteAll rustPlatform cmake llvmPackages

From ab0308604b93c3e81a330aa668c33ea9ece0bf5d Mon Sep 17 00:00:00 2001
From: zimbatm <zimbatm@zimbatm.com>
Date: Thu, 12 Sep 2019 22:02:26 +0200
Subject: [PATCH 025/152] cide: remove (#68505)

---
 .../tools/continuous-integration/cide/Gemfile |   6 -
 .../continuous-integration/cide/Gemfile.lock  |  40 -------
 .../continuous-integration/cide/default.nix   |  32 ------
 .../continuous-integration/cide/gemset.nix    | 103 ------------------
 pkgs/top-level/aliases.nix                    |   1 +
 pkgs/top-level/all-packages.nix               |   2 -
 6 files changed, 1 insertion(+), 183 deletions(-)
 delete mode 100644 pkgs/development/tools/continuous-integration/cide/Gemfile
 delete mode 100644 pkgs/development/tools/continuous-integration/cide/Gemfile.lock
 delete mode 100644 pkgs/development/tools/continuous-integration/cide/default.nix
 delete mode 100644 pkgs/development/tools/continuous-integration/cide/gemset.nix

diff --git a/pkgs/development/tools/continuous-integration/cide/Gemfile b/pkgs/development/tools/continuous-integration/cide/Gemfile
deleted file mode 100644
index 7e72ac0529d6..000000000000
--- a/pkgs/development/tools/continuous-integration/cide/Gemfile
+++ /dev/null
@@ -1,6 +0,0 @@
-source "https://rubygems.org"
-
-gem 'cide'
-
-# Optional dependency, only used by `cide upload`
-gem 'aws-sdk', '~> 2'
diff --git a/pkgs/development/tools/continuous-integration/cide/Gemfile.lock b/pkgs/development/tools/continuous-integration/cide/Gemfile.lock
deleted file mode 100644
index 736b2bfca1a2..000000000000
--- a/pkgs/development/tools/continuous-integration/cide/Gemfile.lock
+++ /dev/null
@@ -1,40 +0,0 @@
-GEM
-  remote: https://rubygems.org/
-  specs:
-    aws-sdk (2.2.17)
-      aws-sdk-resources (= 2.2.17)
-    aws-sdk-core (2.2.17)
-      jmespath (~> 1.0)
-    aws-sdk-resources (2.2.17)
-      aws-sdk-core (= 2.2.17)
-    axiom-types (0.1.1)
-      descendants_tracker (~> 0.0.4)
-      ice_nine (~> 0.11.0)
-      thread_safe (~> 0.3, >= 0.3.1)
-    cide (0.9.0)
-      thor (~> 0.19)
-      virtus (~> 1.0)
-    coercible (1.0.0)
-      descendants_tracker (~> 0.0.1)
-    descendants_tracker (0.0.4)
-      thread_safe (~> 0.3, >= 0.3.1)
-    equalizer (0.0.11)
-    ice_nine (0.11.2)
-    jmespath (1.1.3)
-    thor (0.19.1)
-    thread_safe (0.3.5)
-    virtus (1.0.5)
-      axiom-types (~> 0.1)
-      coercible (~> 1.0)
-      descendants_tracker (~> 0.0, >= 0.0.3)
-      equalizer (~> 0.0, >= 0.0.9)
-
-PLATFORMS
-  ruby
-
-DEPENDENCIES
-  aws-sdk (~> 2)
-  cide
-
-BUNDLED WITH
-   1.10.6
diff --git a/pkgs/development/tools/continuous-integration/cide/default.nix b/pkgs/development/tools/continuous-integration/cide/default.nix
deleted file mode 100644
index 75f175aae9cc..000000000000
--- a/pkgs/development/tools/continuous-integration/cide/default.nix
+++ /dev/null
@@ -1,32 +0,0 @@
-{ stdenv, lib, bundlerEnv, bundlerUpdateScript, makeWrapper, docker, git, gnutar, gzip }:
-
-stdenv.mkDerivation rec {
-  pname = "cide";
-  version = "0.9.0";
-
-  env = bundlerEnv {
-    name = "${pname}-${version}-gems";
-
-    gemdir = ./.;
-  };
-
-  phases = ["installPhase"];
-
-  buildInputs = [ makeWrapper ];
-
-  installPhase = ''
-    mkdir -p $out/bin
-    makeWrapper ${env}/bin/cide $out/bin/cide \
-      --set PATH ${stdenv.lib.makeBinPath [ docker git gnutar gzip ]}
-  '';
-
-  passthru.updateScript = bundlerUpdateScript "cide";
-
-  meta = with lib; {
-    description = "Isolated test runner with Docker";
-    homepage    = http://zimbatm.github.io/cide/;
-    license     = licenses.mit;
-    maintainers = with maintainers; [ zimbatm nicknovitski ];
-    platforms   = docker.meta.platforms;
-  };
-}
diff --git a/pkgs/development/tools/continuous-integration/cide/gemset.nix b/pkgs/development/tools/continuous-integration/cide/gemset.nix
deleted file mode 100644
index df8f7c9f2088..000000000000
--- a/pkgs/development/tools/continuous-integration/cide/gemset.nix
+++ /dev/null
@@ -1,103 +0,0 @@
-{
-  virtus = {
-    dependencies = ["axiom-types" "coercible" "descendants_tracker" "equalizer"];
-    source = {
-      sha256 = "06iphwi3c4f7y9i2rvhvaizfswqbaflilziz4dxqngrdysgkn1fk";
-      type = "gem";
-    };
-    version = "1.0.5";
-  };
-  thread_safe = {
-    source = {
-      sha256 = "1hq46wqsyylx5afkp6jmcihdpv4ynzzq9ygb6z2pb1cbz5js0gcr";
-      type = "gem";
-    };
-    version = "0.3.5";
-  };
-  thor = {
-    source = {
-      sha256 = "08p5gx18yrbnwc6xc0mxvsfaxzgy2y9i78xq7ds0qmdm67q39y4z";
-      type = "gem";
-    };
-    version = "0.19.1";
-  };
-  jmespath = {
-    source = {
-      remotes = ["https://rubygems.org"];
-      sha256 = "0vpvd61kc60f98jn28kw7x7vi82qrwgglam42nvzh98i43yxwsfb";
-      type = "gem";
-    };
-    version = "1.1.3";
-  };
-  ice_nine = {
-    source = {
-      remotes = ["https://rubygems.org"];
-      sha256 = "1nv35qg1rps9fsis28hz2cq2fx1i96795f91q4nmkm934xynll2x";
-      type = "gem";
-    };
-    version = "0.11.2";
-  };
-  equalizer = {
-    source = {
-      sha256 = "1kjmx3fygx8njxfrwcmn7clfhjhb6bvv3scy2lyyi0wqyi3brra4";
-      type = "gem";
-    };
-    version = "0.0.11";
-  };
-  descendants_tracker = {
-    dependencies = ["thread_safe"];
-    source = {
-      sha256 = "15q8g3fcqyb41qixn6cky0k3p86291y7xsh1jfd851dvrza1vi79";
-      type = "gem";
-    };
-    version = "0.0.4";
-  };
-  coercible = {
-    dependencies = ["descendants_tracker"];
-    source = {
-      sha256 = "1p5azydlsz0nkxmcq0i1gzmcfq02lgxc4as7wmf47j1c6ljav0ah";
-      type = "gem";
-    };
-    version = "1.0.0";
-  };
-  cide = {
-    version = "0.9.0";
-    source = {
-      type = "gem";
-      remotes = ["https://rubygems.org"];
-      sha256 = "1wykwv0jnrh49jm9zsy1cb5wddv65iw4ixh072hr242wb83dcyl0";
-    };
-  };
-  axiom-types = {
-    dependencies = ["descendants_tracker" "ice_nine" "thread_safe"];
-    source = {
-      sha256 = "10q3k04pll041mkgy0m5fn2b1lazm6ly1drdbcczl5p57lzi3zy1";
-      type = "gem";
-    };
-    version = "0.1.1";
-  };
-  aws-sdk-resources = {
-    source = {
-      remotes = ["https://rubygems.org"];
-      sha256 = "0vdnpjmil99n9d1fpk1w6ssgvmzx4wfmrqcij8nyd0iqdaacx3fj";
-      type = "gem";
-    };
-    version = "2.2.17";
-  };
-  aws-sdk-core = {
-    source = {
-      remotes = ["https://rubygems.org"];
-      sha256 = "1vq7ny5n3rdfzkdqdm76r48slmp2a5v7565llrl4bw5hb5k4p75z";
-      type = "gem";
-    };
-    version = "2.2.17";
-  };
-  aws-sdk = {
-    source = {
-      remotes = ["https://rubygems.org"];
-      sha256 = "1cwycrdk21blzjzf8fj1wlmdix94rj9aixj6phx6lwbqykn2dzx9";
-      type = "gem";
-    };
-    version = "2.2.17";
-  };
-}
\ No newline at end of file
diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix
index 74159f02d07f..ac88446242e1 100644
--- a/pkgs/top-level/aliases.nix
+++ b/pkgs/top-level/aliases.nix
@@ -56,6 +56,7 @@ mapAliases ({
   bundler_HEAD = bundler; # added 2015-11-15
   cantarell_fonts = cantarell-fonts; # added 2018-03-03
   checkbashism = checkbashisms; # added 2016-08-16
+  cide = throw "deprecated in 2019-09-11: abandoned by upstream";
   cifs_utils = cifs-utils; # added 2016-08
   ckb = ckb-next; # added 2018-10-21
   clangAnalyzer = clang-analyzer;  # added 2015-02-20
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 09dc9caafa61..44274ce08a42 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -9315,8 +9315,6 @@ in
 
   chruby = callPackage ../development/tools/misc/chruby { rubies = null; };
 
-  cide = callPackage ../development/tools/continuous-integration/cide { };
-
   cl-launch = callPackage ../development/tools/misc/cl-launch {};
 
   cloud-nuke = callPackage ../development/tools/cloud-nuke { };

From e849aadd62cc18123cf578b001bf7a75e76304f2 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Thu, 12 Sep 2019 22:33:44 +0100
Subject: [PATCH 026/152] dino: 2019-03-07 -> 2019-09-12

---
 .../networking/instant-messengers/dino/default.nix          | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/networking/instant-messengers/dino/default.nix b/pkgs/applications/networking/instant-messengers/dino/default.nix
index 8de098b85e78..e6e589944737 100644
--- a/pkgs/applications/networking/instant-messengers/dino/default.nix
+++ b/pkgs/applications/networking/instant-messengers/dino/default.nix
@@ -15,13 +15,13 @@
  }:
 
 stdenv.mkDerivation {
-  name = "dino-unstable-2019-03-07";
+  name = "dino-unstable-2019-09-12";
 
   src = fetchFromGitHub {
     owner = "dino";
     repo = "dino";
-    rev = "ff6caf241c4d57d3ef124a8b7c3144a09f320ea0";
-    sha256 = "1gjxfnywlypi3slvxb91b2mycrsqjinmafnkkngahyikr7gmqgnf";
+    rev = "c8f2b80978706c4c53deb7ddfb8188c751bcb291";
+    sha256 = "17lc6xiarb174g1hgjfh1yjrr0l2nzc3kba8xp5niwakbx7qicqr";
     fetchSubmodules = true;
   };
 

From beeaf5a5b130c031e56ba37ec37c2f8837f49d67 Mon Sep 17 00:00:00 2001
From: Aaron Andersen <aaron@fosslib.net>
Date: Thu, 12 Sep 2019 15:55:52 -0400
Subject: [PATCH 027/152] ike: fix broken build

Co-Authored-By: worldofpeace <worldofpeace@protonmail.ch>
---
 pkgs/applications/networking/ike/default.nix | 19 +++++++++++++++----
 pkgs/top-level/all-packages.nix              |  2 +-
 2 files changed, 16 insertions(+), 5 deletions(-)

diff --git a/pkgs/applications/networking/ike/default.nix b/pkgs/applications/networking/ike/default.nix
index 7953f35507d1..3baa1352a809 100644
--- a/pkgs/applications/networking/ike/default.nix
+++ b/pkgs/applications/networking/ike/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, cmake, openssl, libedit, flex, bison, qt4, makeWrapper
+{ stdenv, fetchurl, fetchpatch, cmake, openssl, libedit, flex, bison, qt4, makeWrapper
 , gcc, nettools, iproute, linuxHeaders }:
 
 # NOTE: use $out/etc/iked.conf as sample configuration and also set: dhcp_file "/etc/iked.dhcp";
@@ -8,14 +8,25 @@
 # so I'm sticking with 3.4
 
 stdenv.mkDerivation rec {
-  name = "ike-2.2.1";
+  pname = "ike";
+  version = "2.2.1";
 
   src = fetchurl {
-    url = "https://www.shrew.net/download/ike/${name}-release.tgz";
+    url = "https://www.shrew.net/download/ike/${pname}-${version}-release.tgz";
     sha256 = "0fhyr2psd93b0zf7yfb72q3nqnh65mymgq5jpjcsj9jv5kfr6l8y";
   };
 
-  buildInputs = [ cmake openssl libedit flex bison qt4 makeWrapper nettools iproute ];
+  patches = [
+    # required for openssl 1.1.x compatibility
+    (fetchpatch {
+      name = "openssl-1.1.0.patch";
+      url = "https://aur.archlinux.org/cgit/aur.git/plain/openssl-1.1.0.patch?h=ike&id=3a56735ddc26f750df4720f4baba0728bb4cb458";
+      sha256 = "1hw8q4xy858rivpjkq5288q3mc75d52bg4w3n30y99h05wik0h51";
+    })
+  ];
+
+  nativeBuildInputs = [ cmake flex bison makeWrapper ];
+  buildInputs = [ openssl libedit qt4 nettools iproute ];
 
   configurePhase = ''
     mkdir -p $out/{bin,sbin,lib}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 280041646b4f..2f3037378063 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -18778,7 +18778,7 @@ in
     stdenv = gccStdenv;
   };
 
-  ike = callPackage ../applications/networking/ike { };
+  ike = callPackage ../applications/networking/ike { bison = bison2; };
 
   ikiwiki = callPackage ../applications/misc/ikiwiki {
     inherit (perlPackages.override { pkgs = pkgs // { imagemagick = imagemagickBig;}; }) PerlMagick;

From 833baa746bbac9925f5591a709720d4a256a9cd3 Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Thu, 12 Sep 2019 18:53:18 -0400
Subject: [PATCH 028/152] oh-my-zsh: 2019-09-08 -> 2019-09-11

---
 pkgs/shells/zsh/oh-my-zsh/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/shells/zsh/oh-my-zsh/default.nix b/pkgs/shells/zsh/oh-my-zsh/default.nix
index d83a8a115ab1..8aa66d65fad3 100644
--- a/pkgs/shells/zsh/oh-my-zsh/default.nix
+++ b/pkgs/shells/zsh/oh-my-zsh/default.nix
@@ -4,13 +4,13 @@
 { stdenv, fetchgit }:
 
 stdenv.mkDerivation rec {
-  version = "2019-09-08";
+  version = "2019-09-11";
   pname = "oh-my-zsh";
-  rev = "fd4571d1b02ac68833a5b5c166395434723b9128";
+  rev = "ddd359dd668f448856438304bedfe952d1749efd";
 
   src = fetchgit { inherit rev;
     url = "https://github.com/robbyrussell/oh-my-zsh";
-    sha256 = "1294na7mb48xa5iifbsjvggiznglnydlnwhb1zqwrmdi84qhydri";
+    sha256 = "027f0si4ah8ppwypxip3ximkwbh4n9ghv7kip2cfj5h5nqlg786q";
   };
 
   pathsToLink = [ "/share/oh-my-zsh" ];

From 83aa6f5d7f540a088e79941e103bd85a2f0114af Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Thu, 12 Sep 2019 18:53:34 -0400
Subject: [PATCH 029/152] slack-theme-black: 2019-09-07 -> 2019-09-11

---
 .../networking/instant-messengers/slack/dark-theme.nix      | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/networking/instant-messengers/slack/dark-theme.nix b/pkgs/applications/networking/instant-messengers/slack/dark-theme.nix
index f36e32731be5..903d8e60d6d5 100644
--- a/pkgs/applications/networking/instant-messengers/slack/dark-theme.nix
+++ b/pkgs/applications/networking/instant-messengers/slack/dark-theme.nix
@@ -1,13 +1,13 @@
 { stdenv, fetchgit }:
 
 stdenv.mkDerivation rec {
-  rev = "779bf26f7d9754879fbc1e308fc35ee154fd4b97";
-  version = "2019-09-07";
+  rev = "f760176c6e133667ce73aeecba8b0c0eb8822941";
+  version = "2019-09-11";
   pname = "slack-theme-black";
 
   src = fetchgit { inherit rev;
     url = "https://github.com/laCour/slack-night-mode";
-    sha256 = "0p3wjwwchb0zw10rf5qlx7ffxryb42hixfrji36c57g1853qhw0f";
+    sha256 = "1kx8nx7mhrabs5wxqgvy86s5smy5hw49gv6yc95yxwx6ymwpgbzj";
   };
 
   dontUnpack = true;

From c33f5ad65b1f8ec6f4cc678ef0da2e6d76879992 Mon Sep 17 00:00:00 2001
From: Ben Sima <ben@bsima.me>
Date: Thu, 12 Sep 2019 16:43:15 -0700
Subject: [PATCH 030/152] protobuf: add license metadata

https://github.com/protocolbuffers/protobuf/blob/master/LICENSE

GitHub doesn't identify it as BSD-3, but it is if you just look at the
license text.
---
 pkgs/development/python-modules/protobuf/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/development/python-modules/protobuf/default.nix b/pkgs/development/python-modules/protobuf/default.nix
index fcd3d997dcd8..d5ff4b04c595 100644
--- a/pkgs/development/python-modules/protobuf/default.nix
+++ b/pkgs/development/python-modules/protobuf/default.nix
@@ -59,6 +59,7 @@ buildPythonPackage {
   meta = {
     description = "Protocol Buffers are Google's data interchange format";
     homepage = https://developers.google.com/protocol-buffers/;
+    license = licenses.bsd3;
   };
 
   passthru.protobuf = protobuf;

From 823c05e0e81e832aa0c8b189bb407cd305837c25 Mon Sep 17 00:00:00 2001
From: Aaron Andersen <aaron@fosslib.net>
Date: Thu, 12 Sep 2019 21:11:56 -0400
Subject: [PATCH 031/152] tvheadend: fix broken build

---
 pkgs/servers/tvheadend/default.nix | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/pkgs/servers/tvheadend/default.nix b/pkgs/servers/tvheadend/default.nix
index dd66259eed6f..7fad204a0189 100644
--- a/pkgs/servers/tvheadend/default.nix
+++ b/pkgs/servers/tvheadend/default.nix
@@ -25,6 +25,8 @@ in stdenv.mkDerivation {
 
   enableParallelBuilding = true;
 
+  NIX_CFLAGS_COMPILE = "-Wno-error=format-truncation";
+
   # disable dvbscan, as having it enabled causes a network download which
   # cannot happen during build.
   configureFlags = [

From 4b6ba5b27c7ce81140d188d976fe1a08c3e5d3ee Mon Sep 17 00:00:00 2001
From: talyz <kim.lindberger@gmail.com>
Date: Fri, 13 Sep 2019 08:40:59 +0200
Subject: [PATCH 032/152] nixos/gitlab: Fix swap of secrets

Fix accidental swap of the otp and db secrets in the secrets.yml
file. Fixes #68613.
---
 nixos/modules/services/misc/gitlab.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/nixos/modules/services/misc/gitlab.nix b/nixos/modules/services/misc/gitlab.nix
index caef4ad4ea80..bcf0603c6f39 100644
--- a/nixos/modules/services/misc/gitlab.nix
+++ b/nixos/modules/services/misc/gitlab.nix
@@ -806,8 +806,8 @@ in {
           export otp="$(<'${cfg.secrets.otpFile}')"
           export jws="$(<'${cfg.secrets.jwsFile}')"
           ${pkgs.jq}/bin/jq -n '{production: {secret_key_base: $ENV.secret,
-                                              otp_key_base: $ENV.db,
-                                              db_key_base: $ENV.otp,
+                                              otp_key_base: $ENV.otp,
+                                              db_key_base: $ENV.db,
                                               openid_connect_signing_key: $ENV.jws}}' \
                             > '${cfg.statePath}/config/secrets.yml'
         )

From d10b6bde34e9016c404e5efeb6f314ddec78aaf0 Mon Sep 17 00:00:00 2001
From: "(cdep)illabout" <cdep.illabout@gmail.com>
Date: Fri, 13 Sep 2019 16:02:35 +0900
Subject: [PATCH 033/152] codeowners: add cdepillabout to CODEOWNERS for
 Haskell-related packages

This commit adds myself as a CODEOWNER for the Haskell-related packages.
---
 .github/CODEOWNERS | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/.github/CODEOWNERS b/.github/CODEOWNERS
index 247af50dd39d..62971ba2c726 100644
--- a/.github/CODEOWNERS
+++ b/.github/CODEOWNERS
@@ -58,11 +58,11 @@
 /doc/languages-frameworks/python.section.md     @FRidh
 
 # Haskell
-/pkgs/development/compilers/ghc                       @basvandijk
-/pkgs/development/haskell-modules                     @basvandijk
-/pkgs/development/haskell-modules/default.nix         @basvandijk
-/pkgs/development/haskell-modules/generic-builder.nix @basvandijk
-/pkgs/development/haskell-modules/hoogle.nix          @basvandijk
+/pkgs/development/compilers/ghc                       @basvandijk @cdepillabout
+/pkgs/development/haskell-modules                     @basvandijk @cdepillabout
+/pkgs/development/haskell-modules/default.nix         @basvandijk @cdepillabout
+/pkgs/development/haskell-modules/generic-builder.nix @basvandijk @cdepillabout
+/pkgs/development/haskell-modules/hoogle.nix          @basvandijk @cdepillabout
 
 # Perl
 /pkgs/development/interpreters/perl @volth

From 4c981b4ffeec6e407e0eca035b57664565095584 Mon Sep 17 00:00:00 2001
From: Sascha Grunert <sgrunert@suse.com>
Date: Fri, 13 Sep 2019 09:04:21 +0200
Subject: [PATCH 034/152] buildah: 1.11.0 -> 1.11.1

Signed-off-by: Sascha Grunert <sgrunert@suse.com>
---
 pkgs/development/tools/buildah/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/tools/buildah/default.nix b/pkgs/development/tools/buildah/default.nix
index 9885dce04b20..9e7856c9e3a9 100644
--- a/pkgs/development/tools/buildah/default.nix
+++ b/pkgs/development/tools/buildah/default.nix
@@ -4,13 +4,13 @@
 
 buildGoPackage rec {
   pname = "buildah";
-  version = "1.11.0";
+  version = "1.11.1";
 
   src = fetchFromGitHub {
     owner  = "containers";
     repo   = "buildah";
     rev    = "v${version}";
-    sha256 = "114dmjqacz5hairl1s8qhndzr52lcvh99g565cq5ydscblnzpw1b";
+    sha256 = "0mbmb7994dcv8i41zgiqmb6qp5hawgygzam7mi4pmdygkx4ckkxw";
   };
 
   outputs = [ "bin" "man" "out" ];

From 154c9a863dd82431f8ee345c74976f26c81a0414 Mon Sep 17 00:00:00 2001
From: Henrik Jonsson <me@hkjn.me>
Date: Fri, 13 Sep 2019 10:09:44 +0200
Subject: [PATCH 035/152] tor-browser-bundle-bin: Drop github mirror

The github.com mirror for tor-browser hasn't been updated since
8.0.2, released in Oct 2018 (~11 months ago; currently latest
released version is 8.5.6):

https://github.com/TheTorProject/gettorbrowser/releases/
---
 .../browsers/tor-browser-bundle-bin/default.nix        | 10 ++--------
 1 file changed, 2 insertions(+), 8 deletions(-)

diff --git a/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix b/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix
index 739315917d43..563c0e751c84 100644
--- a/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix
+++ b/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix
@@ -95,18 +95,12 @@ let
 
   srcs = {
     x86_64-linux = fetchurl {
-      urls = [
-        "https://github.com/TheTorProject/gettorbrowser/releases/download/v${version}/tor-browser-linux64-${version}_${lang}.tar.xz"
-        "https://dist.torproject.org/torbrowser/${version}/tor-browser-linux64-${version}_${lang}.tar.xz"
-      ];
+      url = "https://dist.torproject.org/torbrowser/${version}/tor-browser-linux64-${version}_${lang}.tar.xz";
       sha256 = "00r5k9bbfpv3s6shxqypl13psr1zz51xiyz3vmm4flhr2qa4ycsz";
     };
 
     i686-linux = fetchurl {
-      urls = [
-        "https://dist.torproject.org/torbrowser/${version}/tor-browser-linux32-${version}_${lang}.tar.xz"
-        "https://github.com/TheTorProject/gettorbrowser/releases/download/v${version}/tor-browser-linux32-${version}_${lang}.tar.xz"
-      ];
+      url = "https://github.com/TheTorProject/gettorbrowser/releases/download/v${version}/tor-browser-linux32-${version}_${lang}.tar.xz";
       sha256 = "1nxvw5kiggfr4n5an436ass84cvwjviaa894kfm72yf2ls149f29";
     };
   };

From 6cfa3769a0974f675274047a6b25f0b70c540be6 Mon Sep 17 00:00:00 2001
From: Marek Mahut <marek.mahut@gmail.com>
Date: Fri, 13 Sep 2019 10:20:59 +0200
Subject: [PATCH 036/152] metabase: 0.32.10 -> 0.33.2

---
 pkgs/servers/metabase/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/metabase/default.nix b/pkgs/servers/metabase/default.nix
index 76bd69891c18..5babc638e26f 100644
--- a/pkgs/servers/metabase/default.nix
+++ b/pkgs/servers/metabase/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "metabase";
-  version = "0.32.10";
+  version = "0.33.2";
 
   src = fetchurl {
     url = "http://downloads.metabase.com/v${version}/metabase.jar";
-    sha256 = "0dzwwwvsi9pr40xbqws02yzjgx89ygjiybjd0n73hj69v6j9f2rn";
+    sha256 = "0sbh3xc4scp3qflnd0v7bd224w43rby20nzxb7xn2c80jwninnnl";
   };
 
   nativeBuildInputs = [ makeWrapper ];

From c7b50f715dbfcf07a243f2d46a3844f29adb3e57 Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Fri, 13 Sep 2019 16:43:46 +0800
Subject: [PATCH 037/152] icr: compile against openssl 1.0.2

---
 pkgs/top-level/all-packages.nix | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index ca37025f7f31..f2706444f379 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -7469,7 +7469,9 @@ in
     crystal
     crystal2nix;
 
-  icr = callPackage ../development/tools/icr {};
+  icr = callPackage ../development/tools/icr {
+    openssl = openssl_1_0_2;
+  };
 
   scry = callPackage ../development/tools/scry {};
 

From 280e73c7eb59e62debb98f6fbcb89623515b7fbd Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Fri, 13 Sep 2019 16:55:54 +0800
Subject: [PATCH 038/152] zoneminder: fix the build

---
 pkgs/servers/zoneminder/default.nix | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pkgs/servers/zoneminder/default.nix b/pkgs/servers/zoneminder/default.nix
index 6e6875c3550c..df6cad8c759b 100644
--- a/pkgs/servers/zoneminder/default.nix
+++ b/pkgs/servers/zoneminder/default.nix
@@ -174,6 +174,7 @@ in stdenv.mkDerivation rec {
       perlFlags="$perlFlags -I$i"
     done
 
+    mkdir -p $out/libexec
     for f in $out/bin/*.pl ; do
       mv $f $out/libexec/
       makeWrapper ${perlBin} $f \
@@ -186,7 +187,7 @@ in stdenv.mkDerivation rec {
 
   meta = with stdenv.lib; {
     description = "Video surveillance software system";
-    homepage = https://zoneminder.com;
+    homepage = "https://zoneminder.com";
     license = licenses.gpl3;
     maintainers = with maintainers; [ peterhoeg ];
     platforms = platforms.unix;

From f0c6cd779a3322a12c6318a16a15ebfb4d1d425b Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Fri, 13 Sep 2019 04:20:00 -0500
Subject: [PATCH 039/152] postgresqlPackages.tsearch_extras: add platforms

---
 pkgs/servers/sql/postgresql/ext/tsearch_extras.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/servers/sql/postgresql/ext/tsearch_extras.nix b/pkgs/servers/sql/postgresql/ext/tsearch_extras.nix
index 9bc556c700dc..77e4cd9df7ae 100644
--- a/pkgs/servers/sql/postgresql/ext/tsearch_extras.nix
+++ b/pkgs/servers/sql/postgresql/ext/tsearch_extras.nix
@@ -23,6 +23,7 @@ stdenv.mkDerivation {
     description = "Provides a few PostgreSQL functions for a lower-level data full text search";
     homepage = https://github.com/zulip/tsearch_extras/;
     license = licenses.postgresql;
+    platforms = postgresql.meta.platforms;
     maintainers = with maintainers; [ DerTim1 ];
   };
 }

From 7fc606065c003e954d85af0ec4cb0841606188bc Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Fri, 13 Sep 2019 04:20:00 -0500
Subject: [PATCH 040/152] postgresqlPackages.pgrouting: 2.6.2 -> 2.6.3

Changelog: https://github.com/pgRouting/pgrouting/releases/tag/v2.6.3
---
 pkgs/servers/sql/postgresql/ext/pgrouting.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/sql/postgresql/ext/pgrouting.nix b/pkgs/servers/sql/postgresql/ext/pgrouting.nix
index 6e1c6e3a4fca..48c41a9ca022 100644
--- a/pkgs/servers/sql/postgresql/ext/pgrouting.nix
+++ b/pkgs/servers/sql/postgresql/ext/pgrouting.nix
@@ -2,7 +2,7 @@
 
 stdenv.mkDerivation rec {
   pname = "pgrouting";
-  version = "2.6.2";
+  version = "2.6.3";
 
   nativeBuildInputs = [ cmake perl ];
   buildInputs = [ postgresql boost gmp cgal mpfr ];
@@ -11,7 +11,7 @@ stdenv.mkDerivation rec {
     owner  = "pgRouting";
     repo   = pname;
     rev    = "v${version}";
-    sha256 = "09xy5pmiwq0lxf2m8p4q5r892mfmn32vf8m75p84jnz4707z1l0j";
+    sha256 = "0jdjb8476vjgc7i26v2drcqjvhdbsk1wx243fddffg169nb664ml";
   };
 
   installPhase = ''

From 9a2e336c8a1520542b368d6651faa473d6888c64 Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Fri, 13 Sep 2019 04:20:00 -0500
Subject: [PATCH 041/152] tflint: 0.11.0 -> 0.11.1

Changelog: https://github.com/wata727/tflint/releases/tag/v0.11.1
---
 pkgs/development/tools/analysis/tflint/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/tools/analysis/tflint/default.nix b/pkgs/development/tools/analysis/tflint/default.nix
index 7dca029d557e..8c47a8bc0697 100644
--- a/pkgs/development/tools/analysis/tflint/default.nix
+++ b/pkgs/development/tools/analysis/tflint/default.nix
@@ -2,13 +2,13 @@
 
 buildGoModule rec {
   pname = "tflint";
-  version = "0.11.0";
+  version = "0.11.1";
 
   src = fetchFromGitHub {
     owner = "wata727";
     repo = pname;
     rev = "v${version}";
-    sha256 = "0aff7ckl245cyjs2rbgczkqlp2x6g4g458p4li0k1agk3m9bbq35";
+    sha256 = "0aw39xv6jpnhy201gp9jhz6cbz47k7qgxgcwsffak8janbk6bj2a";
   };
 
   modSha256 = "1facqppgpmmz2j7j77fa3mnjv2nzjxz4ya6xvyvyy92ma0ybclgh";

From 11ba54d66df60af51552ce290bea2aac3421f9e7 Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Fri, 13 Sep 2019 04:21:00 -0500
Subject: [PATCH 042/152] postgresqlPackages.repmgr: add platforms

---
 pkgs/servers/sql/postgresql/ext/repmgr.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/servers/sql/postgresql/ext/repmgr.nix b/pkgs/servers/sql/postgresql/ext/repmgr.nix
index 366d98d1b4b1..6dc3be727c65 100644
--- a/pkgs/servers/sql/postgresql/ext/repmgr.nix
+++ b/pkgs/servers/sql/postgresql/ext/repmgr.nix
@@ -25,6 +25,7 @@ stdenv.mkDerivation rec {
     homepage = "https://repmgr.org/";
     description = "Replication manager for PostgreSQL cluster";
     license = licenses.postgresql;
+    platforms = postgresql.meta.platforms;
     maintainers = with maintainers; [ zimbatm ];
   };
 }

From 8773f20845dbbad306c88c934feda05f0c9bd061 Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Fri, 13 Sep 2019 04:22:00 -0500
Subject: [PATCH 043/152] postgresqlPackages.pgrouting: add platforms

---
 pkgs/servers/sql/postgresql/ext/pgrouting.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/servers/sql/postgresql/ext/pgrouting.nix b/pkgs/servers/sql/postgresql/ext/pgrouting.nix
index 6e1c6e3a4fca..0b97c79c9384 100644
--- a/pkgs/servers/sql/postgresql/ext/pgrouting.nix
+++ b/pkgs/servers/sql/postgresql/ext/pgrouting.nix
@@ -24,7 +24,7 @@ stdenv.mkDerivation rec {
     description = "A PostgreSQL/PostGIS extension that provides geospatial routing functionality";
     homepage    = https://pgrouting.org/;
     maintainers = [ maintainers.steve-chavez ];
-    platforms   = platforms.linux;
+    platforms   = postgresql.meta.platforms;
     license     = licenses.gpl2;
   };
 }

From 1d3bfd35e2c5a4a02393952601c8f51cee8a68e7 Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Fri, 13 Sep 2019 04:23:00 -0500
Subject: [PATCH 044/152] postgresqlPackages.pgroonga: add platforms

---
 pkgs/servers/sql/postgresql/ext/pgroonga.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/servers/sql/postgresql/ext/pgroonga.nix b/pkgs/servers/sql/postgresql/ext/pgroonga.nix
index 7dc70ee976cf..15a220670008 100644
--- a/pkgs/servers/sql/postgresql/ext/pgroonga.nix
+++ b/pkgs/servers/sql/postgresql/ext/pgroonga.nix
@@ -29,6 +29,7 @@ stdenv.mkDerivation rec {
     '';
     homepage = "https://pgroonga.github.io/";
     license = licenses.postgresql;
+    platforms = postgresql.meta.platforms;
     maintainers = with maintainers; [ DerTim1 ];
   };
 }

From 29254b0bd7543d8a342c9b58526ed506a664202c Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Fri, 13 Sep 2019 04:24:00 -0500
Subject: [PATCH 045/152] postgresqlPackages.pgjwt: add platforms

---
 pkgs/servers/sql/postgresql/ext/pgjwt.nix | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pkgs/servers/sql/postgresql/ext/pgjwt.nix b/pkgs/servers/sql/postgresql/ext/pgjwt.nix
index 7dcaac07d877..9576c4186118 100644
--- a/pkgs/servers/sql/postgresql/ext/pgjwt.nix
+++ b/pkgs/servers/sql/postgresql/ext/pgjwt.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub }:
+{ stdenv, fetchFromGitHub, postgresql }:
 
 stdenv.mkDerivation {
   pname = "pgjwt";
@@ -23,6 +23,7 @@ stdenv.mkDerivation {
       sign() and verify() functions to create and verify JSON Web Tokens.
     '';
     license = licenses.mit;
+    platforms = postgresql.meta.platforms;
     maintainers = with maintainers; [spinus];
   };
 }

From 5548ff632e45f313d8b83c602ef13171cf5770ef Mon Sep 17 00:00:00 2001
From: Daniel Schaefer <git@danielschaefer.me>
Date: Fri, 13 Sep 2019 11:35:50 +0200
Subject: [PATCH 046/152] microsoft_gsl: Fix gcc8 build

---
 pkgs/development/libraries/microsoft_gsl/default.nix | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/pkgs/development/libraries/microsoft_gsl/default.nix b/pkgs/development/libraries/microsoft_gsl/default.nix
index 0919ee6cd289..dffe6fa30590 100644
--- a/pkgs/development/libraries/microsoft_gsl/default.nix
+++ b/pkgs/development/libraries/microsoft_gsl/default.nix
@@ -20,6 +20,9 @@ stdenv.mkDerivation rec {
   nativeBuildInputs = [ catch cmake ];
   buildPhase = if nativeBuild then "make" else "true";
 
+  # https://github.com/microsoft/GSL/issues/806
+  cmakeFlags = [ "-DCMAKE_CXX_FLAGS=-Wno-catch-value" ];
+
   installPhase = ''
     mkdir -p $out/include
     mv ../include/ $out/

From 19250f288e11ff2c4fceed9b27905bd06c3f764f Mon Sep 17 00:00:00 2001
From: Henrik Jonsson <me@hkjn.me>
Date: Fri, 13 Sep 2019 11:42:22 +0200
Subject: [PATCH 047/152] wasabiwallet: 1.1.6 -> 1.1.8

---
 pkgs/applications/blockchains/wasabiwallet/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/blockchains/wasabiwallet/default.nix b/pkgs/applications/blockchains/wasabiwallet/default.nix
index 933e5773edad..41510eebff60 100644
--- a/pkgs/applications/blockchains/wasabiwallet/default.nix
+++ b/pkgs/applications/blockchains/wasabiwallet/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "wasabiwallet";
-  version = "1.1.6";
+  version = "1.1.8";
 
   src = fetchurl {
     url = "https://github.com/zkSNACKs/WalletWasabi/releases/download/v${version}/WasabiLinux-${version}.tar.gz";
-    sha256 = "1i7fhaj9chjlm7qg0h3azy4djnm9rxskbr3dzjj0n9rw8cjdqyq6";
+    sha256 = "10w4f9d0li25ifkmlmj6302i70sw3drdwd54d4r7x1n5kc6p164j";
   };
 
   dontBuild = true;

From afceaee16351b5e8f2ba27fcb6ebc0a799e545e5 Mon Sep 17 00:00:00 2001
From: Linus Heckemann <git@sphalerite.org>
Date: Fri, 13 Sep 2019 11:51:20 +0200
Subject: [PATCH 048/152] itk4: init at 4.13.1

This is exactly the same as we had prior to
e7b0c389c25d82229434812de5f502c64409dd63, which broke some dependents,
just under a new attribute name.
---
 pkgs/development/libraries/itk/4.x.nix | 34 ++++++++++++++++++++++++++
 pkgs/top-level/all-packages.nix        |  2 ++
 2 files changed, 36 insertions(+)
 create mode 100644 pkgs/development/libraries/itk/4.x.nix

diff --git a/pkgs/development/libraries/itk/4.x.nix b/pkgs/development/libraries/itk/4.x.nix
new file mode 100644
index 000000000000..df016d9fcac0
--- /dev/null
+++ b/pkgs/development/libraries/itk/4.x.nix
@@ -0,0 +1,34 @@
+{ stdenv, fetchurl, cmake, libX11, libuuid, xz, vtk }:
+
+stdenv.mkDerivation rec {
+  name = "itk-4.13.1";
+
+  src = fetchurl {
+    url = mirror://sourceforge/itk/InsightToolkit-4.13.1.tar.xz;
+    sha256 = "0p4cspgbnjsnkjz8nfg092yaxz8qkqi2nkxjdv421d0zrmi0i2al";
+  };
+
+  cmakeFlags = [
+    "-DBUILD_TESTING=OFF"
+    "-DBUILD_EXAMPLES=OFF"
+    "-DBUILD_SHARED_LIBS=ON"
+    "-DModule_ITKMINC=ON"
+    "-DModule_ITKIOMINC=ON"
+    "-DModule_ITKIOTransformMINC=ON"
+    "-DModule_ITKVtkGlue=ON"
+    "-DModule_ITKReview=ON"
+  ];
+
+  enableParallelBuilding = true;
+
+  nativeBuildInputs = [ cmake xz ];
+  buildInputs = [ libX11 libuuid vtk ];
+
+  meta = {
+    description = "Insight Segmentation and Registration Toolkit";
+    homepage = http://www.itk.org/;
+    license = stdenv.lib.licenses.asl20;
+    maintainers = with stdenv.lib.maintainers; [viric];
+    platforms = with stdenv.lib.platforms; linux ++ darwin;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 44274ce08a42..bf55d6064c5e 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -11410,6 +11410,8 @@ in
 
   isso = callPackage ../servers/isso { };
 
+  itk4 = callPackage ../development/libraries/itk/4.x.nix { };
+
   itk = callPackage ../development/libraries/itk { };
 
   jasper = callPackage ../development/libraries/jasper { };

From f6182da2c6fb089cc8723e3f0a1c88be65112db9 Mon Sep 17 00:00:00 2001
From: Linus Heckemann <git@sphalerite.org>
Date: Fri, 13 Sep 2019 11:52:54 +0200
Subject: [PATCH 049/152] ants: use itk 4.x

---
 pkgs/applications/science/biology/ants/default.nix | 11 +++++------
 1 file changed, 5 insertions(+), 6 deletions(-)

diff --git a/pkgs/applications/science/biology/ants/default.nix b/pkgs/applications/science/biology/ants/default.nix
index 834d2497e8df..6e1a2a3407ee 100644
--- a/pkgs/applications/science/biology/ants/default.nix
+++ b/pkgs/applications/science/biology/ants/default.nix
@@ -1,9 +1,8 @@
-{ stdenv, fetchFromGitHub, fetchpatch, cmake, makeWrapper, itk, vtk }:
+{ stdenv, fetchFromGitHub, fetchpatch, cmake, makeWrapper, itk4, vtk }:
 
 stdenv.mkDerivation rec {
-  _name    = "ANTs";
-  _version = "2.2.0";
-  name  = "${_name}-${_version}";
+  pname    = "ANTs";
+  version = "2.2.0";
 
   src = fetchFromGitHub {
     owner  = "ANTsX";
@@ -21,7 +20,7 @@ stdenv.mkDerivation rec {
   ];
 
   nativeBuildInputs = [ cmake makeWrapper ];
-  buildInputs = [ itk vtk ];
+  buildInputs = [ itk4 vtk ];
 
   cmakeFlags = [ "-DANTS_SUPERBUILD=FALSE" "-DUSE_VTK=TRUE" ];
 
@@ -34,7 +33,7 @@ stdenv.mkDerivation rec {
   '';
 
   meta = with stdenv.lib; {
-    homepage = https://github.com/ANTxS/ANTs;
+    homepage = https://github.com/ANTsX/ANTs;
     description = "Advanced normalization toolkit for medical image registration and other processing";
     maintainers = with maintainers; [ bcdarwin ];
     platforms = platforms.unix;

From cef857e8b7ed69fefa99019e79f63ef5d744bacc Mon Sep 17 00:00:00 2001
From: zimbatm <zimbatm@zimbatm.com>
Date: Fri, 13 Sep 2019 11:05:41 +0200
Subject: [PATCH 050/152] bundlerApp: avoid unecessary rebuilds when gemdir
 changes

Because the gemdir was referenced on the derivation, it would cause the
whole gemdir to get added to the store, which would in turn force the
derivation to be rebuilt whenever unrelated folder files would change.
---
 pkgs/development/ruby-modules/bundler-app/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/ruby-modules/bundler-app/default.nix b/pkgs/development/ruby-modules/bundler-app/default.nix
index f0727b3c1704..2fa706643234 100644
--- a/pkgs/development/ruby-modules/bundler-app/default.nix
+++ b/pkgs/development/ruby-modules/bundler-app/default.nix
@@ -36,7 +36,7 @@
 let
   basicEnv = (callPackage ../bundled-common {}) args;
 
-  cmdArgs = removeAttrs args [ "pname" "postBuild" "gemConfig" "passthru" "gemset" ] // {
+  cmdArgs = removeAttrs args [ "pname" "postBuild" "gemConfig" "passthru" "gemset" "gemdir" ] // {
     inherit preferLocalBuild allowSubstitutes; # pass the defaults
 
     buildInputs = buildInputs ++ lib.optional (scripts != []) makeWrapper;

From a26445a2ddfb5e4354ab6b352b70effdf28c686e Mon Sep 17 00:00:00 2001
From: Philipp <philipp@xndr.de>
Date: Thu, 12 Sep 2019 16:43:09 +0200
Subject: [PATCH 051/152] mudlet: 4.0.3 -> 4.1.2

---
 pkgs/games/mudlet/default.nix | 14 ++++----------
 1 file changed, 4 insertions(+), 10 deletions(-)

diff --git a/pkgs/games/mudlet/default.nix b/pkgs/games/mudlet/default.nix
index dc29c3d5f744..d2646bf8d67e 100644
--- a/pkgs/games/mudlet/default.nix
+++ b/pkgs/games/mudlet/default.nix
@@ -6,24 +6,16 @@ let
 in
 stdenv.mkDerivation rec {
   pname = "mudlet";
-  version = "4.0.3";
+  version = "4.1.2";
 
   src = fetchFromGitHub {
     owner = "Mudlet";
     repo = "Mudlet";
     rev = "Mudlet-${version}";
     fetchSubmodules = true;
-    sha256 = "18bl4k0qgh47d9k5ipfvypfj1il678c0ws64a8adn8k21jajzkik";
+    sha256 = "1d6r51cj8a71hmhzsayd2far4hliwz5pnrsaj3dn39m7c0iikgdn";
   };
 
-  patches = [
-    ( fetchpatch {
-      url = "https://github.com/Mudlet/Mudlet/commit/3c8f12b6d757894d92ec2e2c9b12b91f69e8a3b6.patch";
-      name = "hunspell-1.7";
-      sha256 = "09qggls4pzpd8h9h10fbpfd7x3kr7fjp9axdwz98igpwy714n98j";
-    })
-  ];
-
   nativeBuildInputs = [ cmake wrapQtAppsHook qttools which ];
   buildInputs = [
     pcre pugixml qtbase qtmultimedia luaEnv libzip libGLU yajl boost hunspell
@@ -35,6 +27,8 @@ stdenv.mkDerivation rec {
   enableParallelBuilding = true;
 
   installPhase =  ''
+    mkdir -pv $out/lib
+    cp 3rdparty/edbee-lib/edbee-lib/qslog/lib/libQsLog.so $out/lib
     mkdir -pv $out/bin
     cp src/mudlet $out
     mkdir -pv $out/share/mudlet

From 7350dd9d944c91e34c20997e592671711254e618 Mon Sep 17 00:00:00 2001
From: WilliButz <wbutz@cyberfnord.de>
Date: Fri, 13 Sep 2019 13:38:24 +0200
Subject: [PATCH 052/152] rspamd: disable LuaJIT support on aarch64

When compiled with LuaJIT support, rspamd segfaults on aarch64.
Without LuaJIT, rspamd falls back to plain Lua and torch support needs to
be disabled.
---
 pkgs/servers/mail/rspamd/default.nix | 13 ++++++++-----
 1 file changed, 8 insertions(+), 5 deletions(-)

diff --git a/pkgs/servers/mail/rspamd/default.nix b/pkgs/servers/mail/rspamd/default.nix
index 2b3986c412d0..0823ed2fe4b8 100644
--- a/pkgs/servers/mail/rspamd/default.nix
+++ b/pkgs/servers/mail/rspamd/default.nix
@@ -1,10 +1,11 @@
 { stdenv, lib, fetchFromGitHub, cmake, perl
 , file, glib, libevent, luajit, openssl, pcre, pkgconfig, sqlite, ragel, icu
-, hyperscan, libfann, gd, jemalloc, openblas
+, hyperscan, libfann, gd, jemalloc, openblas, lua
 , withFann ? true
 , withGd ? false
 , withBlas ? true
 , withHyperscan ? stdenv.isx86_64
+, withLuaJIT ? stdenv.isx86_64
 }:
 
 assert withHyperscan -> stdenv.isx86_64;
@@ -24,11 +25,12 @@ stdenv.mkDerivation rec {
   };
 
   nativeBuildInputs = [ cmake pkgconfig perl ];
-  buildInputs = [ glib libevent libmagic luajit openssl pcre sqlite ragel icu jemalloc ]
+  buildInputs = [ glib libevent libmagic openssl pcre sqlite ragel icu jemalloc ]
     ++ lib.optional withFann libfann
     ++ lib.optional withGd gd
     ++ lib.optional withHyperscan hyperscan
-    ++ lib.optional withBlas openblas;
+    ++ lib.optional withBlas openblas
+    ++ lib.optional withLuaJIT luajit ++ lib.optional (!withLuaJIT) lua;
 
   cmakeFlags = [
     "-DDEBIAN_BUILD=ON"
@@ -39,10 +41,11 @@ stdenv.mkDerivation rec {
     "-DENABLE_JEMALLOC=ON"
   ] ++ lib.optional withFann "-DENABLE_FANN=ON"
     ++ lib.optional withHyperscan "-DENABLE_HYPERSCAN=ON"
-    ++ lib.optional withGd "-DENABLE_GD=ON";
+    ++ lib.optional withGd "-DENABLE_GD=ON"
+    ++ lib.optional (!withLuaJIT) "-DENABLE_TORCH=OFF";
 
   meta = with stdenv.lib; {
-    homepage = https://rspamd.com;
+    homepage = "https://rspamd.com";
     license = licenses.asl20;
     description = "Advanced spam filtering system";
     maintainers = with maintainers; [ avnik fpletz globin ];

From eb5497c4199464edb6a5ea12dd5ff996af1cc021 Mon Sep 17 00:00:00 2001
From: Daniel Schaefer <git@danielschaefer.me>
Date: Fri, 13 Sep 2019 13:30:02 +0200
Subject: [PATCH 053/152] xflux-gui: 1.1.10 -> 1.2.0

Didn't build with the old version because they dropped Python2 and
changed some dependencies.
---
 pkgs/tools/misc/xflux/gui.nix   | 35 ++++++++++++++++++---------------
 pkgs/top-level/all-packages.nix |  4 +---
 2 files changed, 20 insertions(+), 19 deletions(-)

diff --git a/pkgs/tools/misc/xflux/gui.nix b/pkgs/tools/misc/xflux/gui.nix
index f3f80143c57a..6a629af61ba2 100644
--- a/pkgs/tools/misc/xflux/gui.nix
+++ b/pkgs/tools/misc/xflux/gui.nix
@@ -1,39 +1,42 @@
-{ stdenv, fetchFromGitHub, pythonPackages
-, gnome_python
-, libappindicator-gtk2, xflux, librsvg, wrapGAppsHook
+{ stdenv, fetchFromGitHub, buildPythonApplication, python3Packages, wrapGAppsHook
+, xflux, librsvg, gtk3, gobject-introspection, pango, gdk-pixbuf, atk
+, pexpect, pyGtkGlade, pygobject3, pyxdg, libappindicator-gtk3
 }:
-pythonPackages.buildPythonApplication rec {
+buildPythonApplication rec {
   pname = "xflux-gui";
-  version = "1.1.10";
+  version = "1.2.0";
 
   src = fetchFromGitHub {
     repo = "xflux-gui";
     owner = "xflux-gui";
     rev = "v${version}";
-    sha256 = "1k67qg9y4c0n9ih0syx81ixbdl2x89gd4arwh71316cshskn0rc8";
+    sha256 = "09zphcd9821ink63636swql4g85hg6lpsazqg1mawlk9ikc8zbps";
   };
 
-  propagatedBuildInputs = with pythonPackages; [
-    pexpect
-    pyGtkGlade
-    pygobject2
+  propagatedBuildInputs = [
     pyxdg
-    libappindicator-gtk2
-    gnome_python
+    pexpect
+    pygobject3
   ];
 
-  buildInputs = [ xflux librsvg ];
+  buildInputs = [
+    xflux gtk3
+  ];
 
-  nativeBuildInputs = [ wrapGAppsHook ];
+  nativeBuildInputs = [
+    wrapGAppsHook gobject-introspection
+    pango gdk-pixbuf atk libappindicator-gtk3
+  ];
 
   postPatch = ''
-     substituteInPlace src/fluxgui/xfluxcontroller.py --replace "pexpect.spawn(\"xflux\"" "pexpect.spawn(\"${xflux}/bin/xflux\""
+     substituteInPlace src/fluxgui/xfluxcontroller.py \
+       --replace "pexpect.spawn(\"xflux\"" "pexpect.spawn(\"${xflux}/bin/xflux\""
   '';
 
   postFixup = ''
     wrapGAppsHook
     wrapPythonPrograms
-    patchPythonScript $out/${pythonPackages.python.sitePackages}/fluxgui/fluxapp.py
+    patchPythonScript $out/${python3Packages.python.sitePackages}/fluxgui/fluxapp.py
   '';
 
   meta = {
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 44274ce08a42..c04a90849dc7 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -7098,9 +7098,7 @@ in
   xe-guest-utilities = callPackage ../tools/virtualization/xe-guest-utilities { };
 
   xflux = callPackage ../tools/misc/xflux { };
-  xflux-gui = callPackage ../tools/misc/xflux/gui.nix {
-    gnome_python = gnome2.gnome_python;
-  };
+  xflux-gui = python3Packages.callPackage ../tools/misc/xflux/gui.nix { };
 
   xfsprogs = callPackage ../tools/filesystems/xfsprogs { };
   libxfs = xfsprogs.dev;

From 9dc74f3c44fe6d22430e392629aa0e9473ceede0 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Fri, 13 Sep 2019 09:39:56 -0300
Subject: [PATCH 054/152] mojave-gtk-theme: 2019-05-21 -> 2019-09-09

---
 pkgs/data/themes/mojave/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/data/themes/mojave/default.nix b/pkgs/data/themes/mojave/default.nix
index 1fc82e8aca2b..714e026d32c1 100644
--- a/pkgs/data/themes/mojave/default.nix
+++ b/pkgs/data/themes/mojave/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "mojave-gtk-theme";
-  version = "2019-05-21";
+  version = "2019-09-09";
 
   src = fetchFromGitHub {
     owner = "vinceliuice";
     repo = pname;
-    rev = "f6167740b308715b38567ec660aa5241d964af1b";
-    sha256 = "1k57f5vimdrciskjgxqz7k0xybc7b8pwcsii0p6kc8klmyrjrr9c";
+    rev = version;
+    sha256 = "1qffh6jsvy61f29ymw1v9hpjnsvhqin19mp05cys1lnwc7y810zr";
   };
 
   buildInputs = [ gtk_engines ];

From 08d556c0e8590a2aabd321c3b7b4f40ae6ea1f92 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Fri, 13 Sep 2019 13:49:55 +0100
Subject: [PATCH 055/152] python.pkgs.pylint_1_9: 1.9.4 -> 1.9.5

Also fix build by skipping a test that requires setuptools to be present.
(Also just adding setuptools does not fix the issue either?)
---
 pkgs/development/python-modules/pylint/1.9.nix | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/pylint/1.9.nix b/pkgs/development/python-modules/pylint/1.9.nix
index c088ea6a3967..96f50568f787 100644
--- a/pkgs/development/python-modules/pylint/1.9.nix
+++ b/pkgs/development/python-modules/pylint/1.9.nix
@@ -4,7 +4,7 @@
 
 buildPythonPackage rec {
   pname = "pylint";
-  version = "1.9.4";
+  version = "1.9.5";
 
   src = fetchPypi {
     inherit pname version;
@@ -24,6 +24,8 @@ buildPythonPackage rec {
     pytest pylint/test -k "not ${lib.concatStringsSep " and not " (
       [ # Broken test
         "test_good_comprehension_checks"
+        # requires setuptools
+        "test_pkginfo"
         # See PyCQA/pylint#2535
         "test_libmodule" ] ++
       # Disable broken darwin tests

From acf571eec4e70447bb7b8abcd1856c16b1af5772 Mon Sep 17 00:00:00 2001
From: Daniel Schaefer <git@danielschaefer.me>
Date: Fri, 13 Sep 2019 15:00:54 +0200
Subject: [PATCH 056/152] httplz: Fix build with openssl_1_0_2

The rust crate dependency that wraps OpenSSL doesn't support the Openssl
1.1.
---
 pkgs/tools/networking/httplz/default.nix | 4 ++--
 pkgs/top-level/all-packages.nix          | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/tools/networking/httplz/default.nix b/pkgs/tools/networking/httplz/default.nix
index b7ee85da9d8d..001041a0799e 100644
--- a/pkgs/tools/networking/httplz/default.nix
+++ b/pkgs/tools/networking/httplz/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, rustPlatform, pkgs, darwin }:
+{ stdenv, lib, fetchFromGitHub, rustPlatform, openssl, pkgconfig, darwin, libiconv }:
 
 rustPlatform.buildRustPackage rec {
   pname = "httplz";
@@ -11,7 +11,7 @@ rustPlatform.buildRustPackage rec {
     sha256 = "0q9ng8vf01k65zmcm7bbkqyrkj5hs86zdxwrfj98f4xqxrm75rf6";
   };
 
-  buildInputs = with pkgs; [ openssl pkgconfig ] ++ lib.optionals stdenv.isDarwin [ libiconv darwin.apple_sdk.frameworks.Security ];
+  buildInputs = [ openssl pkgconfig ] ++ lib.optionals stdenv.isDarwin [ libiconv darwin.apple_sdk.frameworks.Security ];
 
   cargoBuildFlags = [ "--bin httplz" ];
   cargoPatches = [ ./cargo-lock.patch ];
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index a315698ccd95..4f5726f9b30d 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -3855,7 +3855,7 @@ in
 
   httping = callPackage ../tools/networking/httping {};
 
-  httplz = callPackage ../tools/networking/httplz { };
+  httplz = callPackage ../tools/networking/httplz { openssl = openssl_1_0_2; };
 
   httpfs2 = callPackage ../tools/filesystems/httpfs { };
 

From dc0e697038b2a26adf5a551c1d479ab39f470db5 Mon Sep 17 00:00:00 2001
From: Daniel Schaefer <git@danielschaefer.me>
Date: Fri, 13 Sep 2019 15:12:18 +0200
Subject: [PATCH 057/152] xen: Ignore GCC8 errors

---
 pkgs/applications/virtualization/xen/4.8.nix | 11 +++++++++--
 1 file changed, 9 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/virtualization/xen/4.8.nix b/pkgs/applications/virtualization/xen/4.8.nix
index 1608fabf4b29..c7568d990626 100644
--- a/pkgs/applications/virtualization/xen/4.8.nix
+++ b/pkgs/applications/virtualization/xen/4.8.nix
@@ -167,8 +167,15 @@ callPackage (import ./generic.nix (rec {
     xenpmdpatch
   ];
 
-  # Fix build on Glibc 2.24.
-  NIX_CFLAGS_COMPILE = "-Wno-error=deprecated-declarations";
+  NIX_CFLAGS_COMPILE = [
+    # Fix build on Glibc 2.24
+    "-Wno-error=deprecated-declarations"
+    # Fix build with GCC8
+    "-Wno-error=maybe-uninitialized"
+    "-Wno-error=stringop-truncation"
+    "-Wno-error=format-truncation"
+    "-Wno-error=array-bounds"
+  ];
 
   postPatch = ''
     # Avoid a glibc >= 2.25 deprecation warnings that get fatal via -Werror.

From 32d0ee40f5c546d77e90b6eba5b304ab6ef6c319 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Fri, 13 Sep 2019 10:19:51 -0300
Subject: [PATCH 058/152] arc-theme: 20190330 -> 20190910

- Update version number
- Update repository owner
- Update home page
- Remove build time dependency on gnome3.gnome-shell: only gnome-shell
  version is needed
- Linking gnome-shell support for 3.30 to 3.32 is not needed anymore
- patchShebangs is not needed
---
 pkgs/misc/themes/arc/default.nix | 22 +++++++++-------------
 1 file changed, 9 insertions(+), 13 deletions(-)

diff --git a/pkgs/misc/themes/arc/default.nix b/pkgs/misc/themes/arc/default.nix
index da12255e91ee..dc54c1499fb9 100644
--- a/pkgs/misc/themes/arc/default.nix
+++ b/pkgs/misc/themes/arc/default.nix
@@ -3,13 +3,13 @@
 
 stdenv.mkDerivation rec {
   pname = "arc-theme";
-  version = "20190330";
+  version = "20190910";
 
   src = fetchFromGitHub {
-    owner  = "NicoHood";
+    owner  = "arc-design";
     repo   = pname;
     rev    = version;
-    sha256 = "16n5svgkpa8azxgyy64zwjjc04r57wfzkdq9igqvbvwkbvx8aa89";
+    sha256 = "161kx9ii5ij1503nvhgn3pyqfj7cj03l1di2yf8kwwfczbi4mq3j";
   };
 
   nativeBuildInputs = [
@@ -19,7 +19,6 @@ stdenv.mkDerivation rec {
     optipng
     inkscape
     gtk3
-    gnome3.gnome-shell
   ];
 
   propagatedUserEnvPkgs = [
@@ -29,26 +28,23 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
-  postPatch = ''
-    patchShebangs .
-    # TODO: remove this after update
-    ln -s 3.30 common/gnome-shell/3.32
-  '';
-
   preBuild = ''
     # Shut up inkscape's warnings about creating profile directory
     export HOME="$NIX_BUILD_ROOT"
   '';
 
-  configureFlags = [ "--disable-unity" ];
+  configureFlags = [
+    "--with-gnome-shell=${stdenv.lib.versions.majorMinor gnome3.gnome-shell.version}"
+    "--disable-unity"
+  ];
 
   postInstall = ''
     install -Dm644 -t $out/share/doc/${pname} AUTHORS *.md
   '';
 
   meta = with stdenv.lib; {
-    description = "A flat theme with transparent elements for GTK 3, GTK 2 and Gnome-Shell";
-    homepage    = https://github.com/NicoHood/arc-theme;
+    description = "Flat theme with transparent elements for GTK 3, GTK 2 and Gnome Shell";
+    homepage    = https://github.com/arc-design/arc-theme;
     license     = licenses.gpl3;
     maintainers = with maintainers; [ simonvandel romildo ];
     platforms   = platforms.linux;

From f93d1762ee27a29f2aa6412fe45f0886ba3e7554 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Fri, 13 Sep 2019 10:27:41 -0300
Subject: [PATCH 059/152] arc-theme: move to pkgs/data/themes

---
 pkgs/{misc => data}/themes/arc/default.nix | 0
 pkgs/top-level/all-packages.nix            | 4 ++--
 2 files changed, 2 insertions(+), 2 deletions(-)
 rename pkgs/{misc => data}/themes/arc/default.nix (100%)

diff --git a/pkgs/misc/themes/arc/default.nix b/pkgs/data/themes/arc/default.nix
similarity index 100%
rename from pkgs/misc/themes/arc/default.nix
rename to pkgs/data/themes/arc/default.nix
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 406b42f498de..08c26bef360d 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -966,8 +966,6 @@ in
     novacomd = callPackage ../development/mobile/webos/novacomd.nix { };
   };
 
-  arc-theme = callPackage ../misc/themes/arc { };
-
   arc-kde-theme = callPackage ../misc/themes/arc-kde { };
 
   adapta-gtk-theme = callPackage ../misc/themes/adapta { };
@@ -16549,6 +16547,8 @@ in
 
   arc-icon-theme = callPackage ../data/icons/arc-icon-theme { };
 
+  arc-theme = callPackage ../data/themes/arc { };
+
   arkpandora_ttf = callPackage ../data/fonts/arkpandora { };
 
   aurulent-sans = callPackage ../data/fonts/aurulent-sans { };

From 535117b136a6dd22f4c0326e383fd0bc0b145b25 Mon Sep 17 00:00:00 2001
From: danme <daniel@menke-online.com>
Date: Fri, 13 Sep 2019 15:29:32 +0200
Subject: [PATCH 060/152] csvkit: fix failing test

downgrading dependency agate-sql
---
 pkgs/tools/text/csvkit/default.nix | 13 ++++++++++++-
 1 file changed, 12 insertions(+), 1 deletion(-)

diff --git a/pkgs/tools/text/csvkit/default.nix b/pkgs/tools/text/csvkit/default.nix
index f581e44bcc8a..d2c710d10f8c 100644
--- a/pkgs/tools/text/csvkit/default.nix
+++ b/pkgs/tools/text/csvkit/default.nix
@@ -10,7 +10,18 @@ python3.pkgs.buildPythonApplication rec {
   };
 
   propagatedBuildInputs = with python3.pkgs; [
-    agate agate-excel agate-dbf agate-sql six
+    agate
+    agate-excel
+    agate-dbf
+    # sql test fail with agate-sql-0.5.4
+    (agate-sql.overridePythonAttrs(old: rec {
+      version = "0.5.3";
+      src = python3.pkgs.fetchPypi {
+        inherit (old) pname;
+        inherit version;
+        sha256 = "1d6rbahmdix7xi7ma2v86fpk5yi32q5dba5vama35w5mmn2pnyw7";
+      };}))
+    six
   ];
 
   checkInputs = with python3.pkgs; [

From 9b7e7e726e246f845283ec8c56fb1d2c203e6498 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Christian=20K=C3=B6gler?= <ck3d@gmx.de>
Date: Sat, 27 Jul 2019 10:24:21 +0200
Subject: [PATCH 061/152] redo-apenwarr: update to release 0.42 and added docs
 and checks

---
 .../redo-apenwarr/beautifulsoup.nix           | 20 +++++
 .../build-managers/redo-apenwarr/default.nix  | 86 +++++++++++++++----
 .../redo-apenwarr/mkdocs-exclude.nix          | 20 +++++
 3 files changed, 108 insertions(+), 18 deletions(-)
 create mode 100644 pkgs/development/tools/build-managers/redo-apenwarr/beautifulsoup.nix
 create mode 100644 pkgs/development/tools/build-managers/redo-apenwarr/mkdocs-exclude.nix

diff --git a/pkgs/development/tools/build-managers/redo-apenwarr/beautifulsoup.nix b/pkgs/development/tools/build-managers/redo-apenwarr/beautifulsoup.nix
new file mode 100644
index 000000000000..571df924e1f8
--- /dev/null
+++ b/pkgs/development/tools/build-managers/redo-apenwarr/beautifulsoup.nix
@@ -0,0 +1,20 @@
+{ pythonPackages, isPy3k, pkgs }:
+
+pythonPackages.buildPythonPackage rec {
+  name = "beautifulsoup-3.2.1";
+  disabled = isPy3k;
+
+  src = pkgs.fetchurl {
+    url = "http://www.crummy.com/software/BeautifulSoup/download/3.x/BeautifulSoup-3.2.1.tar.gz";
+    sha256 = "1nshbcpdn0jpcj51x0spzjp519pkmqz0n0748j7dgpz70zlqbfpm";
+  };
+
+  # error: invalid command 'test'
+  doCheck = false;
+
+  meta = {
+    homepage = http://www.crummy.com/software/BeautifulSoup/;
+    license = "bsd";
+    description = "Undemanding HTML/XML parser";
+  };
+}
diff --git a/pkgs/development/tools/build-managers/redo-apenwarr/default.nix b/pkgs/development/tools/build-managers/redo-apenwarr/default.nix
index 7d08bbf6df2c..83f87ac96614 100644
--- a/pkgs/development/tools/build-managers/redo-apenwarr/default.nix
+++ b/pkgs/development/tools/build-managers/redo-apenwarr/default.nix
@@ -1,30 +1,80 @@
-{stdenv, fetchFromGitHub, python2, which}:
-stdenv.mkDerivation {
-  pname = "redo-apenwarr";
+{ stdenv, lib, python27, fetchFromGitHub, mkdocs, which, findutils, coreutils
+, perl
+, doCheck ? true
+}: let
 
-  version = "unstable-2019-06-21";
+  # copy from 
+  # pkgs/applications/networking/pyload/beautifulsoup.nix
+  beautifulsoup = python27.pkgs.callPackage ./beautifulsoup.nix {
+    pythonPackages = python27.pkgs;
+  };
+
+  mkdocs-exclude = python27.pkgs.callPackage ./mkdocs-exclude.nix {
+    pythonPackages = python27.pkgs;
+  };
+in stdenv.mkDerivation rec {
+
+  pname = "redo-apenwarr";
+  version = "0.42";
 
   src = fetchFromGitHub {
     owner = "apenwarr";
-    repo = "redo";
-    rev = "8924fa35fa7363b531f8e6b48a1328d2407ad5cf";
-    sha256 = "1dj20w29najqjyvk0jh5kqbcd10k32rad986q5mzv4v49qcwdc1q";
+    repo = pname;
+    rev = "${pname}-${version}";
+    sha256 = "1060yb7hrxm8c7bfvb0y4j0acpxsj6hbykw1d9549zpkxxr9nsgm";
   };
 
-  DESTDIR="";
-  PREFIX = placeholder "out";
+  postPatch = ''
+
+    patchShebangs minimal/do
+
+  '' + lib.optionalString doCheck ''
+    unset CC CXX
+
+    substituteInPlace minimal/do.test \
+      --replace "/bin/pwd" "${coreutils}/bin/pwd"
+
+    substituteInPlace t/105-sympath/all.do \
+      --replace "/bin/pwd" "${coreutils}/bin/pwd"
+
+    substituteInPlace t/all.do \
+      --replace "/bin/ls" "ls"
+
+    substituteInPlace t/110-compile/hello.o.do \
+      --replace "/usr/include" "${stdenv.cc.libc.dev}/include"
+
+    substituteInPlace t/200-shell/nonshelltest.do \
+      --replace "/usr/bin/env perl" "${perl}/bin/perl"
 
-  patchPhase = ''
-    patchShebangs .
   '';
 
-  buildInputs = [ python2 which ];
+  inherit doCheck;
 
-  meta = with stdenv.lib; {
-    description = "Apenwarr version of the redo build tool.";
-    homepage = https://github.com/apenwarr/redo/;
-    license = stdenv.lib.licenses.asl20;
-    platforms = platforms.all;
-    maintainers = with stdenv.lib.maintainers; [ andrewchambers ];
+  checkTarget = "test";
+
+  outputs = [ "out" "man" ];
+
+  installFlags = [
+    "PREFIX=$(out)"
+    "DESTDIR=/"
+  ];
+
+  nativeBuildInputs = [
+    python27
+    beautifulsoup
+    mkdocs
+    mkdocs-exclude
+    which
+    findutils
+  ];
+
+  meta = with lib; {
+    description = "Smaller, easier, more powerful, and more reliable than make. An implementation of djb's redo.";
+    homepage = https://github.com/apenwarr/redo;
+    maintainers = with maintainers; [
+      andrewchambers
+      ck3d
+    ];
+    license = licenses.asl20;
   };
 }
diff --git a/pkgs/development/tools/build-managers/redo-apenwarr/mkdocs-exclude.nix b/pkgs/development/tools/build-managers/redo-apenwarr/mkdocs-exclude.nix
new file mode 100644
index 000000000000..d8c79e33dffb
--- /dev/null
+++ b/pkgs/development/tools/build-managers/redo-apenwarr/mkdocs-exclude.nix
@@ -0,0 +1,20 @@
+{ pythonPackages, isPy3k, pkgs }:
+
+pythonPackages.buildPythonPackage rec {
+  name = "mkdocs-exclude";
+  disabled = isPy3k;
+
+  src = pkgs.fetchFromGitHub {
+    owner = "apenwarr";
+    repo = "mkdocs-exclude";
+    rev = "fdd67d2685ff706de126e99daeaaaf3f6f7cf3ae";
+    sha256 = "1phhl79xf4xq8w2sb2w5zm4bahcr33gsbxkz7dl1dws4qhcbxrfd";
+  };
+
+  buildInputs = with pkgs; [
+    mkdocs
+  ];
+
+  # error: invalid command 'test'
+  doCheck = false;
+}

From 13866ed4cfb5aa80b366ee7848b3ce179f33d3d3 Mon Sep 17 00:00:00 2001
From: Michael Fellinger <michael.fellinger@iohk.io>
Date: Fri, 13 Sep 2019 16:01:13 +0200
Subject: [PATCH 062/152] gem-config: fix zookeeper for gcc-8 (#68642)

---
 pkgs/development/ruby-modules/gem-config/default.nix  |  8 +++++++-
 .../gem-config/zookeeper-ftbfs-with-gcc-8.patch       | 11 +++++++++++
 2 files changed, 18 insertions(+), 1 deletion(-)
 create mode 100644 pkgs/development/ruby-modules/gem-config/zookeeper-ftbfs-with-gcc-8.patch

diff --git a/pkgs/development/ruby-modules/gem-config/default.nix b/pkgs/development/ruby-modules/gem-config/default.nix
index 642d5515cb87..e9f57d2b85fb 100644
--- a/pkgs/development/ruby-modules/gem-config/default.nix
+++ b/pkgs/development/ruby-modules/gem-config/default.nix
@@ -19,7 +19,7 @@
 
 { lib, fetchurl, writeScript, ruby, kerberos, libxml2, libxslt, python, stdenv, which
 , libiconv, postgresql, v8_3_16_14, clang, sqlite, zlib, imagemagick
-, pkgconfig , ncurses, xapian, gpgme, utillinux, fetchpatch, tzdata, icu, libffi
+, pkgconfig , ncurses, xapian, gpgme, utillinux, tzdata, icu, libffi
 , cmake, libssh2, openssl, mysql, darwin, git, perl, pcre, gecode_3, curl
 , msgpack, qt59, libsodium, snappy, libossp_uuid, lxc, libpcap, xorg, gtk2, buildRubyGem
 , cairo, re2, rake, gobject-introspection, gdk-pixbuf, zeromq, czmq, graphicsmagick, libcxx
@@ -613,5 +613,11 @@ in
 
   zookeeper = attrs: {
     buildInputs = stdenv.lib.optionals stdenv.isDarwin [ darwin.cctools ];
+    dontBuild = false;
+    postPatch = ''
+      sed -i ext/extconf.rb -e "4a \
+        FileUtils.cp '${./zookeeper-ftbfs-with-gcc-8.patch}', 'patches/zkc-3.4.5-gcc-8.patch'
+      "
+    '';
   };
 }
diff --git a/pkgs/development/ruby-modules/gem-config/zookeeper-ftbfs-with-gcc-8.patch b/pkgs/development/ruby-modules/gem-config/zookeeper-ftbfs-with-gcc-8.patch
new file mode 100644
index 000000000000..badb76ccfd20
--- /dev/null
+++ b/pkgs/development/ruby-modules/gem-config/zookeeper-ftbfs-with-gcc-8.patch
@@ -0,0 +1,11 @@
+--- zkc-3.4.5/c/src/zookeeper.c 2019-09-13 12:05:20.647034862 +0200
++++ zkc-3.4.5/c/src/zookeeper.c 2019-09-13 12:05:49.125360269 +0200
+@@ -3418,7 +3418,7 @@
+ 
+ static const char* format_endpoint_info(const struct sockaddr_storage* ep)
+ {
+-    static char buf[128];
++    static char buf[128 + 6]; // include space for the port :xxxxxx
+     char addrstr[128];
+     void *inaddr;
+ #ifdef WIN32

From ef394409b2d8bd44c0f78fba62dca884c6ec109e Mon Sep 17 00:00:00 2001
From: WilliButz <wbutz@cyberfnord.de>
Date: Fri, 13 Sep 2019 15:59:08 +0200
Subject: [PATCH 063/152] nixos/tests/mumble: update test to use
 systemd-journal

---
 nixos/tests/mumble.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/nixos/tests/mumble.nix b/nixos/tests/mumble.nix
index dadd16fd9a0c..652d49a24b1c 100644
--- a/nixos/tests/mumble.nix
+++ b/nixos/tests/mumble.nix
@@ -63,8 +63,8 @@ in
     $client2->sendChars("y");
 
     # Find clients in logs
-    $server->waitUntilSucceeds("grep -q 'client1' /var/log/murmur/murmurd.log");
-    $server->waitUntilSucceeds("grep -q 'client2' /var/log/murmur/murmurd.log");
+    $server->waitUntilSucceeds("journalctl -eu murmur -o cat | grep -q client1");
+    $server->waitUntilSucceeds("journalctl -eu murmur -o cat | grep -q client2");
 
     $server->sleep(5); # wait to get screenshot
     $client1->screenshot("screen1");

From c6d516dfc49c1d84ef03605e0d2b8aa3ea8ae431 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Bj=C3=B8rn=20Forsman?= <bjorn.forsman@gmail.com>
Date: Tue, 10 Sep 2019 08:08:01 +0200
Subject: [PATCH 064/152] wrapQtAppsHook: use `patchelf --print-interpreter`
 instead of `isELFExec`

Some executables are built as PIEs (e.g. keepassxc) and are technically
isELFDyn, not isELFExec. Without this change those executables will not
be wrapped.
---
 pkgs/development/libraries/qt-5/hooks/wrap-qt-apps-hook.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/libraries/qt-5/hooks/wrap-qt-apps-hook.sh b/pkgs/development/libraries/qt-5/hooks/wrap-qt-apps-hook.sh
index eb6e7715385c..7c87c1a92344 100644
--- a/pkgs/development/libraries/qt-5/hooks/wrap-qt-apps-hook.sh
+++ b/pkgs/development/libraries/qt-5/hooks/wrap-qt-apps-hook.sh
@@ -82,7 +82,7 @@ wrapQtAppsHook() {
 
         find "$targetDir" -executable -print0 | while IFS= read -r -d '' file
         do
-            isELFExec "$file" || continue
+            patchelf --print-interpreter "$file" >/dev/null 2>&1 || continue
 
             if [ -f "$file" ]
             then

From d6e65ec4a0cfed817858c91851a4e3e8c4d46632 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Bj=C3=B8rn=20Forsman?= <bjorn.forsman@gmail.com>
Date: Tue, 10 Sep 2019 08:20:50 +0200
Subject: [PATCH 065/152] wrapQtAppsHook: skip directories

Prevents messages like this in the build log:

  grep: <PATH>/bin: Is a directory
---
 pkgs/development/libraries/qt-5/hooks/wrap-qt-apps-hook.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/libraries/qt-5/hooks/wrap-qt-apps-hook.sh b/pkgs/development/libraries/qt-5/hooks/wrap-qt-apps-hook.sh
index 7c87c1a92344..d7a44cace036 100644
--- a/pkgs/development/libraries/qt-5/hooks/wrap-qt-apps-hook.sh
+++ b/pkgs/development/libraries/qt-5/hooks/wrap-qt-apps-hook.sh
@@ -80,7 +80,7 @@ wrapQtAppsHook() {
     do
         [ -d "$targetDir" ] || continue
 
-        find "$targetDir" -executable -print0 | while IFS= read -r -d '' file
+        find "$targetDir" -type f -executable -print0 | while IFS= read -r -d '' file
         do
             patchelf --print-interpreter "$file" >/dev/null 2>&1 || continue
 

From cec85241129a2716ca6af34260fe4fe189080bb6 Mon Sep 17 00:00:00 2001
From: WilliButz <wbutz@cyberfnord.de>
Date: Fri, 13 Sep 2019 17:14:58 +0200
Subject: [PATCH 066/152] sambaMaster: remove outdated package

---
 pkgs/servers/samba/master.nix   | 29 -----------------------------
 pkgs/top-level/aliases.nix      |  1 +
 pkgs/top-level/all-packages.nix |  2 --
 3 files changed, 1 insertion(+), 31 deletions(-)
 delete mode 100644 pkgs/servers/samba/master.nix

diff --git a/pkgs/servers/samba/master.nix b/pkgs/servers/samba/master.nix
deleted file mode 100644
index 21038a0f2183..000000000000
--- a/pkgs/servers/samba/master.nix
+++ /dev/null
@@ -1,29 +0,0 @@
-{ fetchFromGitHub
-, samba4
-, nettle
-} :
-
-  (samba4.overrideAttrs(oldAttrs: rec {
-    name = "samba-unstable-${version}";
-    version = "2018-03-09";
-
-    src = fetchFromGitHub {
-      owner = "samba-team";
-      repo = "samba";
-      rev = "9e954bcbf43d67a18ee55f84cda0b09028f96b92";
-      sha256 = "07j1pwm4kax6pq21gq9gpmp7dhj5afdyvkhgyl3yz334mb41q11g";
-    };
-
-    # Remove unnecessary install flags, same as <4.8 patch
-    postPatch = oldAttrs.postPatch + ''
-      sed -i '423,433d' dynconfig/wscript
-    '';
-
-    patches = [ ./4.x-no-persistent-install.patch ];
-    buildInputs = [ nettle ] ++ oldAttrs.buildInputs;
-    meta.branch = "master";
-  })).override {
-    # samba4.8+ removed the ability to disable LDAP.
-    # Enable for base derivation here:
-    enableLDAP = true;
-  }
diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix
index ac88446242e1..d2d438cf099c 100644
--- a/pkgs/top-level/aliases.nix
+++ b/pkgs/top-level/aliases.nix
@@ -317,6 +317,7 @@ mapAliases ({
   s6PortableUtils = s6-portable-utils; # added 2018-07-23
   sagemath = sage; # added 2018-10-27
   sam = deadpixi-sam; # added 2018-04-25
+  sambaMaster = throw "removed 2019-09-13: outdated and no longer needed";
   samsungUnifiedLinuxDriver = samsung-unified-linux-driver; # added 2016-01-25
   saneBackends = sane-backends; # added 2016-01-02
   saneBackendsGit = sane-backends-git; # added 2016-01-02
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index d4a52e9f419d..57fa2baeafec 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -15113,8 +15113,6 @@ in
     python = python3;
   };
 
-  sambaMaster = callPackage ../servers/samba/master.nix { };
-
   samba = samba4;
 
   # A lightweight Samba 3, useful for non-Linux-based OSes.

From b31931adf5093f43834ea6911cf953f6f8c75da7 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Fri, 13 Sep 2019 16:31:01 +0100
Subject: [PATCH 067/152] python.pkgs.pylint_1_9: fix incorrect checksum

was not updated in 08d556c0e8590a2aabd321c3b7b4f40ae6ea1f92
---
 pkgs/development/python-modules/pylint/1.9.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/pylint/1.9.nix b/pkgs/development/python-modules/pylint/1.9.nix
index 96f50568f787..571a9446e116 100644
--- a/pkgs/development/python-modules/pylint/1.9.nix
+++ b/pkgs/development/python-modules/pylint/1.9.nix
@@ -8,7 +8,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ee1e85575587c5b58ddafa25e1c1b01691ef172e139fc25585e5d3f02451da93";
+    sha256 = "004kfapkqxqy2s85pmddqv0fabxdxywxrlbi549p0v237pr2v94p";
   };
 
   checkInputs = [ pytest pytestrunner pyenchant ];

From 2756c3054c338c29e39d7f9d2aea465684411a87 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Christian=20K=C3=B6gler?= <ck3d@gmx.de>
Date: Fri, 13 Sep 2019 17:39:27 +0200
Subject: [PATCH 068/152] virtualboxGuestAdditions: fix compilation with kernel
 5.2

---
 .../virtualization/virtualbox/guest-additions/default.nix    | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix b/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix
index e7f6fad79f90..ad860b07bdf6 100644
--- a/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix
+++ b/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix
@@ -35,6 +35,11 @@ stdenv.mkDerivation {
   nativeBuildInputs = [ patchelf makeWrapper ];
   buildInputs = [ cdrkit ] ++ kernel.moduleBuildDependencies;
 
+  postPatch = ''
+    substituteInPlace src/vboxguest-${version}/vboxvideo/vbox_ttm.c \
+      --replace "<ttm/" "<drm/ttm/"
+  '';
+
   unpackPhase = ''
     ${if stdenv.hostPlatform.system == "i686-linux" || stdenv.hostPlatform.system == "x86_64-linux" then ''
         isoinfo -J -i $src -x /VBoxLinuxAdditions.run > ./VBoxLinuxAdditions.run

From 08dab35cd470c45ba03ff2e7f2ea31be293eb3d2 Mon Sep 17 00:00:00 2001
From: Daniel Schaefer <git@danielschaefer.me>
Date: Fri, 13 Sep 2019 17:40:16 +0200
Subject: [PATCH 069/152] xfstests: 2018-04-11 -> 2019-09-08

---
 pkgs/tools/misc/xfstests/default.nix | 9 ++++++---
 1 file changed, 6 insertions(+), 3 deletions(-)

diff --git a/pkgs/tools/misc/xfstests/default.nix b/pkgs/tools/misc/xfstests/default.nix
index 3be931a362be..204059913318 100644
--- a/pkgs/tools/misc/xfstests/default.nix
+++ b/pkgs/tools/misc/xfstests/default.nix
@@ -4,12 +4,12 @@
 , time, utillinux, which, writeScript, xfsprogs, runtimeShell }:
 
 stdenv.mkDerivation {
-  name = "xfstests-2018-04-11";
+  name = "xfstests-2019-09-08";
 
   src = fetchgit {
     url = "git://git.kernel.org/pub/scm/fs/xfs/xfstests-dev.git";
-    rev = "fdf6d4bc862bb3269c95986fdaf1c59271762ad6";
-    sha256 = "16j1kcmj0xq6s2qw4hll5r5cz7q4vbbsy2nh1g5aaq7xsl3h8mhb";
+    rev = "0837e907988a5f410cae0ae714f42f9c4242e072";
+    sha256 = "1f5cv0vwc1g9difzp69k49rc5nfd08y72vdg318j25nv3rwv7wc9";
   };
 
   nativeBuildInputs = [
@@ -23,6 +23,9 @@ stdenv.mkDerivation {
   enableParallelBuilding = true;
 
   patchPhase = ''
+    substituteInPlace Makefile \
+      --replace "cp include/install-sh ." "cp -f include/install-sh ."
+
     # Patch the destination directory
     sed -i include/builddefs.in -e "s|^PKG_LIB_DIR\s*=.*|PKG_LIB_DIR=$out/lib/xfstests|"
 

From 55a636055c1023ee054d7a20c3b9a7c85227d01c Mon Sep 17 00:00:00 2001
From: danme <daniel@menke-online.com>
Date: Fri, 13 Sep 2019 17:52:15 +0200
Subject: [PATCH 070/152] giv: removed

Because of a build error dropped for 19.09 (#68361).
---
 pkgs/applications/graphics/giv/build.patch | 22 --------------
 pkgs/applications/graphics/giv/default.nix | 34 ----------------------
 pkgs/top-level/all-packages.nix            |  2 --
 3 files changed, 58 deletions(-)
 delete mode 100644 pkgs/applications/graphics/giv/build.patch
 delete mode 100644 pkgs/applications/graphics/giv/default.nix

diff --git a/pkgs/applications/graphics/giv/build.patch b/pkgs/applications/graphics/giv/build.patch
deleted file mode 100644
index f57689fd3fa9..000000000000
--- a/pkgs/applications/graphics/giv/build.patch
+++ /dev/null
@@ -1,22 +0,0 @@
-Get the environment propagated to scons forked childs, and correct the dicom plugin about
-a typedef of size_t that failed at least on x86_64-linux.
-
-diff --git a/SConstruct b/SConstruct
-index 9e752d6..f93f27f 100644
---- a/SConstruct
-+++ b/SConstruct
-@@ -9,13 +9,7 @@ else:
- 
- commit_id = os.popen('git rev-parse HEAD').read().replace('\n','')
- 
--env = Environment(LIBPATH=[],
--                  CPPFLAGS = cppflags + ['-Wno-deprecated-declarations',
--                                         '-Wno-reorder',
--                                         '-Wno-unused-but-set-variable',
--                                         '-Wno-unused-function'],
--                  CXXFLAGS=['-std=c++1y']
--                  )
-+env = Environment(ENV = os.environ)
- 
- env['SBOX'] = False
- env['COMMITIDSHORT'] = commit_id[0:6]
diff --git a/pkgs/applications/graphics/giv/default.nix b/pkgs/applications/graphics/giv/default.nix
deleted file mode 100644
index 9ba7dbed37b3..000000000000
--- a/pkgs/applications/graphics/giv/default.nix
+++ /dev/null
@@ -1,34 +0,0 @@
-{ stdenv, fetchFromGitHub, gdk-pixbuf, scons, pkgconfig, gtk2, glib
-, pcre, cfitsio, perl, gob2, vala, libtiff, json-glib }:
-
-stdenv.mkDerivation rec {
-  pname = "giv";
-  version = "0.9.26";
-
-  src = fetchFromGitHub {
-    owner = "dov";
-    repo = "giv";
-    rev = "v${version}";
-    sha256 = "1sfm8j3hvqij6z3h8xz724d7hjqqbzljl2a6pp4yjpnnrxksnic2";
-  };
-
-  hardeningDisable = [ "format" ];
-
-  prePatch = ''
-    sed -i s,/usr/bin/perl,${perl}/bin/perl, doc/eperl
-    sed -i s,/usr/local,$out, SConstruct
-  '';
-
-  patches = [ ./build.patch ];
-
-  nativeBuildInputs = [ scons pkgconfig vala perl gob2 ];
-  buildInputs = [ gdk-pixbuf gtk2 glib pcre cfitsio libtiff json-glib ];
-
-  meta = with stdenv.lib; {
-    description = "Cross platform image and hierarchical vector viewer based";
-    homepage = http://giv.sourceforge.net/giv/;
-    license = licenses.gpl2Plus;
-    maintainers = with maintainers; [ ];
-    platforms = with platforms; linux;
-  };
-}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 2e8b13c687e4..7121166cb663 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -18432,8 +18432,6 @@ in
 
   inherit (gnome3) gitg;
 
-  giv = callPackage ../applications/graphics/giv { };
-
   gmrun = callPackage ../applications/misc/gmrun {};
 
   gnucash = callPackage ../applications/office/gnucash {

From d38121a871aaed25570408f22b9f472b1d1e99a3 Mon Sep 17 00:00:00 2001
From: nyanloutre <paul@nyanlout.re>
Date: Fri, 13 Sep 2019 17:37:51 +0200
Subject: [PATCH 071/152] jackett: 0.11.589 -> 0.11.687

Also migrate to standalone binary
---
 pkgs/servers/jackett/default.nix | 30 ++++++++++++++++++++----------
 1 file changed, 20 insertions(+), 10 deletions(-)

diff --git a/pkgs/servers/jackett/default.nix b/pkgs/servers/jackett/default.nix
index 0299c0281480..6aaae932906b 100644
--- a/pkgs/servers/jackett/default.nix
+++ b/pkgs/servers/jackett/default.nix
@@ -1,30 +1,40 @@
-{ stdenv, fetchurl, mono, curl, makeWrapper }:
+{ lib, stdenv, fetchurl, makeWrapper, curl, icu60, openssl, zlib }:
 
 stdenv.mkDerivation rec {
   pname = "jackett";
-  version = "0.11.589";
+  version = "0.11.687";
 
   src = fetchurl {
-    url = "https://github.com/Jackett/Jackett/releases/download/v${version}/Jackett.Binaries.Mono.tar.gz";
-    sha256 = "14lj33xmhf35pq781wvzyw983yff447mc253x0ppi3b5rwkrgkyz";
+    url = "https://github.com/Jackett/Jackett/releases/download/v${version}/Jackett.Binaries.LinuxAMDx64.tar.gz";
+    sha256 = "0wq6rc12dn5yxa6yyabv234xw5nrsbvlrpgfjppvw3i4vy2cfzh9";
   };
 
   buildInputs = [ makeWrapper ];
 
   installPhase = ''
-    mkdir -p $out/{bin,share/${pname}-${version}}
-    cp -r * $out/share/${pname}-${version}
+    mkdir -p $out/{bin,opt/${pname}-${version}}
+    cp -r * $out/opt/${pname}-${version}
 
-    makeWrapper "${mono}/bin/mono" $out/bin/Jackett \
-      --add-flags "$out/share/${pname}-${version}/JackettConsole.exe" \
-      --prefix LD_LIBRARY_PATH ':' "${curl.out}/lib"
+    makeWrapper "$out/opt/${pname}-${version}/jackett" $out/bin/Jackett \
+      --prefix LD_LIBRARY_PATH ':' "${curl.out}/lib:${icu60.out}/lib:${openssl.out}/lib:${zlib.out}/lib"
+  '';
+
+  preFixup = let
+    libPath = lib.makeLibraryPath [
+      stdenv.cc.cc.lib  # libstdc++.so.6
+    ];
+  in ''
+    patchelf \
+      --set-interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" \
+      --set-rpath "${libPath}" \
+      $out/opt/${pname}-${version}/jackett
   '';
 
   meta = with stdenv.lib; {
     description = "API Support for your favorite torrent trackers.";
     homepage = https://github.com/Jackett/Jackett/;
     license = licenses.gpl2;
-    maintainers = with maintainers; [ edwtjo ];
+    maintainers = with maintainers; [ edwtjo nyanloutre ];
     platforms = platforms.all;
   };
 }

From 30f3e4a3a6df1b36f5e9105bc4533d37430af67d Mon Sep 17 00:00:00 2001
From: Jonathan Ringer <jonringer117@gmail.com>
Date: Fri, 13 Sep 2019 09:05:12 -0700
Subject: [PATCH 072/152] pythonPackages.zeep: fix pytest5 tests

---
 pkgs/development/python-modules/zeep/default.nix | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/pkgs/development/python-modules/zeep/default.nix b/pkgs/development/python-modules/zeep/default.nix
index 1aa03983f68a..72a6e1ba2290 100644
--- a/pkgs/development/python-modules/zeep/default.nix
+++ b/pkgs/development/python-modules/zeep/default.nix
@@ -1,5 +1,6 @@
 { fetchPypi
 , lib
+, fetchpatch
 , buildPythonPackage
 , isPy3k
 , appdirs
@@ -33,6 +34,13 @@ buildPythonPackage rec {
     sha256 = "0e98669cfeb60756231ae185498f9ae21b30b2681786b8de58ed34c3b93e41dd";
   };
 
+  patches = [
+    ( fetchpatch {
+        url = "https://github.com/mvantellingen/python-zeep/pull/1006/commits/ba7edd6bf2b31023b31e8f17c161e1d6d5af3d29.patch";
+        sha256 = "1j0jd5hmh457im9sbawaqf6pnfy36fhr9wqdim8wk5da9ixr0ajs";
+     })
+  ];
+
   propagatedBuildInputs = [
     appdirs
     attrs

From 2b921136f0b31b36ee94cec3158b0507b1e89d85 Mon Sep 17 00:00:00 2001
From: Vasiliy Yorkin <vasiliy.yorkin@gmail.com>
Date: Fri, 13 Sep 2019 15:45:47 +0300
Subject: [PATCH 073/152] ocamlPackages.ppx_deriving_protobuf: init at 2.7

---
 .../ppx_deriving_protobuf/default.nix         | 23 +++++++++++++++++++
 pkgs/top-level/ocaml-packages.nix             |  2 ++
 2 files changed, 25 insertions(+)
 create mode 100644 pkgs/development/ocaml-modules/ppx_deriving_protobuf/default.nix

diff --git a/pkgs/development/ocaml-modules/ppx_deriving_protobuf/default.nix b/pkgs/development/ocaml-modules/ppx_deriving_protobuf/default.nix
new file mode 100644
index 000000000000..4af711ce3950
--- /dev/null
+++ b/pkgs/development/ocaml-modules/ppx_deriving_protobuf/default.nix
@@ -0,0 +1,23 @@
+{ stdenv, fetchFromGitHub, buildDunePackage, cppo, ppx_tools, ppx_deriving
+, ppxfind }:
+
+buildDunePackage rec {
+  pname = "ppx_deriving_protobuf";
+  version = "2.7";
+
+  src = fetchFromGitHub {
+    owner = "ocaml-ppx";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "0aq4f3gbkhhai0c8i5mcw2kpqy8l610f4dknwkrxh0nsizwbwryn";
+  };
+
+  buildInputs = [ cppo ppx_tools ppxfind ppx_deriving ];
+
+  meta = with stdenv.lib; {
+    homepage = "https://github.com/ocaml-ppx/ppx_deriving_protobuf";
+    description = "A Protocol Buffers codec generator for OCaml";
+    license = licenses.mit;
+    maintainers = [ maintainers.vyorkin ];
+  };
+}
diff --git a/pkgs/top-level/ocaml-packages.nix b/pkgs/top-level/ocaml-packages.nix
index 4ece950f09e2..728f6f7712d0 100644
--- a/pkgs/top-level/ocaml-packages.nix
+++ b/pkgs/top-level/ocaml-packages.nix
@@ -694,6 +694,8 @@ let
       then callPackage ../development/ocaml-modules/ppx_deriving {}
       else null;
 
+    ppx_deriving_protobuf = callPackage ../development/ocaml-modules/ppx_deriving_protobuf {};
+
     ppx_deriving_yojson = callPackage ../development/ocaml-modules/ppx_deriving_yojson {};
 
     ppx_gen_rec = callPackage ../development/ocaml-modules/ppx_gen_rec {};

From d5817fa95a5b1ec67cad19aabc66dd9a8fa7e702 Mon Sep 17 00:00:00 2001
From: zimbatm <zimbatm@zimbatm.com>
Date: Fri, 13 Sep 2019 16:33:24 +0000
Subject: [PATCH 074/152] rustup: 1.18.3 -> 1.19.0

---
 .../0001-dynamically-patchelf-binaries.patch       | 14 +++++++-------
 pkgs/development/tools/rust/rustup/default.nix     |  6 +++---
 2 files changed, 10 insertions(+), 10 deletions(-)

diff --git a/pkgs/development/tools/rust/rustup/0001-dynamically-patchelf-binaries.patch b/pkgs/development/tools/rust/rustup/0001-dynamically-patchelf-binaries.patch
index 74da8d6102e7..d46ad59109e9 100644
--- a/pkgs/development/tools/rust/rustup/0001-dynamically-patchelf-binaries.patch
+++ b/pkgs/development/tools/rust/rustup/0001-dynamically-patchelf-binaries.patch
@@ -1,8 +1,8 @@
 diff --git a/src/dist/component/package.rs b/src/dist/component/package.rs
-index e0fdea28..38d9d0e4 100644
+index 4b432785..fa45e87e 100644
 --- a/src/dist/component/package.rs
 +++ b/src/dist/component/package.rs
-@@ -104,10 +104,11 @@ impl Package for DirectoryPackage {
+@@ -109,10 +109,11 @@ impl Package for DirectoryPackage {
              match &*part.0 {
                  "file" => {
                      if self.copy {
@@ -16,10 +16,10 @@ index e0fdea28..38d9d0e4 100644
                  }
                  "dir" => {
                      if self.copy {
-@@ -132,6 +133,22 @@ impl Package for DirectoryPackage {
+@@ -135,6 +136,22 @@ impl Package for DirectoryPackage {
      }
  }
-
+ 
 +fn nix_patchelf_if_needed(dest_path: &Path, src_path: &Path) {
 +    let is_bin = if let Some(p) = src_path.parent() {
 +        p.ends_with("bin")
@@ -36,6 +36,6 @@ index e0fdea28..38d9d0e4 100644
 +    }
 +}
 +
- // On Unix we need to set up the file permissions correctly so
- // binaries are executable and directories readable. This shouldn't be
- // necessary: the source files *should* have the right permissions,
+ #[derive(Debug)]
+ pub struct TarPackage<'a>(DirectoryPackage, temp::Dir<'a>);
+ 
diff --git a/pkgs/development/tools/rust/rustup/default.nix b/pkgs/development/tools/rust/rustup/default.nix
index 0bf1c61c9598..ec0eb08bf238 100644
--- a/pkgs/development/tools/rust/rustup/default.nix
+++ b/pkgs/development/tools/rust/rustup/default.nix
@@ -4,16 +4,16 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "rustup";
-  version = "1.18.3";
+  version = "1.19.0";
 
   src = fetchFromGitHub {
     owner = "rust-lang";
     repo = "rustup.rs";
     rev = version;
-    sha256 = "062l893i9czm1lm0x3arj3vfnjg3fg8q8xvq3y4adakmk6yrcc4x";
+    sha256 = "1c0qz9s09ikgy23yssd57v7b5s005y128sldmq0xd9i1fryp129z";
   };
 
-  cargoSha256 = "1zwlr0zxc97m6xr28ryq5hkrvcns6qg68h7w09sga23xinm3fr11";
+  cargoSha256 = "0rjm01pnb2w39c0jrscmhhsx9gsi3sl9cxd838m77h9pzwsp1h40";
 
   nativeBuildInputs = [ pkgconfig ];
 

From 8e06d7ee3bac6755a3133ae7a272d45a3943f8d7 Mon Sep 17 00:00:00 2001
From: Jonathan Ringer <jonringer117@gmail.com>
Date: Fri, 13 Sep 2019 10:07:30 -0700
Subject: [PATCH 075/152] python3Package.hug: 2.4.8 -> 2.6.0

---
 pkgs/development/python-modules/hug/default.nix | 13 ++++++-------
 1 file changed, 6 insertions(+), 7 deletions(-)

diff --git a/pkgs/development/python-modules/hug/default.nix b/pkgs/development/python-modules/hug/default.nix
index 1b9542824c07..5638447bceb8 100644
--- a/pkgs/development/python-modules/hug/default.nix
+++ b/pkgs/development/python-modules/hug/default.nix
@@ -1,27 +1,26 @@
-{ stdenv
-, buildPythonPackage
-, fetchPypi
-, isPy27
+{ lib , buildPythonPackage, fetchPypi, isPy27
 , falcon
+, pytestrunner
 , requests
 }:
 
 buildPythonPackage rec {
   pname = "hug";
-  version = "2.4.8";
+  version = "2.6.0";
   disabled = isPy27;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2b33904660d07df3a6a998a52d1a36e2855e56dc9ffc4eddb2158e32d1ce7621";
+    sha256 = "0iamrzjy8z1xibynkgfl6cn2sbm66awxbp75b26pi32fc41d0k50";
   };
 
+  nativeBuildInputs = [ pytestrunner ];
   propagatedBuildInputs = [ falcon requests ];
 
   # tests are not shipped in the tarball
   doCheck = false;
 
-  meta = with stdenv.lib; {
+  meta = with lib; {
     description = "A Python framework that makes developing APIs as simple as possible, but no simpler";
     homepage = https://github.com/timothycrosley/hug;
     license = licenses.mit;

From a5b2e090ec895ceee728c95fca3384748ac655da Mon Sep 17 00:00:00 2001
From: Daniel Schaefer <git@danielschaefer.me>
Date: Fri, 13 Sep 2019 19:08:57 +0200
Subject: [PATCH 076/152] whitebox: 0.9.0 -> 0.16.0 (#68682)

---
 pkgs/applications/gis/whitebox-tools/default.nix | 11 +++++++----
 1 file changed, 7 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/gis/whitebox-tools/default.nix b/pkgs/applications/gis/whitebox-tools/default.nix
index 4c7f9cde5ce7..84d7f3ddb499 100644
--- a/pkgs/applications/gis/whitebox-tools/default.nix
+++ b/pkgs/applications/gis/whitebox-tools/default.nix
@@ -1,18 +1,21 @@
 { stdenv, rustPlatform , fetchFromGitHub, Security }:
 rustPlatform.buildRustPackage rec {
   pname = "whitebox_tools";
-  version = "0.9.0";
+  version = "0.16.0";
 
   src = fetchFromGitHub {
     owner = "jblindsay";
     repo = "whitebox-tools";
-    rev = "6221cdf327be70f0ee4f2053b76bfa01c3f37caa";
-    sha256 = "1423ga964mz7qkl88vkcm8qfprsksx04aq4sz9v5ghnmdzzvl89x";
+    rev = "v${version}";
+    sha256 = "1vs4hf2x3qjnffs9kjx56rzl67kpcy8xvng6p0r9fp9mfnblxg6j";
   };
 
   buildInputs = stdenv.lib.optional stdenv.isDarwin Security;
 
-  cargoSha256 = "11m13h9b75xz8dfisfcykar53qsl1crrp3l75s73gkkkvczlfd24";
+  cargoSha256 = "1y3vk8bzsaisx7wrncjxcqdh355f2wk4n59vq5qgj37fph2zpy7f";
+
+  # failures: structures::polyline::test::test_polyline_split
+  doCheck = false;
 
   meta = with stdenv.lib; {
     description = "An advanced geospatial data analysis platform";

From 19ca6c62b055c539c0cc4844c1f8471e71322e1f Mon Sep 17 00:00:00 2001
From: Linus Heckemann <git@sphalerite.org>
Date: Fri, 13 Sep 2019 19:02:18 +0200
Subject: [PATCH 077/152] netatalk: use system netatalk

---
 pkgs/tools/filesystems/netatalk/default.nix | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/filesystems/netatalk/default.nix b/pkgs/tools/filesystems/netatalk/default.nix
index 42889714e924..0a4207d0715f 100644
--- a/pkgs/tools/filesystems/netatalk/default.nix
+++ b/pkgs/tools/filesystems/netatalk/default.nix
@@ -1,6 +1,6 @@
 { fetchurl, stdenv, autoreconfHook, pkgconfig, perl, python
 , db, libgcrypt, avahi, libiconv, pam, openssl, acl
-, ed, glibc
+, ed, glibc, libevent
 }:
 
 stdenv.mkDerivation rec{
@@ -18,12 +18,13 @@ stdenv.mkDerivation rec{
 
   nativeBuildInputs = [ autoreconfHook pkgconfig perl python python.pkgs.wrapPython ];
 
-  buildInputs = [ db libgcrypt avahi libiconv pam openssl acl ];
+  buildInputs = [ db libgcrypt avahi libiconv pam openssl acl libevent ];
 
   configureFlags = [
     "--with-bdb=${db.dev}"
     "--with-ssl-dir=${openssl.dev}"
     "--with-lockfile=/run/lock/netatalk"
+    "--with-libevent=${libevent.dev}"
     "--localstatedir=/var/lib"
   ];
 

From 5e67b340e8c1a56634e863bff23c19aee33d3eaa Mon Sep 17 00:00:00 2001
From: Jonathan Ringer <jonringer117@gmail.com>
Date: Fri, 13 Sep 2019 10:24:26 -0700
Subject: [PATCH 078/152] pythonPackages.pyarrow: fix build

---
 pkgs/development/python-modules/pyarrow/default.nix | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/pkgs/development/python-modules/pyarrow/default.nix b/pkgs/development/python-modules/pyarrow/default.nix
index 44acbe5c7a9d..5590337951b4 100644
--- a/pkgs/development/python-modules/pyarrow/default.nix
+++ b/pkgs/development/python-modules/pyarrow/default.nix
@@ -25,6 +25,8 @@ buildPythonPackage rec {
     "-DCMAKE_POLICY_DEFAULT_CMP0025=NEW"
   ];
 
+  dontUseCmakeConfigure = true;
+
   preBuild = ''
     export PYARROW_PARALLEL=$NIX_BUILD_CORES
   '';

From b9e81b2138fa1f3475e9dcbdfc764fdd8a47e2bc Mon Sep 17 00:00:00 2001
From: Eelco Dolstra <edolstra@gmail.com>
Date: Fri, 13 Sep 2019 20:13:14 +0200
Subject: [PATCH 079/152] nixFlakes: 2.3pre20190830_04np4n6 ->
 2.4pre20190913_a25c022

---
 pkgs/tools/package-management/nix/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/tools/package-management/nix/default.nix b/pkgs/tools/package-management/nix/default.nix
index 69489e271cba..c038249b69f7 100644
--- a/pkgs/tools/package-management/nix/default.nix
+++ b/pkgs/tools/package-management/nix/default.nix
@@ -200,13 +200,13 @@ in rec {
   });
 
   nixFlakes = lib.lowPrio (callPackage common rec {
-    name = "nix-2.3${suffix}";
-    suffix = "pre20190830_04np4n6";
+    name = "nix-2.4${suffix}";
+    suffix = "pre20190913_a25c022";
     src = fetchFromGitHub {
       owner = "NixOS";
       repo = "nix";
-      rev = "aa82f8b2d2a2c42f0d713e8404b668cef1a4b108";
-      hash = "sha256-09ZHwpxf9pRDacCSGTHYx+fnKYgxKx8G37Jqb4wl1xI=";
+      rev = "a25c022af3fa0a35be406942869edae1bdff2cf8";
+      hash = "sha256-HIvgrkXxQ57TPcf2pn9PkSDzM4XOCwXa1zYyIvcAdpg=";
     };
     fromGit = true;
 

From 9378ff1cb5d4ca7f041fe7611de6072fa4a8113d Mon Sep 17 00:00:00 2001
From: WilliButz <wbutz@cyberfnord.de>
Date: Fri, 13 Sep 2019 20:54:14 +0200
Subject: [PATCH 080/152] samba4Full: fix build

The pkgconfig requirements for glusterfs-api were not satisfied without
uuid, resulting in Waf not setting the correct API version for glusterfs
during the build and consequently incompatible function calls in samba.

Co-authored-by: Franz Pletz <fpletz@fnordicwalking.de>
---
 pkgs/servers/samba/4.x.nix | 54 ++++++++++++++++++--------------------
 1 file changed, 26 insertions(+), 28 deletions(-)

diff --git a/pkgs/servers/samba/4.x.nix b/pkgs/servers/samba/4.x.nix
index 9bec174a58aa..63ac8c53317e 100644
--- a/pkgs/servers/samba/4.x.nix
+++ b/pkgs/servers/samba/4.x.nix
@@ -3,7 +3,7 @@
 , docbook_xml_dtd_42, readline
 , popt, iniparser, libbsd, libarchive, libiconv, gettext
 , krb5Full, zlib, openldap, cups, pam, avahi, acl, libaio, fam, libceph, glusterfs
-, gnutls, ncurses, libunwind, systemd, jansson, lmdb, gpgme
+, gnutls, ncurses, libunwind, systemd, jansson, lmdb, gpgme, libuuid
 
 , enableLDAP ? false
 , enablePrinting ? false
@@ -29,28 +29,27 @@ stdenv.mkDerivation rec {
 
   outputs = [ "out" "dev" "man" ];
 
-  patches =
-    [ ./4.x-no-persistent-install.patch
-      ./patch-source3__libads__kerberos_keytab.c.patch
-      ./4.x-no-persistent-install-dynconfig.patch
-      ./4.x-fix-makeflags-parsing.patch
-    ];
+  patches = [
+    ./4.x-no-persistent-install.patch
+    ./patch-source3__libads__kerberos_keytab.c.patch
+    ./4.x-no-persistent-install-dynconfig.patch
+    ./4.x-fix-makeflags-parsing.patch
+  ];
 
   nativeBuildInputs = optionals stdenv.isDarwin [ rpcgen fixDarwinDylibNames ];
 
-  buildInputs =
-    [ python pkgconfig perl libxslt docbook_xsl docbook_xml_dtd_42 /*
-      docbook_xml_dtd_45 */ readline popt iniparser jansson
-      libbsd libarchive zlib fam libiconv gettext libunwind krb5Full
-    ]
-    ++ optionals stdenv.isLinux [ libaio systemd ]
+  buildInputs = [
+    python pkgconfig perl libxslt docbook_xsl docbook_xml_dtd_42 /*
+    docbook_xml_dtd_45 */ readline popt iniparser jansson
+    libbsd libarchive zlib fam libiconv gettext libunwind krb5Full
+  ] ++ optionals stdenv.isLinux [ libaio systemd ]
     ++ optional enableLDAP openldap
     ++ optional (enablePrinting && stdenv.isLinux) cups
     ++ optional enableMDNS avahi
     ++ optionals enableDomainController [ gnutls gpgme lmdb ]
     ++ optional enableRegedit ncurses
     ++ optional (enableCephFS && stdenv.isLinux) libceph
-    ++ optional (enableGlusterFS && stdenv.isLinux) glusterfs
+    ++ optionals (enableGlusterFS && stdenv.isLinux) [ glusterfs libuuid ]
     ++ optional enableAcl acl
     ++ optional enablePam pam;
 
@@ -67,25 +66,24 @@ stdenv.mkDerivation rec {
        --replace "bld.SAMBA_BINARY('resolvconftest'" "True or bld.SAMBA_BINARY('resolvconftest'"
   '';
 
-  configureFlags =
-    [ "--with-static-modules=NONE"
-      "--with-shared-modules=ALL"
-      "--with-system-mitkrb5"
-      "--with-system-mitkdc" krb5Full
-      "--enable-fhs"
-      "--sysconfdir=/etc"
-      "--localstatedir=/var"
-      "--disable-rpath"
-    ]
-    ++ [(if enableDomainController
+  configureFlags = [
+    "--with-static-modules=NONE"
+    "--with-shared-modules=ALL"
+    "--with-system-mitkrb5"
+    "--with-system-mitkdc" krb5Full
+    "--enable-fhs"
+    "--sysconfdir=/etc"
+    "--localstatedir=/var"
+    "--disable-rpath"
+  ] ++ singleton (if enableDomainController
          then "--with-experimental-mit-ad-dc"
-         else "--without-ad-dc")]
+         else "--without-ad-dc")
     ++ optionals (!enableLDAP) [ "--without-ldap" "--without-ads" ]
     ++ optional (!enableAcl) "--without-acl-support"
     ++ optional (!enablePam) "--without-pam";
 
   preBuild = ''
-      export MAKEFLAGS="-j $NIX_BUILD_CORES"
+    export MAKEFLAGS="-j $NIX_BUILD_CORES"
   '';
 
   # Some libraries don't have /lib/samba in RPATH but need it.
@@ -105,7 +103,7 @@ stdenv.mkDerivation rec {
   '';
 
   meta = with stdenv.lib; {
-    homepage = https://www.samba.org/;
+    homepage = "https://www.samba.org";
     description = "The standard Windows interoperability suite of programs for Linux and Unix";
     license = licenses.gpl3;
     platforms = platforms.unix;

From c1fae7ccc89cc5c499118f4d3641aad284e36552 Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Fri, 13 Sep 2019 15:16:41 -0400
Subject: [PATCH 081/152] xmonad: Fix test

---
 nixos/tests/xmonad.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nixos/tests/xmonad.nix b/nixos/tests/xmonad.nix
index 4d3bc28cd349..79c15ccffecd 100644
--- a/nixos/tests/xmonad.nix
+++ b/nixos/tests/xmonad.nix
@@ -26,7 +26,7 @@ import ./make-test.nix ({ pkgs, ...} : {
     $machine->waitForFile("/home/alice/.Xauthority");
     $machine->succeed("xauth merge ~alice/.Xauthority");
     $machine->sendKeys("alt-ctrl-x");
-    $machine->waitForWindow(qr/machine.*alice/);
+    $machine->waitForWindow(qr/alice.*machine/);
     $machine->sleep(1);
     $machine->screenshot("terminal");
     $machine->waitUntilSucceeds("xmonad --restart");

From 02cab2d031f918fc2ddb475128e6ce64df1d213c Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@protonmail.ch>
Date: Thu, 12 Sep 2019 14:27:13 -0400
Subject: [PATCH 082/152] scribusUnstable: fix build

We use harfbuzzFull because that includes the icu build which
this depends on.

Fixes #68548
---
 pkgs/applications/office/scribus/unstable.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/office/scribus/unstable.nix b/pkgs/applications/office/scribus/unstable.nix
index 2cd441794a46..eef57179b3ea 100644
--- a/pkgs/applications/office/scribus/unstable.nix
+++ b/pkgs/applications/office/scribus/unstable.nix
@@ -1,6 +1,6 @@
 { stdenv, fetchurl, mkDerivation, pkgconfig, cmake, qtbase, cairo, pixman,
 boost, cups, fontconfig, freetype, hunspell, libjpeg, libtiff, libxml2, lcms2,
-podofo, poppler, poppler_data, python2, harfbuzz, qtimageformats, qttools }:
+podofo, poppler, poppler_data, python2, harfbuzz, qtimageformats, qttools, harfbuzzFull }:
 
 let
   pythonEnv = python2.withPackages(ps: [ps.tkinter ps.pillow]);
@@ -20,7 +20,7 @@ mkDerivation rec {
   buildInputs = [
     qtbase cairo pixman boost cups fontconfig
     freetype hunspell libjpeg libtiff libxml2 lcms2 podofo poppler
-    poppler_data pythonEnv harfbuzz qtimageformats qttools
+    poppler_data pythonEnv harfbuzz qtimageformats qttools harfbuzzFull
   ];
 
   meta = {

From b7f54d4ffac95e09f17bfa4a611091ebc023bf03 Mon Sep 17 00:00:00 2001
From: Silvan Mosberger <infinisil@icloud.com>
Date: Sat, 14 Sep 2019 00:56:19 +0200
Subject: [PATCH 083/152] radicale: Fix runtime

Needed pkg_resources module, which apparently comes from setuptools
according to https://stackoverflow.com/a/10538412/6605742
---
 pkgs/servers/radicale/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/servers/radicale/default.nix b/pkgs/servers/radicale/default.nix
index 90e27b2907e5..da55131773be 100644
--- a/pkgs/servers/radicale/default.nix
+++ b/pkgs/servers/radicale/default.nix
@@ -22,6 +22,7 @@ python3.pkgs.buildPythonApplication rec {
     vobject
     python-dateutil
     passlib
+    setuptools
   ];
 
   checkInputs = with python3.pkgs; [

From 700cc56a0e7e1daf7410420ac66978ae3225fbb2 Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Fri, 13 Sep 2019 18:32:29 -0500
Subject: [PATCH 084/152] doctl: 1.18.0 -> 1.31.2

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 pkgs/development/tools/doctl/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/development/tools/doctl/default.nix b/pkgs/development/tools/doctl/default.nix
index 670e2e1e3492..edad5d6276bc 100644
--- a/pkgs/development/tools/doctl/default.nix
+++ b/pkgs/development/tools/doctl/default.nix
@@ -4,8 +4,8 @@ buildGoPackage rec {
   pname = "doctl";
   version = "${major}.${minor}.${patch}";
   major = "1";
-  minor = "18";
-  patch = "0";
+  minor = "31";
+  patch = "2";
   goPackagePath = "github.com/digitalocean/doctl";
 
   excludedPackages = ''\(doctl-gen-doc\|install-doctl\|release-doctl\)'';
@@ -18,10 +18,10 @@ buildGoPackage rec {
    '';
 
   src = fetchFromGitHub {
-    owner = "digitalocean";
+    owner  = "digitalocean";
     repo   = "doctl";
     rev    = "v${version}";
-    sha256 = "1p43q1iyjj597gr47hn589fv7n26mny9niq7yb9hlmslkplsrb0a";
+    sha256 = "1q71kfjiav8xfw1bb3dziik1d0jr84hl83d3sx3cak0nd9nmakgs";
   };
 
   meta = {

From 5f46805ec696ac9dee1da4ecb36f4966c7fc17de Mon Sep 17 00:00:00 2001
From: Alexandre Esteves <alexandre.fmp.esteves@gmail.com>
Date: Sat, 14 Sep 2019 01:01:17 +0100
Subject: [PATCH 085/152] Fix typo

---
 doc/stdenv.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/doc/stdenv.xml b/doc/stdenv.xml
index 16003fb4acfb..f8c2aff97854 100644
--- a/doc/stdenv.xml
+++ b/doc/stdenv.xml
@@ -2411,7 +2411,7 @@ addEnvHooks "$hostOffset" myBashFunction
       <para>
        The Bintools Wrapper was only just recently split off from CC Wrapper,
        so the division of labor is still being worked out. For example, it
-       shouldn't care about about the C standard library, but just take a
+       shouldn't care about the C standard library, but just take a
        derivation with the dynamic loader (which happens to be the glibc on
        linux). Dependency finding however is a task both wrappers will continue
        to need to share, and probably the most important to understand. It is

From aaf0ccfa4da6d1413de9886ec26565d635beda44 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Tue, 3 Sep 2019 19:38:17 -0500
Subject: [PATCH 086/152] iwd: 0.19 -> 0.20

* don't use deprecated dbus directory
* alphabetize
* drop Mic92 from maintainers
  https://github.com/NixOS/nixpkgs/pull/68063#discussion_r323113385
* enableParallelBuilding

Co-authored-by: worldofpeace <worldofpeace@protonmail.ch>
---
 pkgs/os-specific/linux/iwd/default.nix | 38 ++++++++++++++++----------
 1 file changed, 24 insertions(+), 14 deletions(-)

diff --git a/pkgs/os-specific/linux/iwd/default.nix b/pkgs/os-specific/linux/iwd/default.nix
index a1bb98b82975..dcca5864b526 100644
--- a/pkgs/os-specific/linux/iwd/default.nix
+++ b/pkgs/os-specific/linux/iwd/default.nix
@@ -1,14 +1,22 @@
-{ stdenv, fetchgit, autoreconfHook, pkgconfig, ell, coreutils, readline, python3Packages }:
+{ stdenv
+, fetchgit
+, fetchpatch
+, autoreconfHook
+, pkgconfig
+, ell
+, coreutils
+, readline
+, python3Packages
+}:
 
 stdenv.mkDerivation rec {
   pname = "iwd";
-
-  version = "0.19";
+  version = "0.20";
 
   src = fetchgit {
     url = https://git.kernel.org/pub/scm/network/wireless/iwd.git;
     rev = version;
-    sha256 = "0848r06bnx5k6wlmy425hljc3f03x9xx0r83vdvf630jryc9llmz";
+    sha256 = "03ca47d4hn28vkf5fr6ck1gz5py4lm1pw3nw9s1ckw7cqxw961sf";
   };
 
   nativeBuildInputs = [
@@ -19,8 +27,8 @@ stdenv.mkDerivation rec {
 
   buildInputs = [
     ell
-    readline
     python3Packages.python
+    readline
   ];
 
   pythonPath = [
@@ -29,13 +37,13 @@ stdenv.mkDerivation rec {
   ];
 
   configureFlags = [
-    "--with-dbus-datadir=${placeholder "out"}/etc/"
-    "--with-dbus-busdir=${placeholder "out"}/share/dbus-1/system-services/"
-    "--with-systemd-unitdir=${placeholder "out"}/lib/systemd/system/"
-    "--with-systemd-modloaddir=${placeholder "out"}/etc/modules-load.d/" # maybe
-    "--localstatedir=/var/"
-    "--enable-wired"
     "--enable-external-ell"
+    "--enable-wired"
+    "--localstatedir=/var/"
+    "--with-dbus-busdir=${placeholder "out"}/share/dbus-1/system-services/"
+    "--with-dbus-datadir=${placeholder "out"}/share/"
+    "--with-systemd-modloaddir=${placeholder "out"}/etc/modules-load.d/" # maybe
+    "--with-systemd-unitdir=${placeholder "out"}/lib/systemd/system/"
   ];
 
   postUnpack = ''
@@ -55,16 +63,18 @@ stdenv.mkDerivation rec {
 
   postFixup = ''
     substituteInPlace $out/share/dbus-1/system-services/net.connman.ead.service \
-                      --replace /bin/false ${coreutils}/bin/false
+      --replace /bin/false ${coreutils}/bin/false
     substituteInPlace $out/share/dbus-1/system-services/net.connman.iwd.service \
-                      --replace /bin/false ${coreutils}/bin/false
+      --replace /bin/false ${coreutils}/bin/false
   '';
 
+  enableParallelBuilding = true;
+
   meta = with stdenv.lib; {
     homepage = https://git.kernel.org/pub/scm/network/wireless/iwd.git;
     description = "Wireless daemon for Linux";
     license = licenses.lgpl21;
     platforms = platforms.linux;
-    maintainers = [ maintainers.mic92 ];
+    maintainers = with maintainers; [ dtzWill ];
   };
 }

From 208fa6be8e92a7e7fb427a28e0afb92cf7af7c7c Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Thu, 15 Aug 2019 18:22:26 -0500
Subject: [PATCH 087/152] iwd: revert commit introducing attempt to create /var

Co-authored-by: worldofpeace <worldofpeace@protonmail.ch>
---
 pkgs/os-specific/linux/iwd/default.nix | 10 ++++++++++
 1 file changed, 10 insertions(+)

diff --git a/pkgs/os-specific/linux/iwd/default.nix b/pkgs/os-specific/linux/iwd/default.nix
index dcca5864b526..59d41412f55e 100644
--- a/pkgs/os-specific/linux/iwd/default.nix
+++ b/pkgs/os-specific/linux/iwd/default.nix
@@ -19,6 +19,16 @@ stdenv.mkDerivation rec {
     sha256 = "03ca47d4hn28vkf5fr6ck1gz5py4lm1pw3nw9s1ckw7cqxw961sf";
   };
 
+  patches = [
+    # Undo creating ReadWritePaths as instalation target.
+    (fetchpatch {
+      name = "revert-create-dirs-on-install.patch";
+      url = "https://git.kernel.org/pub/scm/network/wireless/iwd.git/patch/?id=5a96c11664eb553bc28a2142af382b190254edbb";
+      sha256 = "08gkz3ia1l5xsh3pbx4abimgf7m88wygfpfyg77yi6dwavjqm6cx";
+      revert = true;
+    })
+  ];
+
   nativeBuildInputs = [
     autoreconfHook
     pkgconfig

From 792f80d918db2409cef03f278a37638b4a251786 Mon Sep 17 00:00:00 2001
From: Aaron Andersen <aaron@fosslib.net>
Date: Fri, 13 Sep 2019 21:10:11 -0400
Subject: [PATCH 088/152] tome4: fix broken build

---
 pkgs/games/tome4/default.nix | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/pkgs/games/tome4/default.nix b/pkgs/games/tome4/default.nix
index c04920d7aa2c..c4d5dcb41e71 100644
--- a/pkgs/games/tome4/default.nix
+++ b/pkgs/games/tome4/default.nix
@@ -25,6 +25,11 @@ in stdenv.mkDerivation rec {
     sha256 = "0mc5dgh2x9nbili7gy6srjhb23ckalf08wqq2amyjr5rq392jvd7";
   };
 
+  prePatch = ''
+    # http://forums.te4.org/viewtopic.php?f=42&t=49478&view=next#p234354
+    sed -i 's|#include <GL/glext.h>||' src/tgl.h
+  '';
+
   nativeBuildInputs = [ makeWrapper unzip premake4 ];
 
   # tome4 vendors quite a few libraries so someone might want to look

From 4e6b7a51a051c1bbc2ac12ef1af4a72b6af4ef42 Mon Sep 17 00:00:00 2001
From: Aaron Andersen <aaron@fosslib.net>
Date: Fri, 13 Sep 2019 21:17:05 -0400
Subject: [PATCH 089/152] nut: fix broken build

---
 pkgs/applications/misc/nut/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/nut/default.nix b/pkgs/applications/misc/nut/default.nix
index 816918ca0638..ec5ee031a5be 100644
--- a/pkgs/applications/misc/nut/default.nix
+++ b/pkgs/applications/misc/nut/default.nix
@@ -1,5 +1,5 @@
 { stdenv, fetchurl, pkgconfig, neon, libusb, openssl, udev, avahi, freeipmi
-, libtool, makeWrapper }:
+, libtool, makeWrapper, nss }:
 
 stdenv.mkDerivation rec {
   name = "nut-2.7.4";
@@ -9,7 +9,7 @@ stdenv.mkDerivation rec {
     sha256 = "19r5dm07sfz495ckcgbfy0pasx0zy3faa0q7bih69lsjij8q43lq";
   };
 
-  buildInputs = [ neon libusb openssl udev avahi freeipmi libtool ];
+  buildInputs = [ neon libusb openssl udev avahi freeipmi libtool nss ];
 
   nativeBuildInputs = [ pkgconfig makeWrapper ];
 

From 27c8e8ec5c9859aa49bfe866a3a9b817cb2d0bf3 Mon Sep 17 00:00:00 2001
From: Jonathan Ringer <jonringer117@gmail.com>
Date: Fri, 13 Sep 2019 18:16:34 -0700
Subject: [PATCH 090/152] pythonPackages.uamq: 1.1.0 -> 1.2.2

---
 .../python-modules/uamqp/default.nix            | 17 ++++++++---------
 1 file changed, 8 insertions(+), 9 deletions(-)

diff --git a/pkgs/development/python-modules/uamqp/default.nix b/pkgs/development/python-modules/uamqp/default.nix
index ff0c61c5e077..fc6c2b777945 100644
--- a/pkgs/development/python-modules/uamqp/default.nix
+++ b/pkgs/development/python-modules/uamqp/default.nix
@@ -1,24 +1,21 @@
-{ CFNetwork
-, Security
-, buildPythonPackage
+{ lib, buildPythonPackage, fetchPypi, isPy3k
 , certifi
+, CFNetwork
 , cmake
 , enum34
-, fetchPypi
-, isPy3k
-, lib
 , openssl
-, stdenv
+, Security
 , six
+, stdenv
 }:
 
 buildPythonPackage rec {
   pname = "uamqp";
-  version = "1.1.0";
+  version = "1.2.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d3d4ff94bf290adb82fe8c19af709a21294bac9b27c821b9110165a34b922015";
+    sha256 = "0wmyw2l2pha5s6khih96lkfa90zyfy2mqsg8cx6vplmrmpx2s52i";
   };
 
   buildInputs = [
@@ -31,6 +28,8 @@ buildPythonPackage rec {
     CFNetwork Security
   ];
 
+  dontUseCmakeConfigure = true;
+
   nativeBuildInputs = [
     cmake
   ];

From e5aba9c0075c3a27e7abbf24eb3de63f00e46d79 Mon Sep 17 00:00:00 2001
From: Jonathan Ringer <jonringer117@gmail.com>
Date: Fri, 13 Sep 2019 18:25:45 -0700
Subject: [PATCH 091/152] pythonPackages.azure-servicebus: 0.50.0 -> 0.50.1

---
 pkgs/development/python-modules/azure-servicebus/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/azure-servicebus/default.nix b/pkgs/development/python-modules/azure-servicebus/default.nix
index e8683a68e295..84ebf617bae9 100644
--- a/pkgs/development/python-modules/azure-servicebus/default.nix
+++ b/pkgs/development/python-modules/azure-servicebus/default.nix
@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "azure-servicebus";
-  version = "0.50.0";
+  version = "0.50.1";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "c5864cfc69402e3e2897e61b3bd224ade28d9e33dad849e4bd6afad26a3d2786";
+    sha256 = "0i8ls5h2ny12h9gnqwyq13ysvxgdq7b1kxirj4n58dfy94a182gv";
   };
 
   buildInputs = [

From f99bdb2b615da434e0f2814a5924a2aa6a7a1f66 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Fri, 13 Sep 2019 11:11:53 -0500
Subject: [PATCH 092/152] networkmanager,modemmanager: fix service symlinks for
 systemd v243

Fixes problems such as:

systemd[1]: Failed to put bus name to hashmap: File exists
systemd[1]: dbus-org.freedesktop.nm-dispatcher.service: Two services allocated for the same bus name org.freedesktop.nm_dispatcher, refusing operation.

Problem is that systemd treats symlinks to files outside the service
path differently, causing our old workaround to look like two separate services.

These symlinks are intended to be a means for manually emulating
the behavior of the `Alias=` directive in these services.
Unfortunately even making these symlinks relative isn't enough,
since they don't make it to where it matters--
that only makes the links in /etc/static/systemd/system/*
relative, with systemd still being shown non-relative links
in /etc/systemd/system/*.

To fix this, drop all of this at the package level
and instead simply specify the aliases in the NixOS modules.

Also handle the same for modemmanager,
since the networkmanager NixOS module also handles that.
---
 nixos/modules/services/networking/networkmanager.nix | 5 +++++
 pkgs/tools/networking/modem-manager/default.nix      | 7 -------
 pkgs/tools/networking/network-manager/default.nix    | 5 -----
 3 files changed, 5 insertions(+), 12 deletions(-)

diff --git a/nixos/modules/services/networking/networkmanager.nix b/nixos/modules/services/networking/networkmanager.nix
index db4d0e328e2d..db047e6d0b89 100644
--- a/nixos/modules/services/networking/networkmanager.nix
+++ b/nixos/modules/services/networking/networkmanager.nix
@@ -468,12 +468,16 @@ in {
         mkdir -m 700 -p /etc/ipsec.d
         mkdir -m 755 -p ${stateDirs}
       '';
+
+      aliases = [ "dbus-org.freedesktop.NetworkManager.service" ];
     };
 
     systemd.services.NetworkManager-wait-online = {
       wantedBy = [ "network-online.target" ];
     };
 
+    systemd.services.ModemManager.aliases = [ "dbus-org.freedesktop.ModemManager1.service" ];
+
     systemd.services.nm-setup-hostsdirs = mkIf dynamicHostsEnabled {
       wantedBy = [ "NetworkManager.service" ];
       before = [ "NetworkManager.service" ];
@@ -495,6 +499,7 @@ in {
 
       # useful binaries for user-specified hooks
       path = [ pkgs.iproute pkgs.utillinux pkgs.coreutils ];
+      aliases = [ "dbus-org.freedesktop.nm-dispatcher.service" ];
     };
 
     # Turn off NixOS' network management when networking is managed entirely by NetworkManager
diff --git a/pkgs/tools/networking/modem-manager/default.nix b/pkgs/tools/networking/modem-manager/default.nix
index b2644d0c2a49..fedc8d4b71d7 100644
--- a/pkgs/tools/networking/modem-manager/default.nix
+++ b/pkgs/tools/networking/modem-manager/default.nix
@@ -32,13 +32,6 @@ stdenv.mkDerivation rec {
 
   doCheck = true;
 
-  postInstall = ''
-    # systemd in NixOS doesn't use `systemctl enable`, so we need to establish
-    # aliases ourselves.
-    ln -s $out/etc/systemd/system/ModemManager.service \
-      $out/etc/systemd/system/dbus-org.freedesktop.ModemManager1.service
-  '';
-
   meta = with stdenv.lib; {
     description = "WWAN modem manager, part of NetworkManager";
     homepage = https://www.freedesktop.org/wiki/Software/ModemManager/;
diff --git a/pkgs/tools/networking/network-manager/default.nix b/pkgs/tools/networking/network-manager/default.nix
index 5bc915caea65..490ebd0fa6bb 100644
--- a/pkgs/tools/networking/network-manager/default.nix
+++ b/pkgs/tools/networking/network-manager/default.nix
@@ -97,11 +97,6 @@ in stdenv.mkDerivation rec {
   '';
 
   postInstall = ''
-    # systemd in NixOS doesn't use `systemctl enable`, so we need to establish
-    # aliases ourselves.
-    ln -s $out/etc/systemd/system/NetworkManager-dispatcher.service $out/etc/systemd/system/dbus-org.freedesktop.nm-dispatcher.service
-    ln -s $out/etc/systemd/system/NetworkManager.service $out/etc/systemd/system/dbus-org.freedesktop.NetworkManager.service
-
     # Add the legacy service name from before #51382 to prevent NetworkManager
     # from not starting back up:
     # TODO: remove this once 19.10 is released

From 7ff42e439e2995467a8b5b4ee1739943f8e59b46 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Wed, 11 Sep 2019 15:12:22 -0500
Subject: [PATCH 093/152] sarasa-gothic: 0.8.0 -> 0.8.2

https://github.com/be5invis/Sarasa-Gothic/releases/tag/v0.8.2
---
 pkgs/data/fonts/sarasa-gothic/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/data/fonts/sarasa-gothic/default.nix b/pkgs/data/fonts/sarasa-gothic/default.nix
index 2d9fbfdae050..7e073bf56d34 100644
--- a/pkgs/data/fonts/sarasa-gothic/default.nix
+++ b/pkgs/data/fonts/sarasa-gothic/default.nix
@@ -1,12 +1,12 @@
 { lib, fetchurl, p7zip }:
 
 let
-  version = "0.8.0";
+  version = "0.8.2";
 in fetchurl {
   name = "sarasa-gothic-${version}";
 
   url = "https://github.com/be5invis/Sarasa-Gothic/releases/download/v${version}/sarasa-gothic-ttc-${version}.7z";
-  sha256 = "0zafvzrh4180hmz351f1rvs29n8mfxf0qv6mdl7psf1f066dizs6";
+  sha256 = "17xkpklb6spi10132lq658fwvrms3fs7ksb9j098z9vaqad1k51q";
 
   recursiveHash = true;
   downloadToTemp = true;

From 9a6327326749a2743914fcd7477e0252677e41c8 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Wed, 11 Sep 2019 11:47:16 -0500
Subject: [PATCH 094/152] txr: 224 -> 225

http://www.kylheku.com/cgit/txr/tree/RELNOTES?id=txr-225
---
 pkgs/tools/misc/txr/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/misc/txr/default.nix b/pkgs/tools/misc/txr/default.nix
index a71666b7acd5..c47fe77fb76b 100644
--- a/pkgs/tools/misc/txr/default.nix
+++ b/pkgs/tools/misc/txr/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "txr";
-  version = "224";
+  version = "225";
 
   src = fetchurl {
     url = "http://www.kylheku.com/cgit/txr/snapshot/${pname}-${version}.tar.bz2";
-    sha256 = "10xz140i4sam9r7r8rz5mz5jbwal7xvaimzrb7lmisqsvby2qcw7";
+    sha256 = "07vh0rmvjr2sir15l3ppp2pnp2d849dg17rzykkzqyk3d5rwfxyj";
   };
 
   nativeBuildInputs = [ bison flex ];

From ecdc1ecd9c8d502ad3ef9cfe8d48645319120bac Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Fri, 13 Sep 2019 22:00:00 -0500
Subject: [PATCH 095/152] chez: fix build on darwin

---
 pkgs/development/compilers/chez/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/compilers/chez/default.nix b/pkgs/development/compilers/chez/default.nix
index 12d68f0265c4..a0fc30c85868 100644
--- a/pkgs/development/compilers/chez/default.nix
+++ b/pkgs/development/compilers/chez/default.nix
@@ -20,7 +20,7 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
-  NIX_CFLAGS_COMPILE = "-Wno-error=format-truncation";
+  NIX_CFLAGS_COMPILE = stdenv.lib.optional stdenv.cc.isGNU "-Wno-error=format-truncation";
 
   /*
   ** We patch out a very annoying 'feature' in ./configure, which

From dc25f13c5afe31dbaf596ae5546a0f93df9a0de5 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Tue, 10 Sep 2019 21:25:41 -0500
Subject: [PATCH 096/152] krita: 4.2.5 -> 4.2.6, gz -> xz

https://krita.org/en/item/krita-4-2-6-released/
---
 pkgs/applications/graphics/krita/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/graphics/krita/default.nix b/pkgs/applications/graphics/krita/default.nix
index 83489e1a24c9..30f7739167ca 100644
--- a/pkgs/applications/graphics/krita/default.nix
+++ b/pkgs/applications/graphics/krita/default.nix
@@ -10,11 +10,11 @@
 
 mkDerivation rec {
   pname = "krita";
-  version = "4.2.5";
+  version = "4.2.6";
 
   src = fetchurl {
-    url = "https://download.kde.org/stable/${pname}/${version}/${pname}-${version}.tar.gz";
-    sha256 = "1f14r2mrqasl6nr3sss0xy2h8xlxd5wdcjcd64m9nz2gwlm39r7w";
+    url = "https://download.kde.org/stable/${pname}/${version}/${pname}-${version}.tar.xz";
+    sha256 = "0qdaw8xx3h91v8iw6nw2h276ka8hflaq4r4qwz5mqfd3h254jzym";
   };
 
   nativeBuildInputs = [ cmake extra-cmake-modules python3Packages.sip makeWrapper ];

From 9fbb606cd002345cdb8a15d27d802edd40f83a37 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Fri, 13 Sep 2019 22:05:38 -0500
Subject: [PATCH 097/152] agave: 10 -> 14

https://github.com/agarick/agave/releases/tag/v14
https://github.com/agarick/agave/releases/tag/v13
https://github.com/agarick/agave/releases/tag/v12
https://github.com/agarick/agave/releases/tag/v11
---
 pkgs/data/fonts/agave/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/data/fonts/agave/default.nix b/pkgs/data/fonts/agave/default.nix
index e9f4fbd48678..1fffbd9dcb16 100644
--- a/pkgs/data/fonts/agave/default.nix
+++ b/pkgs/data/fonts/agave/default.nix
@@ -2,18 +2,18 @@
 
 let
   pname = "agave";
-  version = "10";
+  version = "14";
 in fetchurl {
   name = "${pname}-${version}";
-  url = "https://github.com/agarick/agave/releases/download/v${version}/agave-r.ttf";
+  url = "https://github.com/agarick/agave/releases/download/v${version}/Agave-Regular.ttf";
 
   downloadToTemp = true;
   recursiveHash = true;
   postFetch = ''
-    install -D $downloadedFile $out/share/fonts/truetype/agave-r.ttf
+    install -D $downloadedFile $out/share/fonts/truetype/Agave-Regular.ttf
   '';
 
-  sha256 = "1mfj6a9sp00mjz7420yyrbbs5bqks3fz2slwgcppklxnz0890r9f";
+  sha256 = "14hr6cdn5xbfpszj4qyfqbwmjyrkmi83yl0g9j3y3jw561jwy27j";
 
   meta = with lib; {
     description = "truetype monospaced typeface designed for X environments";

From 15cafa9e1090bdbc31159fa5d30555005ac8182d Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Mon, 9 Sep 2019 16:59:21 -0500
Subject: [PATCH 098/152] todoman: 3.5.0 -> 3.6.0

https://github.com/pimutils/todoman/releases/tag/v3.6.0
---
 pkgs/applications/office/todoman/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/office/todoman/default.nix b/pkgs/applications/office/todoman/default.nix
index 450ee34262b9..7c5c8f724401 100644
--- a/pkgs/applications/office/todoman/default.nix
+++ b/pkgs/applications/office/todoman/default.nix
@@ -5,11 +5,11 @@ let
 in
 buildPythonApplication rec {
   pname = "todoman";
-  version = "3.5.0";
+  version = "3.6.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "051qjdpwif06x7qspnb4pfwdhb8nnmz99yqcp4kla5hv0n3jh0w9";
+    sha256 = "1c0jh9bi2xfjc7w4kka68mygl00zkp2qxhffnipmfvvykfjmlhk0";
   };
 
     LOCALE_ARCHIVE = stdenv.lib.optionalString stdenv.isLinux
@@ -19,7 +19,7 @@ buildPythonApplication rec {
 
   buildInputs = [ glibcLocales ];
   propagatedBuildInputs = with python3.pkgs;
-    [ atomicwrites click click-log configobj humanize icalendar parsedatetime
+    [ atomicwrites click click-log click-repl configobj humanize icalendar parsedatetime
       python-dateutil pyxdg tabulate urwid ];
 
   checkInputs = with python3.pkgs;

From 3b9995ca8e0d42f3d0f043962f0b354ee4d02739 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Mon, 9 Sep 2019 12:43:35 -0500
Subject: [PATCH 099/152] lollypop: 1.1.4.14 -> 1.1.4.16

https://gitlab.gnome.org/World/lollypop/-/tags/1.1.4.16
---
 pkgs/applications/audio/lollypop/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/audio/lollypop/default.nix b/pkgs/applications/audio/lollypop/default.nix
index e4d508b2a1f5..73d8d350f38c 100644
--- a/pkgs/applications/audio/lollypop/default.nix
+++ b/pkgs/applications/audio/lollypop/default.nix
@@ -20,7 +20,7 @@
 
 python3.pkgs.buildPythonApplication rec  {
   pname = "lollypop";
-  version = "1.1.4.14";
+  version = "1.1.4.16";
 
   format = "other";
   doCheck = false;
@@ -29,7 +29,7 @@ python3.pkgs.buildPythonApplication rec  {
     url = "https://gitlab.gnome.org/World/lollypop";
     rev = "refs/tags/${version}";
     fetchSubmodules = true;
-    sha256 = "004cwbnxss6vmdsc6i0y83h3xbc2bzc0ra4z99pkizkky2mz6swj";
+    sha256 = "1azfxc1vc1j4ph0zrfsgz2gac1vwmbj65j6wjlxx3nr8kia4mccl";
   };
 
   nativeBuildInputs = [

From a209776db94d52c6bb95f53652d4bec95c2e3139 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Mon, 9 Sep 2019 12:03:02 -0500
Subject: [PATCH 100/152] firefox-60-esr: 60.8.0esr -> 60.9.0esr

---
 pkgs/applications/networking/browsers/firefox/packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/browsers/firefox/packages.nix b/pkgs/applications/networking/browsers/firefox/packages.nix
index e1d4014c83bb..3e8cf4d66b92 100644
--- a/pkgs/applications/networking/browsers/firefox/packages.nix
+++ b/pkgs/applications/networking/browsers/firefox/packages.nix
@@ -70,11 +70,11 @@ rec {
 
   firefox-esr-60 = common rec {
     pname = "firefox-esr";
-    ffversion = "60.8.0esr";
+    ffversion = "60.9.0esr";
 
     src = fetchurl {
       url = "mirror://mozilla/firefox/releases/${ffversion}/source/firefox-${ffversion}.source.tar.xz";
-      sha512 = "0332b6049b97e488e55a3b9540baad3bd159e297084e9a625b8492497c73f86eb3e144219dabc5e9f2c2e4a27630d83d243c919cd4f86b7f59f47133ed3afc54";
+      sha512 = "4baea5c9c4eff257834bbaee6d7786f69f7e6bacd24ca13c2705226f4a0d88315ab38c650b2c5e9c76b698f2debc7cea1e5a99cb4dc24e03c48a24df5143a3cf";
     };
 
     patches = [

From 11fc56348ee4b5efc6f44d9f91a286ade4609371 Mon Sep 17 00:00:00 2001
From: Samuel Leathers <samuel.leathers@iohk.io>
Date: Fri, 13 Sep 2019 23:33:38 -0400
Subject: [PATCH 101/152] maintainer scripts: fix hydra-eval-failures script

---
 maintainers/scripts/hydra-eval-failures.py | 36 ++++++++++++++--------
 1 file changed, 24 insertions(+), 12 deletions(-)

diff --git a/maintainers/scripts/hydra-eval-failures.py b/maintainers/scripts/hydra-eval-failures.py
index 23669502e46d..6e7ec2dbc002 100755
--- a/maintainers/scripts/hydra-eval-failures.py
+++ b/maintainers/scripts/hydra-eval-failures.py
@@ -11,13 +11,15 @@ import click
 import requests
 from pyquery import PyQuery as pq
 
+def map_dict (f, d):
+    for k,v in d.items():
+        d[k] = f(v)
 
 maintainers_json = subprocess.check_output([
-    'nix-instantiate', '-E', 'import ./maintainers/maintainer-list.nix {}', '--eval', '--json'
+    'nix-instantiate', '-A', 'lib.maintainers', '--eval', '--strict', '--json'
 ])
 maintainers = json.loads(maintainers_json)
-MAINTAINERS = {v: k for k, v in maintainers.items()}
-
+MAINTAINERS = map_dict(lambda v: v.get('github', None), maintainers)
 
 def get_response_text(url):
     return pq(requests.get(url).text)  # IO
@@ -38,30 +40,39 @@ def get_maintainers(attr_name):
             '-A',
             '.'.join(nixname[1:]) + '.meta',
             EVAL_FILE[nixname[0]],
+            '--arg',
+            'nixpkgs',
+            './.',
             '--json'])
         meta = json.loads(meta_json)
-        if meta.get('maintainers'):
-            return [MAINTAINERS[name] for name in meta['maintainers'] if MAINTAINERS.get(name)]
+        return meta.get('maintainers', [])
     except:
        return []
 
+def filter_github_users(maintainers):
+    github_only = []
+    for i in maintainers:
+        if i.get('github'):
+            github_only.append(i)
+    return github_only
+
 def print_build(table_row):
     a = pq(table_row)('a')[1]
     print("- [ ] [{}]({})".format(a.text, a.get('href')), flush=True)
-    
-    maintainers = get_maintainers(a.text)
-    if maintainers:
-        print("  - maintainers: {}".format(", ".join(map(lambda u: '@' + u, maintainers))))
+
+    job_maintainers = filter_github_users(get_maintainers(a.text))
+    if job_maintainers:
+        print("  - maintainers: {}".format(" ".join(map(lambda u: '@' + u.get('github'), job_maintainers))))
     # TODO: print last three persons that touched this file
     # TODO: pinpoint the diff that broke this build, or maybe it's transient or maybe it never worked?
-    
+
     sys.stdout.flush()
 
 @click.command()
 @click.option(
     '--jobset',
-    default="nixos/release-17.09",
-    help='Hydra project like nixos/release-17.09')
+    default="nixos/release-19.09",
+    help='Hydra project like nixos/release-19.09')
 def cli(jobset):
     """
     Given a Hydra project, inspect latest evaluation
@@ -93,6 +104,7 @@ def cli(jobset):
         print_build(tr)
 
 
+
 if __name__ == "__main__":
     try:
         cli()

From 5ae1d36521395885206cc49275f47c3c17903955 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Mon, 9 Sep 2019 11:42:52 -0500
Subject: [PATCH 102/152] noice: 0.6 -> 0.8

---
 pkgs/applications/misc/noice/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/noice/default.nix b/pkgs/applications/misc/noice/default.nix
index db8139122bab..6cc5dc9066dc 100644
--- a/pkgs/applications/misc/noice/default.nix
+++ b/pkgs/applications/misc/noice/default.nix
@@ -4,12 +4,12 @@ with stdenv.lib;
 
 stdenv.mkDerivation rec {
   pname = "noice";
-  version = "0.6";
+  version = "0.8";
 
   src = fetchgit {
     url = "git://git.2f30.org/noice.git";
     rev = "refs/tags/v${version}";
-    sha256 = "03rwglcy47fh6rb630vws10m95bxpcfv47nxrlws2li2ljam8prw";
+    sha256 = "0975j4m93s9a21pazwdzn4gqhkngwq7q6ghp0q8a75r6c4fb7aar";
   };
 
   configFile = optionalString (conf!=null) (builtins.toFile "config.def.h" conf);

From 82c4218fe95c9dc34295cc0b09e3e08ff679b4d0 Mon Sep 17 00:00:00 2001
From: Robert Djubek <envy1988@gmail.com>
Date: Fri, 13 Sep 2019 18:16:51 +0000
Subject: [PATCH 103/152] ocrmypdf: 8.2.3 -> 9.0.3

Version bump and bug fix
Fixes runtime dependencies ( #67497 ) and the version bump fixed other issues
---
 pkgs/tools/text/ocrmypdf/default.nix | 11 +++++++----
 1 file changed, 7 insertions(+), 4 deletions(-)

diff --git a/pkgs/tools/text/ocrmypdf/default.nix b/pkgs/tools/text/ocrmypdf/default.nix
index 514f3f675399..820d98408fb6 100644
--- a/pkgs/tools/text/ocrmypdf/default.nix
+++ b/pkgs/tools/text/ocrmypdf/default.nix
@@ -28,14 +28,14 @@ let
 
 in buildPythonApplication rec {
   pname = "ocrmypdf";
-  version = "8.2.3";
+  version = "9.0.3";
   disabled = ! python3Packages.isPy3k;
 
   src = fetchFromGitHub {
     owner = "jbarlow83";
     repo = "OCRmyPDF";
     rev = "v${version}";
-    sha256 = "1ldlyhxkav34y9d7g2kx3d4p26c2b82vnwi0ywnfynb16sav36d5";
+    sha256 = "1qnjdcbwkxxqfahylzl0wj1gk51yi9m8akd4d1rrq37vg2vwdkjy";
   };
 
   nativeBuildInputs = with python3Packages; [
@@ -51,12 +51,14 @@ in buildPythonApplication rec {
     img2pdf
     pdfminer
     pikepdf
+    pillow
     reportlab
     ruffus
+    setuptools
+    tqdm
   ];
 
   checkInputs = with python3Packages; [
-    hocr-tools
     pypdf2
     pytest
     pytest-helpers-namespace
@@ -67,7 +69,6 @@ in buildPythonApplication rec {
     setuptools
   ] ++ runtimeDeps;
 
-
   postPatch = ''
     substituteInPlace src/ocrmypdf/leptonica.py \
       --replace "ffi.dlopen(find_library('lept'))" \
@@ -93,6 +94,8 @@ in buildPythonApplication rec {
     and not test_old_unpaper'
   '';
 
+  makeWrapperArgs = [ "--prefix PATH : ${stdenv.lib.makeBinPath [ ghostscript jbig2enc pngquant qpdf tesseract4 unpaper ]}" ];
+
   meta = with stdenv.lib; {
     homepage = "https://github.com/jbarlow83/OCRmyPDF";
     description = "Adds an OCR text layer to scanned PDF files, allowing them to be searched";

From b5b92e015ca4c13d008c435b3739a55a3ab66176 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Sun, 8 Sep 2019 22:14:01 -0500
Subject: [PATCH 104/152] samba: 4.10.6 -> 4.10.8 (security!)

https://www.samba.org/samba/history/samba-4.10.8.html
https://www.samba.org/samba/history/samba-4.10.7.html
---
 pkgs/servers/samba/4.x.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/samba/4.x.nix b/pkgs/servers/samba/4.x.nix
index 63ac8c53317e..044acbe17207 100644
--- a/pkgs/servers/samba/4.x.nix
+++ b/pkgs/servers/samba/4.x.nix
@@ -20,11 +20,11 @@ with lib;
 
 stdenv.mkDerivation rec {
   pname = "samba";
-  version = "4.10.6";
+  version = "4.10.8";
 
   src = fetchurl {
     url = "mirror://samba/pub/samba/stable/${pname}-${version}.tar.gz";
-    sha256 = "0hpgdqlyczj98pkh2ldglvvnkrb1q541r3qikdvxq0qjvd9fpywy";
+    sha256 = "1x0hlhb674fndfkmimjicnzs543n3i8465a5ifcmjwvzavxha7y4";
   };
 
   outputs = [ "out" "dev" "man" ];

From 3491d523b35f4b131ecc60f6881e24d30ddd8422 Mon Sep 17 00:00:00 2001
From: Samuel Leathers <samuel.leathers@iohk.io>
Date: Fri, 13 Sep 2019 23:51:56 -0400
Subject: [PATCH 105/152] pythonPackages.twisted: add setuptools dependency

* required for buildbot test to pass
---
 pkgs/development/python-modules/twisted/default.nix | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/twisted/default.nix b/pkgs/development/python-modules/twisted/default.nix
index 10b25460cefc..249ddb4be863 100644
--- a/pkgs/development/python-modules/twisted/default.nix
+++ b/pkgs/development/python-modules/twisted/default.nix
@@ -11,6 +11,7 @@
 , attrs
 , pyopenssl
 , service-identity
+, setuptools
 , idna
 }:
 buildPythonPackage rec {
@@ -23,7 +24,7 @@ buildPythonPackage rec {
     sha256 = "294be2c6bf84ae776df2fc98e7af7d6537e1c5e60a46d33c3ce2a197677da395";
   };
 
-  propagatedBuildInputs = [ zope_interface incremental automat constantly hyperlink pyhamcrest attrs ];
+  propagatedBuildInputs = [ zope_interface incremental automat constantly hyperlink pyhamcrest attrs setuptools ];
 
   passthru.extras.tls = [ pyopenssl service-identity idna ];
 

From f1df175f8dfbdb9c989287baf7b12cc21d1a8f5a Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Fri, 13 Sep 2019 22:54:15 -0500
Subject: [PATCH 106/152] inter: 3.7 -> 3.10

https://github.com/rsms/inter/releases/tag/v3.10
https://github.com/rsms/inter/releases/tag/v3.9
https://github.com/rsms/inter/releases/tag/v3.8
---
 pkgs/data/fonts/inter/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/data/fonts/inter/default.nix b/pkgs/data/fonts/inter/default.nix
index 589acbcee5cc..33e7283147ac 100644
--- a/pkgs/data/fonts/inter/default.nix
+++ b/pkgs/data/fonts/inter/default.nix
@@ -1,7 +1,7 @@
 { lib, fetchzip }:
 
 let
-  version = "3.7";
+  version = "3.10";
 in fetchzip {
   name = "inter-${version}";
 
@@ -12,7 +12,7 @@ in fetchzip {
     unzip -j $downloadedFile \*.otf -d $out/share/fonts/opentype
   '';
 
-  sha256 = "1ja1v3605vp09azpabgmk710kic85zxwi4kksmqj9z805fmxddp6";
+  sha256 = "029fjpgdml8qx2cqn4rnh2xm3z4cnh74jlzjb8pbfm2azsnvi6r1";
 
   meta = with lib; {
     homepage = https://rsms.me/inter/;

From 6654b52c8b5a885f748eb3541bd5b2defb8cd992 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Wed, 7 Aug 2019 08:39:27 -0500
Subject: [PATCH 107/152] networkmanager-openconnect: 1.2.4 -> 1.2.6

---
 .../network-manager/openconnect/default.nix           | 11 ++++++-----
 1 file changed, 6 insertions(+), 5 deletions(-)

diff --git a/pkgs/tools/networking/network-manager/openconnect/default.nix b/pkgs/tools/networking/network-manager/openconnect/default.nix
index 1fb50686d0d0..4236c9e18184 100644
--- a/pkgs/tools/networking/network-manager/openconnect/default.nix
+++ b/pkgs/tools/networking/network-manager/openconnect/default.nix
@@ -1,15 +1,15 @@
-{ stdenv, fetchurl, substituteAll, openconnect, intltool, pkgconfig, networkmanager, libsecret
+{ stdenv, fetchurl, substituteAll, openconnect, intltool, pkgconfig, autoreconfHook, networkmanager, gcr, libsecret, file
 , gtk3, withGnome ? true, gnome3, kmod }:
 
 let
   pname   = "NetworkManager-openconnect";
-  version = "1.2.4";
+  version = "1.2.6";
 in stdenv.mkDerivation {
   name    = "${pname}${if withGnome then "-gnome" else ""}-${version}";
 
   src = fetchurl {
     url    = "mirror://gnome/sources/${pname}/${stdenv.lib.versions.majorMinor version}/${pname}-${version}.tar.xz";
-    sha256 = "15j98wwspv6mcmy91w30as5qc1bzsnhlk060xhjy4qrvd37y0xx1";
+    sha256 = "0nlp290nkawc4wqm978n4vhzg3xdqi8kpjjx19l855vab41rh44m";
   };
 
   patches = [
@@ -20,13 +20,14 @@ in stdenv.mkDerivation {
   ];
 
   buildInputs = [ openconnect networkmanager ]
-    ++ stdenv.lib.optionals withGnome [ gtk3 libsecret ];
+    ++ stdenv.lib.optionals withGnome [ gtk3 gcr libsecret ];
 
-  nativeBuildInputs = [ intltool pkgconfig ];
+  nativeBuildInputs = [ intltool pkgconfig file ];
 
   configureFlags = [
     "--with-gnome=${if withGnome then "yes" else "no"}"
     "--enable-absolute-paths"
+    "--without-libnm-glib"
   ];
 
   passthru = {

From 5a5a87cd002ab6875789f48a2ee697bc3b237f95 Mon Sep 17 00:00:00 2001
From: Vincent Laporte <Vincent.Laporte@gmail.com>
Date: Fri, 6 Sep 2019 16:01:51 +0000
Subject: [PATCH 108/152] ocamlPackages.mtime: disable jsoo support for OCaml <
 4.03

---
 pkgs/development/ocaml-modules/mtime/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/ocaml-modules/mtime/default.nix b/pkgs/development/ocaml-modules/mtime/default.nix
index f4e3586b43c1..f86909cc10b5 100644
--- a/pkgs/development/ocaml-modules/mtime/default.nix
+++ b/pkgs/development/ocaml-modules/mtime/default.nix
@@ -1,5 +1,5 @@
 { stdenv, lib, fetchurl, ocaml, findlib, ocamlbuild, topkg, js_of_ocaml
-, jsooSupport ? true
+, jsooSupport ? lib.versionAtLeast ocaml.version "4.03"
 }:
 
 with lib;

From 912f03d0d45d5bc9321733496e7d3b9322840938 Mon Sep 17 00:00:00 2001
From: Vincent Laporte <Vincent.Laporte@gmail.com>
Date: Fri, 6 Sep 2019 16:01:55 +0000
Subject: [PATCH 109/152] =?UTF-8?q?ocamlPackages.xtmpl:=20fix=20for=20jsoo?=
 =?UTF-8?q?=20=E2=89=A5=203.4.0?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 .../ocaml-modules/xtmpl/default.nix           |  2 ++
 .../ocaml-modules/xtmpl/jsoo.patch            | 26 +++++++++++++++++++
 2 files changed, 28 insertions(+)
 create mode 100644 pkgs/development/ocaml-modules/xtmpl/jsoo.patch

diff --git a/pkgs/development/ocaml-modules/xtmpl/default.nix b/pkgs/development/ocaml-modules/xtmpl/default.nix
index 4c5d1edcb09f..2c4cf4928db9 100644
--- a/pkgs/development/ocaml-modules/xtmpl/default.nix
+++ b/pkgs/development/ocaml-modules/xtmpl/default.nix
@@ -15,6 +15,8 @@ stdenv.mkDerivation rec {
     sha256 = "1hq6y4rhz958q40145k4av8hx8jyvspg78xf741samd7vc3jd221";
   };
 
+  patches = [ ./jsoo.patch ];
+
   buildInputs = [ ocaml findlib ppx_tools js_of_ocaml js_of_ocaml-ppx ];
   propagatedBuildInputs = [ iri re ];
 
diff --git a/pkgs/development/ocaml-modules/xtmpl/jsoo.patch b/pkgs/development/ocaml-modules/xtmpl/jsoo.patch
new file mode 100644
index 000000000000..7546dbca924a
--- /dev/null
+++ b/pkgs/development/ocaml-modules/xtmpl/jsoo.patch
@@ -0,0 +1,26 @@
+diff --git a/xtmpl_js.ml b/xtmpl_js.ml
+index e0d3894..991d1b3 100644
+--- a/xtmpl_js.ml
++++ b/xtmpl_js.ml
+@@ -25,6 +25,8 @@
+ 
+ (** *)
+ 
++open Js_of_ocaml
++
+ let log s = Firebug.console##log (Js.string s);;
+ 
+ module X = Xtmpl_rewrite
+diff --git a/xtmpl_js.mli b/xtmpl_js.mli
+index d709896..5ed471c 100644
+--- a/xtmpl_js.mli
++++ b/xtmpl_js.mli
+@@ -25,6 +25,8 @@
+ 
+ (** Convenient functions to use in JS code *)
+ 
++open Js_of_ocaml
++
+ (** Create a new tree of DOM nodes from a given XML tree.
+   Errors are logged to the firebug console.
+   @param doc Default is [Dom_html.document].

From 5fed98e8626d937bb9caf6a8f23f967d69d3372a Mon Sep 17 00:00:00 2001
From: Vincent Laporte <Vincent.Laporte@gmail.com>
Date: Fri, 6 Sep 2019 16:02:00 +0000
Subject: [PATCH 110/152] ocamlPackages.js_of_ocaml*: 3.3.0 -> 3.4.0

Ensures compatibility with OCaml 4.08
---
 .../tools/ocaml/js_of_ocaml/compiler.nix      | 23 ++++++-------------
 1 file changed, 7 insertions(+), 16 deletions(-)

diff --git a/pkgs/development/tools/ocaml/js_of_ocaml/compiler.nix b/pkgs/development/tools/ocaml/js_of_ocaml/compiler.nix
index c15268923123..c449c0f90024 100644
--- a/pkgs/development/tools/ocaml/js_of_ocaml/compiler.nix
+++ b/pkgs/development/tools/ocaml/js_of_ocaml/compiler.nix
@@ -1,35 +1,26 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune
+{ lib, fetchFromGitHub, buildDunePackage
 , cmdliner, cppo, yojson
 }:
 
-if !stdenv.lib.versionAtLeast ocaml.version "4.02"
-then throw "js_of_ocaml-compiler is not available for OCaml ${ocaml.version}"
-else
-
-stdenv.mkDerivation rec {
+buildDunePackage rec {
 	pname = "js_of_ocaml-compiler";
-	version = "3.3.0";
+	version = "3.4.0";
 
 	src = fetchFromGitHub {
 		owner = "ocsigen";
 		repo = "js_of_ocaml";
 		rev = version;
-		sha256 = "0bg8x2s3f24c8ia2g293ikd5yg0yjw3hkdgdql59c8k2amqin8f8";
+		sha256 = "0c537say0f3197zn8d83nrihabrxyn28xc6d7c9c3l0vvrv6qvfj";
 	};
 
-	buildInputs = [ ocaml findlib dune cmdliner cppo ];
+	buildInputs = [ cmdliner cppo ];
 
 	propagatedBuildInputs = [ yojson ];
 
-	buildPhase = "dune build -p js_of_ocaml-compiler";
-
-	inherit (dune) installPhase;
-
 	meta = {
 		description = "Compiler from OCaml bytecode to Javascript";
-		license = stdenv.lib.licenses.gpl2;
-		maintainers = [ stdenv.lib.maintainers.vbgl ];
+		license = lib.licenses.gpl2;
+		maintainers = [ lib.maintainers.vbgl ];
 		inherit (src.meta) homepage;
-		inherit (ocaml.meta) platforms;
 	};
 }

From 80e0666515c32c8f3b116b96f3f1adb921842e33 Mon Sep 17 00:00:00 2001
From: taku0 <mxxouy6x3m_github@tatapa.org>
Date: Sat, 14 Sep 2019 18:26:15 +0900
Subject: [PATCH 111/152] thunderbird-bin: 68.0 -> 68.1.0

---
 .../thunderbird-bin/release_sources.nix       | 490 +++++++++---------
 1 file changed, 245 insertions(+), 245 deletions(-)

diff --git a/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix b/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix
index d8f5e58d9fe5..2de09fc73f43 100644
--- a/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix
+++ b/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix
@@ -1,615 +1,615 @@
 {
-  version = "68.0";
+  version = "68.1.0";
   sources = [
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/ar/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/ar/thunderbird-68.1.0.tar.bz2";
       locale = "ar";
       arch = "linux-x86_64";
-      sha512 = "4fad3c7c4099f70253bfee450bcefe458bec61430720fcadde1fe8a1cbb2e62a18d9c55943f850c57f8d788c973774e24590823086cfacbbb2ccd8a99ce4faae";
+      sha512 = "b9bb22bdbe013358c03e804e3c51ad387dca503b9e0074db70494eb3f331d72bd8679db929972e75b39f2464d384753bcab9947d1a843a69167d7b3706952c35";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/ast/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/ast/thunderbird-68.1.0.tar.bz2";
       locale = "ast";
       arch = "linux-x86_64";
-      sha512 = "aac850773381d7fdb4d50fafe670449301f073f7388f92a1ca38d9b7256ffcd244b63e9fc0ff2f8ef5ccd853b97016b7e05eb751be1bdc8df9623481f15d55e6";
+      sha512 = "e00382241343bbd8a86e31dfcf5bbb060b46e5db6211cfa54c7192361353e2c4fe3d0ad3f4e0319ec1a0dc1f4590b7bc0271e5658bc468986d8e27a64d9924da";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/be/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/be/thunderbird-68.1.0.tar.bz2";
       locale = "be";
       arch = "linux-x86_64";
-      sha512 = "6521d818984bbfba195e847735c1228ff637d3079cff1f5a461ac20a079d325adfc1d7b2eca54f63e584a5cbd2007cef42a625597276a1810158931335f09cd9";
+      sha512 = "f043c8aa5dac0d5e2f9da628d6659f654cc39726677424e4b5e5005e97bf202575f569ebdee346d37cc8d4d59da188e6cfe1bd6bf7df1acafe26b489242b4a9f";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/bg/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/bg/thunderbird-68.1.0.tar.bz2";
       locale = "bg";
       arch = "linux-x86_64";
-      sha512 = "a0a738b6877225a5b98691d53a8f4a4bf575472a0d5feb8b77a67cd1fc9951772f1ab507b7ba460c0b62b87ab476c5c94130cbe7275692e3a99e5d2ef0bd89bd";
+      sha512 = "61fcf864145fb4fd4a05bff47bd23a7be8444f9d067eec246399c3a7ce48db8744ba4a9cb42e28a215a5bb1b336a57c51d1a32e6564f42c8b9fd4dba5f629d9f";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/br/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/br/thunderbird-68.1.0.tar.bz2";
       locale = "br";
       arch = "linux-x86_64";
-      sha512 = "58d21d9e55abed644eb16ba98a5fb3277e0a31b935d279b09745262952895c2c2aed31817e6157410137ff82fc5d242b64268f646c3b7b691c55c5f3ea36e0e6";
+      sha512 = "1cdc9b2a8ee82bb087a51ac013644ff3da5f1e161fca23fb24feae8076cef6c5aff5316f83a8ecfa4f08c3a8642501a333d3ef95b46b8f899ce78b79d027af4c";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/ca/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/ca/thunderbird-68.1.0.tar.bz2";
       locale = "ca";
       arch = "linux-x86_64";
-      sha512 = "cd401259f2cc4ec71ff9d936a1f2f64a064afafed2e305bb359f79eddf1159cd6a7c84ce54cde6be94f6acd295dbedf54017d9f4592ee3637eea00496c7cfbf1";
+      sha512 = "1b73ca87f3067ec2a84990c7c58060b11286dd653f4b8b4c18a44f5540ea195d25f995539de39b6e1de6cbbe54c890bf30f6d88157e000e30c69f4d32a4ae8f0";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/cak/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/cak/thunderbird-68.1.0.tar.bz2";
       locale = "cak";
       arch = "linux-x86_64";
-      sha512 = "45ea4af30ff93500d1671c6a0eeda993692b7204a7504a91ad30bfd5155add5af902205240fd62f80abe339224e686473f2d13f466ba96269347207ed3f628b5";
+      sha512 = "1b2ec85786a842c7554f52b1ff72c4e5611a76bca94c4b8e9a79604d6b85d7f2deba906bbeca355dfd0c5a6c241d9bd397f4e0dfebd802cdb0c35162a02fd879";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/cs/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/cs/thunderbird-68.1.0.tar.bz2";
       locale = "cs";
       arch = "linux-x86_64";
-      sha512 = "9f81f92a3b1710d006cda79f1b92923c1ea637a24654bd622af9be1f53a0024c5daa77619443514c9e607cb62f96403f5b7f426b3692227c0b56d1b14f51ca97";
+      sha512 = "69df6542c5037815d3a80be764eaa809dd351f75417e4362a258df5e17e36aef6d8f8653429f4218f196ff096252e0304c2cca1cccbf8693d119bc05f1072067";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/cy/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/cy/thunderbird-68.1.0.tar.bz2";
       locale = "cy";
       arch = "linux-x86_64";
-      sha512 = "c90467a78bc82667d974b1e94227b7d4185878654188967d97c11e419ec7a03e4e5e3636466a0b6d35beaa98b717a26341e3a652c3b21083ad8ad0b23f063ed1";
+      sha512 = "5dc63d2746475f0045f7749e45bbc3f755b187521b0ca877ffab9386bb1bbe9b4fd66f9cc6bdac516ba591e71d71f02a75b5c965a610a3efbee3b59815d8deda";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/da/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/da/thunderbird-68.1.0.tar.bz2";
       locale = "da";
       arch = "linux-x86_64";
-      sha512 = "f49bd5689d2a4dd311b22a23da9f26559685f1c4663eb1e482b45b79544ab4401a17701f33b6ad083e7a8983185fcb16fca4c8026138f24be495c6cbb6401488";
+      sha512 = "89427a2b66dbd71cdfbb299a14ce7ed61ab4836e473854ea8b2ec522de64870f8886f6ae86428c9b1c86733aaa4ac7c732a708fccdd70d3e112d2f651c0dc762";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/de/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/de/thunderbird-68.1.0.tar.bz2";
       locale = "de";
       arch = "linux-x86_64";
-      sha512 = "579d979cfa0bbe50fd0bbf0d15b38d90579bc065b488a2e9d4e3f18f505e71c50225d92185559578146097110760ed3807e1aefad4862d99e247447478d6bc42";
+      sha512 = "34130ec994f6ee6a407313ccc61d43b0375046f59f75d4fb619776d5c880993802c16a3b8ec28dc7053b4ae89f91f1c2046da7d884d150aa7c3b65edd1650b21";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/dsb/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/dsb/thunderbird-68.1.0.tar.bz2";
       locale = "dsb";
       arch = "linux-x86_64";
-      sha512 = "8d16bf47d368a670cadb6a2655933d5b49a796272f7dafd948cac95a2ae541561a38fa418cd4ed0c4aa79ef63a441ee769eeb2a071734abf2cc1ba243d4f3ba5";
+      sha512 = "0b9c02a1e31f8f3120fb9ed520c53505dc247440ba2e189cbc58569be5ce6e0c33de220ebda17754338aa680cf5c8aac3ad7f5da14e0cbefc29f32db2446618a";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/el/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/el/thunderbird-68.1.0.tar.bz2";
       locale = "el";
       arch = "linux-x86_64";
-      sha512 = "579b9114af9fda86e79e6812946da858945e2034ed2f00e4244724ecdd680b7db5601a4d573b530dc15207caac9245f6883343684eb43f3ae2abb64853c0b54f";
+      sha512 = "1d8e2efc2c9a7375a2ce0f2137165756800a680209d18612420581963f13774fc7780ac0ccda24a485996531d1e82e027b42a671f1c8fce5e8ccf0887f72ac6f";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/en-GB/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/en-GB/thunderbird-68.1.0.tar.bz2";
       locale = "en-GB";
       arch = "linux-x86_64";
-      sha512 = "f7caed8c3b49714e4449ef971ed1a21e40f28625c84e9342f63e5f73743689ee2c0e9ed4845f6667bd22732c62bd707db425f22a5c074dff8622cc4536ba9c29";
+      sha512 = "79684a833afe5d1025088d6f91e023c81832e9df83751926c5d9bc05fecb7f53d6efd096f55d65d45fa07309497cf5bed2e3b00cc4a80cc1e4ed2a0fe44d02a8";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/en-US/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/en-US/thunderbird-68.1.0.tar.bz2";
       locale = "en-US";
       arch = "linux-x86_64";
-      sha512 = "257528761f0eca38528ded4b31329886093418f562aa2fac73b3a5bedda51fe80b34758c10afae1735cf37b37a86413dcf08642aecb1e8bea1fb6b0b94ade5c7";
+      sha512 = "7a29cf0a238e44a2051b53e5476bc8f622dffd088251b66d951ad6874fba5fba180f440c80c7d5ae154c688d3e29fcc6c889f0031d81a018b7fd1dfd53f112a5";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/es-AR/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/es-AR/thunderbird-68.1.0.tar.bz2";
       locale = "es-AR";
       arch = "linux-x86_64";
-      sha512 = "70a10e329b1031a2fd2ffb2b60459f0238ff3f5e5d80533f4be6cb22ae77692ec079ca3e146bd9a59edd09c266cec92d922a18ba45f8626a4bd44e290d3c0927";
+      sha512 = "d9d62f94af40ba69240b792b3ef2d93efef20b01b4289e992f7d1192147029574f86fa21aed5ad54489d1e5ec1f3b80cd9601e71e2ba9c903582ccd7aed278a8";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/es-ES/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/es-ES/thunderbird-68.1.0.tar.bz2";
       locale = "es-ES";
       arch = "linux-x86_64";
-      sha512 = "a03098ad7d83b86cd316c56b69589370fb8bad041b93f90f61514b04e3d0e78385f779ed715c6e22e45597d1bf03676046cbc1eae7896bb2a309af3683c8bd1e";
+      sha512 = "d720320494b2c8431004e0d1ac24ff8fef83bc0977f44653d0fdab99fbc9a1aee6d5aecd7cbf6002e3746d04156f47aeb57367f2b30f4690efba36c3297fbeb0";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/et/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/et/thunderbird-68.1.0.tar.bz2";
       locale = "et";
       arch = "linux-x86_64";
-      sha512 = "44efeaf030580dd7b55770627678808e34d689e85191852c2e5fcb223a0fdd0e5386f21f03524d0983aeded7f8ed99382ff2c372c8c5a1fdfe218bd5b10ccd80";
+      sha512 = "8d9ba13604fab4eb9a3dec8894b04d52f9677d5f82695512680ff03740a66e96786f69476071741c8086a09070fd03786e8fae7f94bb3bec9075331fe4dc144b";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/eu/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/eu/thunderbird-68.1.0.tar.bz2";
       locale = "eu";
       arch = "linux-x86_64";
-      sha512 = "c670be5932d7e8bea28cffda7c119cfdfd5823f76b2c97251ec23ec16e420a8b7feb5f2251d89750b956d3bf3baff5d17393c05d8c265d0a98cc3faea8f85735";
+      sha512 = "e40110a94b3d7fb42707287dc695ea09b082fa3262d05b39a0c09002c32722630711f1b0131441c919b23130ed133338239060726cfc9d6c0b49822558081313";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/fi/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/fi/thunderbird-68.1.0.tar.bz2";
       locale = "fi";
       arch = "linux-x86_64";
-      sha512 = "36aa0b47e9b5d91fbc812a3d63503924a8ca227d7b7084c1159419092b17da9c1b6e89fa046c636dbcff7776f9a1d8465e660b47f1753505f0d2eb85da9c3a7a";
+      sha512 = "d8778ddba26f544a4721b9118ce5726b04fdf09758272b35ca16c14aea61d0b8271888344e742feb4d4e758182e97b01758acd53ad622a66117e3eb0d4a6d336";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/fr/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/fr/thunderbird-68.1.0.tar.bz2";
       locale = "fr";
       arch = "linux-x86_64";
-      sha512 = "b1e7d345d3dd38725227b5e09c4f3cfcf29ed3a98b0580fbf6ae1ecab4414d09e307423495b75769a8d2ee3ab4700cd6eba3d95ce05612e1d8290d3f5a3ba988";
+      sha512 = "2cd546d40bedf09b58703b0b11a5c9349d702540ae714942e0152a19cbecee51f37c7e217fadfc719ecfebf914f9ffad6b3070bb6471d395e8f5ff8ada754551";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/fy-NL/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/fy-NL/thunderbird-68.1.0.tar.bz2";
       locale = "fy-NL";
       arch = "linux-x86_64";
-      sha512 = "4065a083f49006dacf64f084c1bf26c4c1b8d53bca7eba7a56d66bb035eaae2c4528687c5c1e2213f92adbba17ff92eb54f897d3b0ef6d27b8effbee66ca555b";
+      sha512 = "03f52224f145917f64e8962b68bcf3810543b5bf0508dca7965c5a385c4f87bc7d236dac217594fdd2a10afe31da8aadc674eaf7b226e189b598011a8b9e223a";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-x86_64/ga-IE/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-x86_64/ga-IE/thunderbird-68.1.0.tar.bz2";
       locale = "ga-IE";
       arch = "linux-x86_64";
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     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-i686/pl/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-i686/pl/thunderbird-68.1.0.tar.bz2";
       locale = "pl";
       arch = "linux-i686";
-      sha512 = "f232e4b6cfcea81ed70e56e9812b8e0783205f49b846d29338ad09457db9a18e4fbb35738bf5e9abce42855c13c1839605aa343cb7d33d0110b68d634183e697";
+      sha512 = "c6ba1f98ebc44af63d8cd8052fd306d3a8920c33eb5b3be563c0fe203d5d07806bc5db7ff88847c3ee2d82c62d0811a086fa91e8253eec3a3977091569f40a20";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-i686/pt-BR/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-i686/pt-BR/thunderbird-68.1.0.tar.bz2";
       locale = "pt-BR";
       arch = "linux-i686";
-      sha512 = "2527ec08fc23d01712574e3c8419273ac82111c5f2b4b6040cd8f3292aeadb36021029b01bc319d8ca52177db39f1a446acd5537a6e8f42800eb22c3e2d7cb30";
+      sha512 = "cbd4c0f1b14cb04b98ef6f2e4ce53d655b58ae9a11047eeb1959ac1c4ef4370507194dd1149372fd1dad4ceedf91c39f3bde4fdf07b5d925f27dc8eb5041be67";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-i686/pt-PT/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-i686/pt-PT/thunderbird-68.1.0.tar.bz2";
       locale = "pt-PT";
       arch = "linux-i686";
-      sha512 = "c91d9d0becade1508a3212693f5fcdeb917fe5df5d63b54de125b76786dc3787a7f5f220eb48add1dd1eee95f7eb120b1c1dc85dc0bd91688c883be9219f3d7d";
+      sha512 = "ec08c628708a7bbcb00df2122e5fc463e1b0e1c031e9130369ddfee12db3cfe9219f7939756fc47abab8514c6cea642bb653ee420818ad625a33caada7005993";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-i686/rm/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-i686/rm/thunderbird-68.1.0.tar.bz2";
       locale = "rm";
       arch = "linux-i686";
-      sha512 = "45a4f608eb5e64f24ee385328a3a568aa2ad3284169019423c8b414790779cd079c2d73b290716f18227210ab5eff50625bd6688498bc027228b8fff51fda5b6";
+      sha512 = "4520dfb1529220e40cf2e1aca44cbc2af750fcceee3639d7ef334e9488034b18bc6e73b5b7a37204346da53a44da099f4f7f65d5b3dbdeac6d6934918c02cca3";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-i686/ro/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-i686/ro/thunderbird-68.1.0.tar.bz2";
       locale = "ro";
       arch = "linux-i686";
-      sha512 = "e344d838e2f79dd8ff79cf2e7ff2a1d8f6c7e64f29cf870d8a6fad9b3dee31de6c0a80d3007dd498dffb816c00dc8429150bc6b49a5b6eb10b633a4e942ca725";
+      sha512 = "49e54dd1cca8038ab6c34e9980b6b36117aa157b6555ba440f0d7c8c4d909253989b9a50d25c7c18529136fa26d0ff94474d17e43156afba171948c9c05e16a6";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-i686/ru/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-i686/ru/thunderbird-68.1.0.tar.bz2";
       locale = "ru";
       arch = "linux-i686";
-      sha512 = "8dbfd4f8969703623388a55e790b722933f2c1faf702ff5c7fdfe3cdab8f62fc4ea69f9303edf94a41a71be1b8c5a2ddfa5509d4c8abe260c91b7075349afe64";
+      sha512 = "6d297592bcf0c9b97c40f1053a95385e6c2510aa0ddfafd25085bc6a954fb5460f59f18f65477d8c93af829cd2a053b389b5dcec35a7ac7766d72c29064e5687";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-i686/si/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-i686/si/thunderbird-68.1.0.tar.bz2";
       locale = "si";
       arch = "linux-i686";
-      sha512 = "f1808e9648caa00afab0609dac1cb564dbf6e5bef75446071997cc9913da8470e54cb254282fc6e8b839e88b003ef18426609a97cd1affb93659fcb519913a5c";
+      sha512 = "f602557748517324943b5ff276f4efdeca1c5083662bc9f0b0bdba8c10510cee834b3883870a98d51d406f58e338a09d0589b3bc0891bfbd88b895cca02fd360";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-i686/sk/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-i686/sk/thunderbird-68.1.0.tar.bz2";
       locale = "sk";
       arch = "linux-i686";
-      sha512 = "7d5b480a44dae0d2f5348261ecad04348ebb7943a757fe83c0fb154da251b423ba21840c5d1fbf8d7979dd30c2d5e7b18e90d0ad033a1e96d6f6587407a24cc9";
+      sha512 = "7b6980d2b5131bd9a43a29efa2f1e97c60e15410a63224d839548d777fd8b4c4d65ccfc7756227cf900f7420b12231c3d48f062133cb6f21bbdcdcdb179f2e47";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-i686/sl/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-i686/sl/thunderbird-68.1.0.tar.bz2";
       locale = "sl";
       arch = "linux-i686";
-      sha512 = "f76e1f01b8da8a2ba344dd3bedfa4301df03fabf9848fa189d522995cd48d81f8d00f11e01722868acb1993d4e79977122e04e3d208629b2e398c715777194e1";
+      sha512 = "ecc38fb4fde66b7b213b1cfeb8ab170b3e685d0a28c7e071e19a85509ec74e79fb6eb61104c47f0eef1a77e1e1a52b292469a364747eeccc701c522452c58351";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-i686/sq/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-i686/sq/thunderbird-68.1.0.tar.bz2";
       locale = "sq";
       arch = "linux-i686";
-      sha512 = "cff32ee84324724dea5612e5b48b22adc63d8b9428c5937f84c94da83bcf5f2aadda6ab81c5f9bced6d693689bc38bf15c764d4ab4809cacec3bb54cd82745f7";
+      sha512 = "3ff668c6ed28bdb2f3d388ab8ecb1bf3b2b38bb29046b8559f7b9f9c6fa32db226c4620f472ba5a982b473e3e3f4aee04aa3746e57738b512dcb37fdfd5ecfc5";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-i686/sr/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-i686/sr/thunderbird-68.1.0.tar.bz2";
       locale = "sr";
       arch = "linux-i686";
-      sha512 = "96d25f7d952e204751cd601932713418cd495d11364430a37ecfa36333113a6132209b8e8f0ec337799ed02b71b388f43e22a53fa168f17e4d15e7594170299a";
+      sha512 = "4c71511375333802f903cb632963933054a969c02a3fb23f4416e0cb3c21e18147bbffb28572f8ac90aa5bc3c4138b25590c42610c20a14b5e8eddb1edf28c28";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-i686/sv-SE/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-i686/sv-SE/thunderbird-68.1.0.tar.bz2";
       locale = "sv-SE";
       arch = "linux-i686";
-      sha512 = "8bc790d7951469e2dfa2499622464cf55427a6bc93dec50b18f014ac079ec0579b91a11680e4104f7d6a38f60d467e9fb3c9ee7ab83b64f8dae2c1e979150bd3";
+      sha512 = "5d7d569f4eb9ed738f54139a90e9a01e9e771a553af193357d45765bd54815a096ddc31ac69620d6f14516e8f41f1c0fb8f16a848e13273d0c18b9c047d85fb4";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-i686/tr/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-i686/tr/thunderbird-68.1.0.tar.bz2";
       locale = "tr";
       arch = "linux-i686";
-      sha512 = "2c40fa3e6ecfb68507897e669bed229ed98e1b4a3998b55b59523d3cec1fc5553cfacbd9be3d55f7a32b612ee662dfda7c8a21a4c26c750d48b87d31368a9942";
+      sha512 = "fc8892f85032d9fcce76c3fa971531f4039b8bb9e1812776bb3e7c5b68474543b5db4007f79e81abc1685c74f0574201236aab8a2df05ac10fcaade7c57ca3c2";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-i686/uk/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-i686/uk/thunderbird-68.1.0.tar.bz2";
       locale = "uk";
       arch = "linux-i686";
-      sha512 = "5eee26a500c1d4bf71222987523cc3e5f144aca02c17c88a01d4b68f9ac5e1298407460c69504d0a7b1e5727755cb32e2ae523cd97766419848c1b6dc0a30bf0";
+      sha512 = "80335f326bde31f4b1e269cd756b4b41ff3a632023f09447abf6d1964381f8f9657a4f47ed6af63a3eb0cd4e84e5bced595eec07cc0a9e30ad8d3cf3d08026df";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-i686/uz/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-i686/uz/thunderbird-68.1.0.tar.bz2";
       locale = "uz";
       arch = "linux-i686";
-      sha512 = "51a0fc8dc30cc82f7d3b222167aaa8ea0225b4136ebacee38687cdc1235c0720da14cd2a3e1875a4c4bfa3bb8fd9045541ca6df736115312ac49a2db2ef83639";
+      sha512 = "2434a8a063b0d1019220579bc83160217d5c269b24ad83a9ed0969425a1fc9d9ed8b190c291d87c34379928aa6c2329d3b5ad287b44177dd61f680081cd7caf9";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-i686/vi/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-i686/vi/thunderbird-68.1.0.tar.bz2";
       locale = "vi";
       arch = "linux-i686";
-      sha512 = "bb02dd69a8c8d514666fedb9d7de520f6ea89740956ddcd9d7f90175bca6f7bcf79b573c6e5ecd6fdfcdd15aa2a35881e8877074fbb795019eccff52cb943a91";
+      sha512 = "0e33f1a2f8cd67bdb523180af0b8afa5fbbb3628b0b9407f2a4ae609c7155b33fd85a1f23d9b74097fefb045fd0b437f58971cc4c4d5f391398d6ea7429b921e";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-i686/zh-CN/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-i686/zh-CN/thunderbird-68.1.0.tar.bz2";
       locale = "zh-CN";
       arch = "linux-i686";
-      sha512 = "408599229da40b2ce1a23ec1e5b12c7f4a24fb63524d792d50764cdfbcc6774dd7f651ba2dce46bccd94937e24b4b08d8bf37b6fb839c61540dfbf36f6d3e6b2";
+      sha512 = "27d1d9b3c30ab1dd863362139f91b79ffb7e36e87ff1f7f07162ea3e86a58962136e43cca3212e4263908f63dfe3a3c53bb3db3085e5b4bf07e0ff88408822d8";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.0/linux-i686/zh-TW/thunderbird-68.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/68.1.0/linux-i686/zh-TW/thunderbird-68.1.0.tar.bz2";
       locale = "zh-TW";
       arch = "linux-i686";
-      sha512 = "d75c9bfc6234fa0ddc56b7c1dace76b789e29c0cb03ff17395eeba020a82431e457271e95117731963f2666295b94746d0370bf0e85f9c3646836830684bca45";
+      sha512 = "2141f0ad5d11daf3a94f3a737801ec0234a7f2d869320d4859d771ab92a6e59bf13139b4048a7239640635051a9228e6cbf55746402ed35cb398d93a3d129439";
     }
     ];
 }

From bab6e6eb043ea3f1e4be130b807a94d24d19b2e0 Mon Sep 17 00:00:00 2001
From: schneefux <schneefux+commit@schneefux.xyz>
Date: Sat, 14 Sep 2019 11:26:22 +0200
Subject: [PATCH 112/152] nixos/gitlab: Remove todo about mysql support

GitLab has ended MySQL support.
https://about.gitlab.com/2019/06/27/removing-mysql-support/
---
 nixos/modules/services/misc/gitlab.nix | 2 --
 1 file changed, 2 deletions(-)

diff --git a/nixos/modules/services/misc/gitlab.nix b/nixos/modules/services/misc/gitlab.nix
index bcf0603c6f39..66da6864fca9 100644
--- a/nixos/modules/services/misc/gitlab.nix
+++ b/nixos/modules/services/misc/gitlab.nix
@@ -1,7 +1,5 @@
 { config, lib, pkgs, utils, ... }:
 
-# TODO: support non-postgresql
-
 with lib;
 
 let

From 76538e570187c3d1a5fa038b9e81d7c0d09b5edb Mon Sep 17 00:00:00 2001
From: taku0 <mxxouy6x3m_github@tatapa.org>
Date: Sat, 14 Sep 2019 18:26:26 +0900
Subject: [PATCH 113/152] thunderbird: 68.0 -> 68.1.0

---
 .../networking/mailreaders/thunderbird/default.nix            | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/mailreaders/thunderbird/default.nix b/pkgs/applications/networking/mailreaders/thunderbird/default.nix
index f2b4cfb4befc..1617ccd7dd1b 100644
--- a/pkgs/applications/networking/mailreaders/thunderbird/default.nix
+++ b/pkgs/applications/networking/mailreaders/thunderbird/default.nix
@@ -25,11 +25,11 @@ let
   gcc = if stdenv.cc.isGNU then stdenv.cc.cc else stdenv.cc.cc.gcc;
 in stdenv.mkDerivation rec {
   pname = "thunderbird";
-  version = "68.0";
+  version = "68.1.0";
 
   src = fetchurl {
     url = "mirror://mozilla/thunderbird/releases/${version}/source/thunderbird-${version}.source.tar.xz";
-    sha512 = "2cz583rwfpj4z5cwg2vfy4ha0pz4xs9g7li078rmk6x19haiv8s9fwijd82xgxax0afn8wk80bq5kd8yz38l9432f6bar8xnwb21y4i";
+    sha512 = "06036nawpm987q33567nhz55qybbcl55h5rdhjbhck5qmyj1qi383xqac5niwyk7c0gaq4ygwc5a24pysf85crjdway2zmqyjxp2apb";
   };
 
   # from firefox, but without sound libraries

From 7f136b5a5607059c3dca1967ffaca126e3d1fe29 Mon Sep 17 00:00:00 2001
From: Maximilian Bosch <maximilian@mbosch.me>
Date: Sat, 14 Sep 2019 01:45:39 +0200
Subject: [PATCH 114/152] nixos/hydra: fix test

We ship `https://cache.nixos.org` as binary cache by default which
automatically substitutes the test derivation used inside the Hydra
test. However it needs to be built locally to confirm that
`hydra-queue-runner` works properly.

Also inherited the platform name for the test derivation from `system`
to ensure that the build can be tested on each supported platform.

ZHF #68361
---
 nixos/tests/hydra/default.nix | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/nixos/tests/hydra/default.nix b/nixos/tests/hydra/default.nix
index f99b367ac9b7..76000450921a 100644
--- a/nixos/tests/hydra/default.nix
+++ b/nixos/tests/hydra/default.nix
@@ -8,8 +8,10 @@ let
   trivialJob = pkgs.writeTextDir "trivial.nix" ''
    { trivial = builtins.derivation {
        name = "trivial";
-       system = "x86_64-linux";
+       system = "${system}";
        builder = "/bin/sh";
+       allowSubstitutes = false;
+       preferLocalBuild = true;
        args = ["-c" "echo success > $out; exit 0"];
      };
    }
@@ -57,7 +59,7 @@ let
             nix = {
               buildMachines = [{
                 hostName = "localhost";
-                systems = [ "x86_64-linux" ];
+                systems = [ system ];
               }];
 
               binaryCaches = [];

From c659b70e863aceffed616a0b0fe1a06c492896ea Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Fri, 13 Sep 2019 21:34:13 -0500
Subject: [PATCH 115/152] z-lua: 1.7.2 -> 1.7.3, lua-filesystem so _ZL_USE_LFS
 can be used

https://github.com/skywind3000/z.lua/releases/tag/v1.7.3
---
 pkgs/tools/misc/z-lua/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/tools/misc/z-lua/default.nix b/pkgs/tools/misc/z-lua/default.nix
index aed902044f98..adce403f35d8 100644
--- a/pkgs/tools/misc/z-lua/default.nix
+++ b/pkgs/tools/misc/z-lua/default.nix
@@ -2,18 +2,18 @@
 
 stdenv.mkDerivation rec {
   pname = "z-lua";
-  version = "1.7.2";
+  version = "1.7.3";
 
   src = fetchFromGitHub {
     owner = "skywind3000";
     repo = "z.lua";
     rev = "v${version}";
-    sha256 = "17klcw2iv7d636mp7fb80kjvqd3xqkzqhwz41ri1l029dxji4zzh";
+    sha256 = "13cfdghkprkaxgrbwsjndbza2mjxm2x774lnq7q4gfyc48mzwi70";
   };
 
   dontBuild = true;
 
-  buildInputs = [ lua ];
+  buildInputs = [ (lua.withPackages (p: with p; [ luafilesystem ])) ];
 
   installPhase = ''
     install -Dm755 z.lua $out/bin/z

From aaf514d32251b075d987488345226d55e2f5bc94 Mon Sep 17 00:00:00 2001
From: geistesk <github.jyf300hj@0x21.biz>
Date: Sat, 14 Sep 2019 10:12:05 +0200
Subject: [PATCH 116/152] spaceship-prompt: 3.7.1 -> 3.11.2

---
 pkgs/shells/zsh/spaceship-prompt/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/shells/zsh/spaceship-prompt/default.nix b/pkgs/shells/zsh/spaceship-prompt/default.nix
index ad7b46a907e4..0e7536b4fa17 100644
--- a/pkgs/shells/zsh/spaceship-prompt/default.nix
+++ b/pkgs/shells/zsh/spaceship-prompt/default.nix
@@ -1,14 +1,14 @@
 { stdenv, fetchFromGitHub }:
 
-stdenv.mkDerivation {
+stdenv.mkDerivation rec {
   pname = "spaceship-prompt";
-  version = "3.7.1";
+  version = "3.11.2";
 
   src = fetchFromGitHub {
     owner = "denysdovhan";
     repo = "spaceship-prompt";
-    sha256 = "0laihax18bs254rm2sww5wkjbmkp4m5c8aicgqpi4diz7difxk6z";
-    rev = "aaa34aeab9ba0a99416788f627ec9aeffba392f0";
+    sha256 = "1q7m9mmg82n4fddfz01y95d5n34xnzhrnn1lli0vih39sgmzim9b";
+    rev = "v${version}";
   };
 
   installPhase = ''

From 91bb6cf407a55f67214311459e986be509e7fd1d Mon Sep 17 00:00:00 2001
From: WilliButz <wbutz@cyberfnord.de>
Date: Sat, 14 Sep 2019 11:57:14 +0200
Subject: [PATCH 117/152] httplz: 1.5.2 -> 1.6.0, add openssl to PATH

---
 pkgs/tools/networking/httplz/cargo-lock.patch | 681 ++++++------------
 pkgs/tools/networking/httplz/default.nix      |  23 +-
 pkgs/top-level/all-packages.nix               |   2 +-
 3 files changed, 252 insertions(+), 454 deletions(-)

diff --git a/pkgs/tools/networking/httplz/cargo-lock.patch b/pkgs/tools/networking/httplz/cargo-lock.patch
index f88998902c58..1d1632a0e82a 100644
--- a/pkgs/tools/networking/httplz/cargo-lock.patch
+++ b/pkgs/tools/networking/httplz/cargo-lock.patch
@@ -1,9 +1,9 @@
 diff --git a/Cargo.lock b/Cargo.lock
 new file mode 100644
-index 0000000..731829e
+index 0000000..fe230f5
 --- /dev/null
 +++ b/Cargo.lock
-@@ -0,0 +1,1403 @@
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-+"checksum textwrap 0.10.0 (registry+https://github.com/rust-lang/crates.io-index)" = "307686869c93e71f94da64286f9a9524c0f308a9e1c87a583de8e9c9039ad3f6"
++"checksum textwrap 0.11.0 (registry+https://github.com/rust-lang/crates.io-index)" = "d326610f408c7a4eb6f51c37c330e496b08506c9457c9d34287ecc38809fb060"
 +"checksum thread_local 0.3.6 (registry+https://github.com/rust-lang/crates.io-index)" = "c6b53e329000edc2b34dbe8545fd20e55a333362d0a321909685a19bd28c3f1b"
 +"checksum time 0.1.42 (registry+https://github.com/rust-lang/crates.io-index)" = "db8dcfca086c1143c9270ac42a2bbd8a7ee477b78ac8e45b19abfb0cbede4b6f"
 +"checksum traitobject 0.1.0 (registry+https://github.com/rust-lang/crates.io-index)" = "efd1f82c56340fdf16f2a953d7bda4f8fdffba13d93b00844c25572110b26079"
 +"checksum trivial_colours 0.3.0 (registry+https://github.com/rust-lang/crates.io-index)" = "7153365ea16c5a0ce2eebc4da1b33339a6b21d90c49f670e82130639656bb458"
 +"checksum typeable 0.1.2 (registry+https://github.com/rust-lang/crates.io-index)" = "1410f6f91f21d1612654e7cc69193b0334f909dcf2c790c4826254fbb86f8887"
 +"checksum typemap 0.3.3 (registry+https://github.com/rust-lang/crates.io-index)" = "653be63c80a3296da5551e1bfd2cca35227e13cdd08c6668903ae2f4f77aa1f6"
-+"checksum ucd-util 0.1.3 (registry+https://github.com/rust-lang/crates.io-index)" = "535c204ee4d8434478593480b8f86ab45ec9aae0e83c568ca81abf0fd0e88f86"
 +"checksum unicase 1.4.2 (registry+https://github.com/rust-lang/crates.io-index)" = "7f4765f83163b74f957c797ad9253caf97f103fb064d3999aea9568d09fc8a33"
-+"checksum unicase 2.2.0 (registry+https://github.com/rust-lang/crates.io-index)" = "9d3218ea14b4edcaccfa0df0a64a3792a2c32cc706f1b336e48867f9d3147f90"
++"checksum unicase 2.5.1 (registry+https://github.com/rust-lang/crates.io-index)" = "2e2e6bd1e59e56598518beb94fd6db628ded570326f0a98c679a304bd9f00150"
 +"checksum unicode-bidi 0.3.4 (registry+https://github.com/rust-lang/crates.io-index)" = "49f2bd0c6468a8230e1db229cff8029217cf623c767ea5d60bfbd42729ea54d5"
 +"checksum unicode-normalization 0.1.8 (registry+https://github.com/rust-lang/crates.io-index)" = "141339a08b982d942be2ca06ff8b076563cbe223d1befd5450716790d44e2426"
-+"checksum unicode-width 0.1.5 (registry+https://github.com/rust-lang/crates.io-index)" = "882386231c45df4700b275c7ff55b6f3698780a650026380e72dabe76fa46526"
++"checksum unicode-width 0.1.6 (registry+https://github.com/rust-lang/crates.io-index)" = "7007dbd421b92cc6e28410fe7362e2e0a2503394908f417b68ec8d1c364c4e20"
 +"checksum unicode-xid 0.0.4 (registry+https://github.com/rust-lang/crates.io-index)" = "8c1f860d7d29cf02cb2f3f359fd35991af3d30bac52c57d265a3c461074cb4dc"
-+"checksum unreachable 1.0.0 (registry+https://github.com/rust-lang/crates.io-index)" = "382810877fe448991dfc7f0dd6e3ae5d58088fd0ea5e35189655f84e6814fa56"
 +"checksum unsafe-any 0.4.2 (registry+https://github.com/rust-lang/crates.io-index)" = "f30360d7979f5e9c6e6cea48af192ea8fab4afb3cf72597154b8f08935bc9c7f"
 +"checksum url 1.7.2 (registry+https://github.com/rust-lang/crates.io-index)" = "dd4e7c0d531266369519a4aa4f399d748bd37043b00bde1e4ff1f60a120b355a"
-+"checksum utf8-ranges 1.0.2 (registry+https://github.com/rust-lang/crates.io-index)" = "796f7e48bef87609f7ade7e06495a87d5cd06c7866e6a5cbfceffc558a243737"
-+"checksum vcpkg 0.2.6 (registry+https://github.com/rust-lang/crates.io-index)" = "def296d3eb3b12371b2c7d0e83bfe1403e4db2d7a0bba324a12b21c4ee13143d"
++"checksum vcpkg 0.2.7 (registry+https://github.com/rust-lang/crates.io-index)" = "33dd455d0f96e90a75803cfeb7f948768c08d70a6de9a8d2362461935698bf95"
 +"checksum vec_map 0.8.1 (registry+https://github.com/rust-lang/crates.io-index)" = "05c78687fb1a80548ae3250346c3db86a80a7cdd77bda190189f2d0a0987c81a"
 +"checksum version_check 0.1.5 (registry+https://github.com/rust-lang/crates.io-index)" = "914b1a6776c4c929a602fafd8bc742e06365d4bcbe48c30f9cca5824f70dc9dd"
 +"checksum void 1.0.2 (registry+https://github.com/rust-lang/crates.io-index)" = "6a02e4885ed3bc0f2de90ea6dd45ebcbb66dacffe03547fadbb0eeae2770887d"
-+"checksum wasi 0.5.0 (registry+https://github.com/rust-lang/crates.io-index)" = "fd5442abcac6525a045cc8c795aedb60da7a2e5e89c7bf18a0d5357849bb23c7"
-+"checksum winapi 0.2.8 (registry+https://github.com/rust-lang/crates.io-index)" = "167dc9d6949a9b857f3451275e911c3f44255842c1f7a76f33c55103a909087a"
-+"checksum winapi 0.3.6 (registry+https://github.com/rust-lang/crates.io-index)" = "92c1eb33641e276cfa214a0522acad57be5c56b10cb348b3c5117db75f3ac4b0"
-+"checksum winapi-build 0.1.1 (registry+https://github.com/rust-lang/crates.io-index)" = "2d315eee3b34aca4797b2da6b13ed88266e6d612562a0c46390af8299fc699bc"
++"checksum vswhom 0.1.0 (registry+https://github.com/rust-lang/crates.io-index)" = "be979b7f07507105799e854203b470ff7c78a1639e330a58f183b5fea574608b"
++"checksum vswhom-sys 0.1.0 (registry+https://github.com/rust-lang/crates.io-index)" = "fc2f5402d3d0e79a069714f7b48e3ecc60be7775a2c049cb839457457a239532"
++"checksum wasi 0.7.0 (registry+https://github.com/rust-lang/crates.io-index)" = "b89c3ce4ce14bdc6fb6beaf9ec7928ca331de5df7e5ea278375642a2f478570d"
++"checksum winapi 0.3.8 (registry+https://github.com/rust-lang/crates.io-index)" = "8093091eeb260906a183e6ae1abdba2ef5ef2257a21801128899c3fc699229c6"
 +"checksum winapi-i686-pc-windows-gnu 0.4.0 (registry+https://github.com/rust-lang/crates.io-index)" = "ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6"
 +"checksum winapi-x86_64-pc-windows-gnu 0.4.0 (registry+https://github.com/rust-lang/crates.io-index)" = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f"
-+"checksum winreg 0.4.0 (registry+https://github.com/rust-lang/crates.io-index)" = "cbf285379f20d7f26abd990d9a566be9d31ab7a9d335299baaa1f0604f5f96af"
++"checksum winreg 0.5.1 (registry+https://github.com/rust-lang/crates.io-index)" = "a27a759395c1195c4cc5cda607ef6f8f6498f64e78f7900f5de0a127a424704a"
diff --git a/pkgs/tools/networking/httplz/default.nix b/pkgs/tools/networking/httplz/default.nix
index 001041a0799e..6c84ac8da709 100644
--- a/pkgs/tools/networking/httplz/default.nix
+++ b/pkgs/tools/networking/httplz/default.nix
@@ -1,25 +1,36 @@
-{ stdenv, lib, fetchFromGitHub, rustPlatform, openssl, pkgconfig, darwin, libiconv }:
+{ stdenv, lib, fetchFromGitHub, makeWrapper, rustPlatform
+, openssl, pkgconfig, darwin, libiconv }:
 
 rustPlatform.buildRustPackage rec {
   pname = "httplz";
-  version = "1.5.2";
+  version = "1.6.0";
 
   src = fetchFromGitHub {
     owner = "thecoshman";
     repo = "http";
     rev = "v${version}";
-    sha256 = "0q9ng8vf01k65zmcm7bbkqyrkj5hs86zdxwrfj98f4xqxrm75rf6";
+    sha256 = "1y9mlbympb19i3iw7s7jm7lvkpcl4w0sig6jnd4w3ykhkdhzh6di";
   };
 
-  buildInputs = [ openssl pkgconfig ] ++ lib.optionals stdenv.isDarwin [ libiconv darwin.apple_sdk.frameworks.Security ];
+  nativeBuildInputs = [ makeWrapper ];
+  buildInputs = [
+    openssl pkgconfig
+  ] ++ lib.optionals stdenv.isDarwin [
+    libiconv darwin.apple_sdk.frameworks.Security
+  ];
 
   cargoBuildFlags = [ "--bin httplz" ];
   cargoPatches = [ ./cargo-lock.patch ];
-  cargoSha256 = "18qr3sy4zj4lwbzrz98d82kwagfbzkmrxk5sxl7w9vhdzy2diskw";
+  cargoSha256 = "1bxh7p2a04lpghqms8cx1f1cq5nbcx6cxh5ac7i72d5vzy4v07nl";
+
+  postInstall = ''
+    wrapProgram $out/bin/httplz \
+      --prefix PATH : "${openssl}/bin"
+  '';
 
   meta = with stdenv.lib; {
     description = "A basic http server for hosting a folder fast and simply";
-    homepage = https://github.com/thecoshman/http;
+    homepage = "https://github.com/thecoshman/http";
     license = licenses.mit;
     maintainers = with maintainers; [ bbigras ];
   };
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 77510a4d65d6..bd67fe85526b 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -3855,7 +3855,7 @@ in
 
   httping = callPackage ../tools/networking/httping {};
 
-  httplz = callPackage ../tools/networking/httplz { openssl = openssl_1_0_2; };
+  httplz = callPackage ../tools/networking/httplz { };
 
   httpfs2 = callPackage ../tools/filesystems/httpfs { };
 

From 2f4fffd9c9cb13a5860a02fdf807db54e11d0fb6 Mon Sep 17 00:00:00 2001
From: Vladyslav M <dywedir@gra.red>
Date: Sat, 14 Sep 2019 13:01:48 +0300
Subject: [PATCH 118/152] broot: 0.9.0 -> 0.9.4

---
 pkgs/tools/misc/broot/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/tools/misc/broot/default.nix b/pkgs/tools/misc/broot/default.nix
index b183df701a70..93084640e763 100644
--- a/pkgs/tools/misc/broot/default.nix
+++ b/pkgs/tools/misc/broot/default.nix
@@ -2,16 +2,16 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "broot";
-  version = "0.9.0";
+  version = "0.9.4";
 
   src = fetchFromGitHub {
     owner = "Canop";
     repo = pname;
     rev = "v${version}";
-    sha256 = "0i6ayp295xnppq92lc1fsfyrjkxrkvsva07yby45qa0l92nihqpy";
+    sha256 = "1im04vlhmjdwzp19pizk4bmzvybgjg40ig833qx5lbisfs74xyxw";
   };
 
-  cargoSha256 = "1qdi1l0k0v00r9mfxgf09dzkvgxn07rcsl2yyyrhvcn731ak302y";
+  cargoSha256 = "0675995zh9nn690kdha3zfsa157173rxwcqz0kasbl9byjczi6sm";
 
   meta = with stdenv.lib; {
     description = "An interactive tree view, a fuzzy search, a balanced BFS descent and customizable commands";

From e5e6b514f5d4ec28a29e8a8489cb5c55101b4654 Mon Sep 17 00:00:00 2001
From: obadz <obadz-git@obadz.com>
Date: Sat, 14 Sep 2019 11:11:30 +0100
Subject: [PATCH 119/152] citrix-receiver: decomission in favor of
 citrix-workspace.

Already documented in #64645
---
 doc/package-specific-user-notes.xml           |   6 +-
 nixos/doc/manual/release-notes/rl-1909.xml    |   6 +
 .../remote/citrix-receiver/default.nix        | 215 ------------------
 .../remote/citrix-receiver/wrapper.nix        |  19 --
 pkgs/top-level/all-packages.nix               |  27 +--
 5 files changed, 15 insertions(+), 258 deletions(-)
 delete mode 100644 pkgs/applications/networking/remote/citrix-receiver/default.nix
 delete mode 100644 pkgs/applications/networking/remote/citrix-receiver/wrapper.nix

diff --git a/doc/package-specific-user-notes.xml b/doc/package-specific-user-notes.xml
index a176f4d13959..ef23b022c887 100644
--- a/doc/package-specific-user-notes.xml
+++ b/doc/package-specific-user-notes.xml
@@ -416,7 +416,7 @@ overrides = self: super: rec {
     <para>
      Please note that the <literal>citrix_receiver</literal> package has been deprecated since its
      development was <link xlink:href="https://docs.citrix.com/en-us/citrix-workspace-app.html">discontinued by upstream</link>
-     and will be replaced by <link xlink:href="https://www.citrix.com/products/workspace-app/">the citrix workspace app</link>.
+     and has been replaced by <link xlink:href="https://www.citrix.com/products/workspace-app/">the citrix workspace app</link>.
     </para>
    </note>
    <link xlink:href="https://www.citrix.com/products/receiver/">Citrix Receiver</link> and
@@ -458,7 +458,7 @@ overrides = self: super: rec {
    <title>Custom certificates</title>
 
    <para>
-    The <literal>Citrix Receiver</literal> and <literal>Citrix Workspace App</literal>
+    The <literal>Citrix Workspace App</literal>
     in <literal>nixpkgs</literal> trust several certificates
     <link xlink:href="https://curl.haxx.se/docs/caextract.html">from the
     Mozilla database</link> by default. However several companies using Citrix
@@ -472,7 +472,7 @@ overrides = self: super: rec {
 <programlisting>
 <![CDATA[with import <nixpkgs> { config.allowUnfree = true; };
 let extraCerts = [ ./custom-cert-1.pem ./custom-cert-2.pem /* ... */ ]; in
-citrix_workspace.override { # the same applies for `citrix_receiver` if used.
+citrix_workspace.override {
   inherit extraCerts;
 }]]>
 </programlisting>
diff --git a/nixos/doc/manual/release-notes/rl-1909.xml b/nixos/doc/manual/release-notes/rl-1909.xml
index f9cea242c153..58ab7207f533 100644
--- a/nixos/doc/manual/release-notes/rl-1909.xml
+++ b/nixos/doc/manual/release-notes/rl-1909.xml
@@ -478,6 +478,12 @@
      Prometheus 2 is now configured with <literal>services.prometheus</literal>.
     </para>
    </listitem>
+   <listitem>
+     <para>
+       Citrix Receiver (<literal>citrix_receiver</literal>) has been dropped in favor of Citrix Workspace
+       (<literal>citrix_workspace</literal>).
+     </para>
+   </listitem>
   </itemizedlist>
  </section>
 
diff --git a/pkgs/applications/networking/remote/citrix-receiver/default.nix b/pkgs/applications/networking/remote/citrix-receiver/default.nix
deleted file mode 100644
index 8d21f64765dc..000000000000
--- a/pkgs/applications/networking/remote/citrix-receiver/default.nix
+++ /dev/null
@@ -1,215 +0,0 @@
-{ stdenv
-, lib
-, fetchurl
-, requireFile
-, makeWrapper
-, libredirect
-, busybox
-, file
-, makeDesktopItem
-, tzdata
-, cacert
-, glib
-, gtk2
-, atk
-, gdk-pixbuf
-, cairo
-, pango
-, gnome3
-, xorg
-, libpng12
-, freetype
-, fontconfig
-, gtk_engines
-, alsaLib
-, libidn
-, zlib
-, version ? "13.10.0"
-}:
-
-let
-  # In 56e1bdc7f9c (libidn: 1.34 -> 1.35), libidn.so.11 became libidn.so.12.
-  # Citrix looks for the former so we build version 1.34 to please the binary
-  libidn_134 = libidn.overrideDerivation (_: rec {
-    name = "libidn-1.34";
-    src = fetchurl {
-      url = "mirror://gnu/libidn/${name}.tar.gz";
-      sha256 = "0g3fzypp0xjcgr90c5cyj57apx1cmy0c6y9lvw2qdcigbyby469p";
-    };
-  });
-
-  versionInfo = let
-    supportedVersions = {
-      "13.10.0" = {
-        major     = "13";
-        minor     = "10";
-        patch     = "0";
-        x64hash   = "7025688C7891374CDA11C92FC0BA2FA8151AEB4C4D31589AD18747FAE943F6EA";
-        x86hash   = "2DCA3C8EDED11C5D824D579BC3A6B7D531EAEDDCBFB16E91B5702C72CAE9DEE4";
-        x64suffix = "20";
-        x86suffix = "20";
-        homepage  = https://www.citrix.com/downloads/citrix-receiver/linux/receiver-for-linux-latest.html;
-      };
-    };
-
-    # break an evaluation for old Citrix versions rather than exiting with
-    # an "attribute name not found" error to avoid confusion.
-    deprecatedVersions = let
-      versions = [ "13.8.0" "13.9.0" "13.9.1" ];
-    in
-      lib.listToAttrs
-        (lib.forEach versions
-          (v: lib.nameValuePair v (throw "Unsupported citrix_receiver version: ${v}")));
-  in
-    deprecatedVersions // supportedVersions;
-
-  citrixReceiverForVersion = { major, minor, patch, x86hash, x64hash, x86suffix, x64suffix, homepage }:
-    stdenv.mkDerivation rec {
-      pname = "citrix-receiver";
-      version  = "${major}.${minor}.${patch}";
-      inherit homepage;
-
-      prefixWithBitness = if stdenv.is64bit then "linuxx64" else "linuxx86";
-
-      src = requireFile rec {
-        name    = if stdenv.is64bit then "${prefixWithBitness}-${version}.${x64suffix}.tar.gz" else "${prefixWithBitness}-${version}.${x86suffix}.tar.gz";
-        sha256  = if stdenv.is64bit then x64hash else x86hash;
-        message = ''
-          In order to use Citrix Receiver, you need to comply with the Citrix EULA and download
-          the ${if stdenv.is64bit then "64-bit" else "32-bit"} binaries, .tar.gz from:
-
-          ${homepage}
-
-          (if you do not find version ${version} there, try at
-          https://www.citrix.com/downloads/citrix-receiver/legacy-receiver-for-linux/
-          or at https://www.citrix.com/downloads/citrix-receiver/ under "Earlier Versions of Receiver for Linux")
-
-          Once you have downloaded the file, please use the following command and re-run the
-          installation:
-
-          nix-prefetch-url file://\$PWD/${name}
-        '';
-      };
-
-      dontBuild = true;
-
-      sourceRoot = ".";
-
-      buildInputs = [
-        makeWrapper
-        busybox
-        file
-        gtk2
-        gdk-pixbuf
-      ];
-
-      libPath = stdenv.lib.makeLibraryPath [
-        glib
-        gtk2
-        atk
-        gdk-pixbuf
-        cairo
-        pango
-        gnome3.dconf
-        xorg.libX11
-        xorg.libXext
-        xorg.libXrender
-        xorg.libXinerama
-        xorg.libXfixes
-        libpng12
-        libidn_134
-        zlib
-        gtk_engines
-        freetype
-        fontconfig
-        alsaLib
-        stdenv.cc.cc # Fixes: Can not load [..]/opt/citrix-icaclient/lib/ctxh264_fb.so:(null)
-      ];
-
-      desktopItem = makeDesktopItem {
-        name        = "wfica";
-        desktopName = "Citrix Receiver";
-        genericName = "Citrix Receiver";
-        exec        = "wfica";
-        icon        = "wfica";
-        comment     = "Connect to remote Citrix server";
-        categories  = "GTK;GNOME;X-GNOME-NetworkSettings;Network;";
-        mimeType    = "application/x-ica";
-      };
-
-      installPhase = ''
-        runHook preInstall
-
-        export ICAInstDir="$out/opt/citrix-icaclient"
-
-        sed -i \
-          -e 's,^main_install_menu$,install_ICA_client,g' \
-          -e 's,^integrate_ICA_client(),alias integrate_ICA_client=true\nintegrate_ICA_client_old(),g' \
-          -e 's,^ANSWER=""$,ANSWER="$INSTALLER_YES",' \
-          -e 's,/bin/true,true,g' \
-          ./${prefixWithBitness}/hinst
-
-        # Run the installer...
-        bash ./${prefixWithBitness}/hinst CDROM "`pwd`"
-
-        echo "Deleting broken links..."
-        for link in `find $ICAInstDir -type l `
-        do
-          [ -f "$link" ] || rm -v "$link"
-        done
-
-        echo "Expanding certificates..."
-        # As explained in https://wiki.archlinux.org/index.php/Citrix#Security_Certificates
-        pushd "$ICAInstDir/keystore/cacerts"
-        awk 'BEGIN {c=0;} /BEGIN CERT/{c++} { print > "cert." c ".pem"}' < ${cacert}/etc/ssl/certs/ca-bundle.crt
-        popd
-
-        echo "Patching executables..."
-        find $ICAInstDir -type f -exec file {} \; |
-          grep 'ELF.*executable' |
-          cut -f 1 -d : |
-          grep -vi '\(.dll\|.so\)$' | # added as a workaround to https://github.com/NixOS/nixpkgs/issues/41729
-          while read f
-          do
-            echo "Patching ELF intrepreter and rpath for $f"
-            chmod u+w "$f"
-            patchelf \
-              --set-interpreter $(cat $NIX_CC/nix-support/dynamic-linker) \
-              --set-rpath "$ICAInstDir:$libPath" "$f"
-          done
-
-        echo "Wrapping wfica..."
-        mkdir "$out/bin"
-
-        makeWrapper "$ICAInstDir/wfica" "$out/bin/wfica" \
-          --add-flags "-icaroot $ICAInstDir" \
-          --set ICAROOT "$ICAInstDir" \
-          --set GTK_PATH "${gtk2.out}/lib/gtk-2.0:${gnome3.gnome-themes-extra}/lib/gtk-2.0" \
-          --set GDK_PIXBUF_MODULE_FILE "$GDK_PIXBUF_MODULE_FILE" \
-          --set LD_PRELOAD "${libredirect}/lib/libredirect.so" \
-          --set LD_LIBRARY_PATH "$libPath" \
-          --set NIX_REDIRECTS "/usr/share/zoneinfo=${tzdata}/share/zoneinfo:/etc/zoneinfo=${tzdata}/share/zoneinfo:/etc/timezone=$ICAInstDir/timezone"
-
-        echo "We arbitrarily set the timezone to UTC. No known consequences at this point."
-        echo UTC > "$ICAInstDir/timezone"
-
-        echo "Installing desktop item..."
-        mkdir -p $out/share/applications
-        cp ${desktopItem}/share/applications/* $out/share/applications
-
-        # We introduce a dependency on the source file so that it need not be redownloaded everytime
-        echo $src >> "$out/share/nix_dependencies.pin"
-
-        runHook postInstall
-      '';
-
-      meta = with stdenv.lib; {
-        license     = stdenv.lib.licenses.unfree;
-        inherit homepage;
-        description = "Citrix Receiver";
-        maintainers = with maintainers; [ obadz a1russell ma27 ];
-        platforms   = platforms.linux;
-      };
-    };
-
-in citrixReceiverForVersion (lib.getAttr version versionInfo)
diff --git a/pkgs/applications/networking/remote/citrix-receiver/wrapper.nix b/pkgs/applications/networking/remote/citrix-receiver/wrapper.nix
deleted file mode 100644
index 63587030b38e..000000000000
--- a/pkgs/applications/networking/remote/citrix-receiver/wrapper.nix
+++ /dev/null
@@ -1,19 +0,0 @@
-{ citrix_receiver, extraCerts ? [], symlinkJoin }:
-
-let
-
-  mkCertCopy = certPath:
-    "cp ${certPath} $out/opt/citrix-icaclient/keystore/cacerts/";
-
-in
-
-if builtins.length extraCerts == 0 then citrix_receiver else symlinkJoin {
-  name = "citrix-with-extra-certs-${citrix_receiver.version}";
-  paths = [ citrix_receiver ];
-
-  postBuild = ''
-    ${builtins.concatStringsSep "\n" (map mkCertCopy extraCerts)}
-
-    sed -i -E "s,-icaroot (.+citrix-icaclient),-icaroot $out/opt/citrix-icaclient," $out/bin/wfica
-  '';
-}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 77510a4d65d6..1ce8eede2027 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -2220,27 +2220,12 @@ in
 
   circleci-cli = callPackage ../development/tools/misc/circleci-cli { };
 
-  citrix_receiver_unwrapped = callPackage ../applications/networking/remote/citrix-receiver { };
-  citrix_receiver_unwrapped_13_10_0 = citrix_receiver_unwrapped.override { version = "13.10.0"; };
-  citrix_receiver_unwrapped_13_9_1  = citrix_receiver_unwrapped.override { version = "13.9.1";  };
-  citrix_receiver_unwrapped_13_9_0  = citrix_receiver_unwrapped.override { version = "13.9.0";  };
-  citrix_receiver_unwrapped_13_8_0  = citrix_receiver_unwrapped.override { version = "13.8.0";  };
-
-  citrix_receiver = callPackage ../applications/networking/remote/citrix-receiver/wrapper.nix {
-    citrix_receiver = citrix_receiver_unwrapped;
-  };
-  citrix_receiver_13_10_0 = callPackage ../applications/networking/remote/citrix-receiver/wrapper.nix {
-    citrix_receiver = citrix_receiver_unwrapped_13_10_0;
-  };
-  citrix_receiver_13_9_1 = callPackage ../applications/networking/remote/citrix-receiver/wrapper.nix {
-    citrix_receiver = citrix_receiver_unwrapped_13_9_1;
-  };
-  citrix_receiver_13_9_0 = callPackage ../applications/networking/remote/citrix-receiver/wrapper.nix {
-    citrix_receiver = citrix_receiver_unwrapped_13_9_0;
-  };
-  citrix_receiver_13_8_0 = callPackage ../applications/networking/remote/citrix-receiver/wrapper.nix {
-    citrix_receiver = citrix_receiver_unwrapped_13_8_0;
-  };
+  # Cleanup before 20.03:
+  citrix_receiver = throw "citrix_receiver has been discontinued by Citrix (https://docs.citrix.com/en-us/citrix-workspace-app.html). Please use citrix_workspace.";
+  citrix_receiver_13_10_0 = citrix_receiver;
+  citrix_receiver_13_9_1  = citrix_receiver;
+  citrix_receiver_13_9_0  = citrix_receiver;
+  citrix_receiver_13_8_0  = citrix_receiver;
 
   citrix_workspace_unwrapped = callPackage ../applications/networking/remote/citrix-workspace { };
   citrix_workspace_unwrapped_19_8_0 = citrix_workspace_unwrapped.override { version = "19.8.0"; };

From 148c82e07e91222b82fe5fc448cbe6a11d695fe3 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Miguel=20Madrid=20Menc=C3=ADa?=
 <miguel.madrid.mencia@gmail.com>
Date: Sat, 14 Sep 2019 12:15:46 +0200
Subject: [PATCH 120/152] maintainer: mimadrid: update github username and
 personal data

---
 maintainers/maintainer-list.nix                        | 10 +++++-----
 pkgs/applications/graphics/gthumb/default.nix          |  2 +-
 pkgs/applications/science/biology/bcftools/default.nix |  2 +-
 pkgs/applications/science/biology/igv/default.nix      |  2 +-
 pkgs/applications/science/biology/samtools/default.nix |  2 +-
 pkgs/applications/science/math/weka/default.nix        |  2 +-
 pkgs/applications/science/misc/cytoscape/default.nix   |  2 +-
 pkgs/applications/version-management/meld/default.nix  |  2 +-
 pkgs/data/misc/shared-mime-info/default.nix            |  2 +-
 .../libraries/science/biology/htslib/default.nix       |  2 +-
 .../development/tools/misc/universal-ctags/default.nix |  2 +-
 pkgs/games/klavaro/default.nix                         |  2 +-
 12 files changed, 16 insertions(+), 16 deletions(-)

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index f28161573dd0..3a761915d8ae 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -4156,11 +4156,11 @@
     email = "miltador@yandex.ua";
     name = "Vasiliy Solovey";
   };
-  mimadrid = {
-    email = "mimadrid@ucm.es";
-    github = "mimadrid";
+  mimame = {
+    email = "miguel.madrid.mencia@gmail.com";
+    github = "mimame";
     githubId = 3269878;
-    name = "Miguel Madrid";
+    name = "Miguel Madrid Mencía";
   };
   minijackson = {
     email = "minijackson@riseup.net";
@@ -6649,7 +6649,7 @@
     githubId = 1525767;
     name = "Vaibhav Sagar";
   };
-  valebes = {  
+  valebes = {
     email = "valebes@gmail.com";
     github = "valebes";
     githubid = 10956211;
diff --git a/pkgs/applications/graphics/gthumb/default.nix b/pkgs/applications/graphics/gthumb/default.nix
index 6bcee18651b0..f24d57786ef2 100644
--- a/pkgs/applications/graphics/gthumb/default.nix
+++ b/pkgs/applications/graphics/gthumb/default.nix
@@ -103,6 +103,6 @@ stdenv.mkDerivation rec {
     description = "Image browser and viewer for GNOME";
     platforms = platforms.linux;
     license = licenses.gpl2Plus;
-    maintainers = [ maintainers.mimadrid ];
+    maintainers = [ maintainers.mimame ];
   };
 }
diff --git a/pkgs/applications/science/biology/bcftools/default.nix b/pkgs/applications/science/biology/bcftools/default.nix
index d8ffbb74e6b0..33e4de0d95aa 100644
--- a/pkgs/applications/science/biology/bcftools/default.nix
+++ b/pkgs/applications/science/biology/bcftools/default.nix
@@ -32,6 +32,6 @@ stdenv.mkDerivation rec {
     license = licenses.mit;
     homepage = http://www.htslib.org/;
     platforms = platforms.unix;
-    maintainers = [ maintainers.mimadrid ];
+    maintainers = [ maintainers.mimame ];
   };
 }
diff --git a/pkgs/applications/science/biology/igv/default.nix b/pkgs/applications/science/biology/igv/default.nix
index 412b55f59163..04699a84b692 100644
--- a/pkgs/applications/science/biology/igv/default.nix
+++ b/pkgs/applications/science/biology/igv/default.nix
@@ -28,6 +28,6 @@ stdenv.mkDerivation rec {
     description = "A visualization tool for interactive exploration of genomic datasets";
     license = licenses.lgpl21;
     platforms = platforms.unix;
-    maintainers = [ maintainers.mimadrid ];
+    maintainers = [ maintainers.mimame ];
   };
 }
diff --git a/pkgs/applications/science/biology/samtools/default.nix b/pkgs/applications/science/biology/samtools/default.nix
index dd1a53472dbc..daa2925de7c4 100644
--- a/pkgs/applications/science/biology/samtools/default.nix
+++ b/pkgs/applications/science/biology/samtools/default.nix
@@ -29,6 +29,6 @@ stdenv.mkDerivation rec {
     license = licenses.mit;
     homepage = http://www.htslib.org/;
     platforms = platforms.unix;
-    maintainers = [ maintainers.mimadrid ];
+    maintainers = [ maintainers.mimame ];
   };
 }
diff --git a/pkgs/applications/science/math/weka/default.nix b/pkgs/applications/science/math/weka/default.nix
index 90278a744f15..ec9ea0b85331 100644
--- a/pkgs/applications/science/math/weka/default.nix
+++ b/pkgs/applications/science/math/weka/default.nix
@@ -25,7 +25,7 @@ stdenv.mkDerivation rec {
     homepage = http://www.cs.waikato.ac.nz/ml/weka/;
     description = "Collection of machine learning algorithms for data mining tasks";
     license = stdenv.lib.licenses.gpl2Plus;
-    maintainers = [ stdenv.lib.maintainers.mimadrid ];
+    maintainers = [ stdenv.lib.maintainers.mimame ];
     platforms = stdenv.lib.platforms.unix;
   };
 }
diff --git a/pkgs/applications/science/misc/cytoscape/default.nix b/pkgs/applications/science/misc/cytoscape/default.nix
index 2e19012af874..8c8c09d25a0a 100644
--- a/pkgs/applications/science/misc/cytoscape/default.nix
+++ b/pkgs/applications/science/misc/cytoscape/default.nix
@@ -28,7 +28,7 @@ stdenv.mkDerivation rec {
     homepage = http://www.cytoscape.org;
     description = "A general platform for complex network analysis and visualization";
     license = stdenv.lib.licenses.lgpl21;
-    maintainers = [stdenv.lib.maintainers.mimadrid];
+    maintainers = [stdenv.lib.maintainers.mimame];
     platforms = stdenv.lib.platforms.unix;
   };
 }
diff --git a/pkgs/applications/version-management/meld/default.nix b/pkgs/applications/version-management/meld/default.nix
index 168827c3548f..5342a0697ab2 100644
--- a/pkgs/applications/version-management/meld/default.nix
+++ b/pkgs/applications/version-management/meld/default.nix
@@ -60,6 +60,6 @@ python3.pkgs.buildPythonApplication rec {
     homepage = http://meldmerge.org/;
     license = licenses.gpl2;
     platforms = platforms.linux ++ platforms.darwin;
-    maintainers = with maintainers; [ jtojnar mimadrid ];
+    maintainers = with maintainers; [ jtojnar mimame ];
   };
 }
diff --git a/pkgs/data/misc/shared-mime-info/default.nix b/pkgs/data/misc/shared-mime-info/default.nix
index 6952d2da6bad..6569efa2cde6 100644
--- a/pkgs/data/misc/shared-mime-info/default.nix
+++ b/pkgs/data/misc/shared-mime-info/default.nix
@@ -20,6 +20,6 @@ stdenv.mkDerivation {
     homepage = http://freedesktop.org/wiki/Software/shared-mime-info;
     license = licenses.gpl2Plus;
     platforms = platforms.unix;
-    maintainers = [ maintainers.mimadrid ];
+    maintainers = [ maintainers.mimame ];
   };
 }
diff --git a/pkgs/development/libraries/science/biology/htslib/default.nix b/pkgs/development/libraries/science/biology/htslib/default.nix
index 367fc635c8b9..0b13696ad5f8 100644
--- a/pkgs/development/libraries/science/biology/htslib/default.nix
+++ b/pkgs/development/libraries/science/biology/htslib/default.nix
@@ -31,6 +31,6 @@ stdenv.mkDerivation rec {
     license = licenses.mit;
     homepage = http://www.htslib.org/;
     platforms = platforms.unix;
-    maintainers = [ maintainers.mimadrid ];
+    maintainers = [ maintainers.mimame ];
   };
 }
diff --git a/pkgs/development/tools/misc/universal-ctags/default.nix b/pkgs/development/tools/misc/universal-ctags/default.nix
index bad3ecd92413..47aa49178141 100644
--- a/pkgs/development/tools/misc/universal-ctags/default.nix
+++ b/pkgs/development/tools/misc/universal-ctags/default.nix
@@ -42,6 +42,6 @@ stdenv.mkDerivation {
     platforms = platforms.unix;
     # universal-ctags is preferred over emacs's ctags
     priority = 1;
-    maintainers = [ maintainers.mimadrid ];
+    maintainers = [ maintainers.mimame ];
   };
 }
diff --git a/pkgs/games/klavaro/default.nix b/pkgs/games/klavaro/default.nix
index e2a4cff291ba..f58f86cd8fba 100644
--- a/pkgs/games/klavaro/default.nix
+++ b/pkgs/games/klavaro/default.nix
@@ -25,6 +25,6 @@ stdenv.mkDerivation rec {
     homepage = http://klavaro.sourceforge.net/;
     license = stdenv.lib.licenses.gpl3Plus;
     platforms = stdenv.lib.platforms.linux;
-    maintainers = [stdenv.lib.maintainers.mimadrid];
+    maintainers = [stdenv.lib.maintainers.mimame];
   };
 }

From a5d5133e9c7ad37b161ecde4d96f6beb80a0d5f5 Mon Sep 17 00:00:00 2001
From: Lily Ballard <lily@sb.org>
Date: Sat, 14 Sep 2019 03:17:05 -0700
Subject: [PATCH 121/152] jazzy: 0.10.0 -> 0.11.0 (#68766)

* gem-config: fix sassc on darwin

By default the sassc gem compiles with LTO, but LTO is currently broken
on darwin.

* jazzy: 0.10.0 -> 0.11.0
---
 .../ruby-modules/gem-config/default.nix       |  5 +-
 pkgs/development/tools/jazzy/Gemfile.lock     | 32 +++-----
 pkgs/development/tools/jazzy/gemset.nix       | 80 +++++++------------
 3 files changed, 44 insertions(+), 73 deletions(-)

diff --git a/pkgs/development/ruby-modules/gem-config/default.nix b/pkgs/development/ruby-modules/gem-config/default.nix
index e9f57d2b85fb..a03e40e8097c 100644
--- a/pkgs/development/ruby-modules/gem-config/default.nix
+++ b/pkgs/development/ruby-modules/gem-config/default.nix
@@ -507,7 +507,10 @@ in
       substituteInPlace lib/sassc/native.rb \
         --replace 'gem_root = spec.gem_dir' 'gem_root = File.join(__dir__, "../../")'
     '';
-  };
+  } // (if stdenv.isDarwin then {
+    # https://github.com/NixOS/nixpkgs/issues/19098
+    buildFlags = "--disable-lto";
+  } else {});
 
   scrypt = attrs:
     if stdenv.isDarwin then {
diff --git a/pkgs/development/tools/jazzy/Gemfile.lock b/pkgs/development/tools/jazzy/Gemfile.lock
index fbfba32814bf..45b6a14eb083 100644
--- a/pkgs/development/tools/jazzy/Gemfile.lock
+++ b/pkgs/development/tools/jazzy/Gemfile.lock
@@ -1,18 +1,18 @@
 GEM
   remote: https://rubygems.org/
   specs:
-    CFPropertyList (3.0.0)
+    CFPropertyList (3.0.1)
     activesupport (4.2.11.1)
       i18n (~> 0.7)
       minitest (~> 5.1)
       thread_safe (~> 0.3, >= 0.3.4)
       tzinfo (~> 1.1)
     atomos (0.1.3)
-    claide (1.0.2)
-    cocoapods (1.7.4)
+    claide (1.0.3)
+    cocoapods (1.7.5)
       activesupport (>= 4.0.2, < 5)
       claide (>= 1.0.2, < 2.0)
-      cocoapods-core (= 1.7.4)
+      cocoapods-core (= 1.7.5)
       cocoapods-deintegrate (>= 1.0.3, < 2.0)
       cocoapods-downloader (>= 1.2.2, < 2.0)
       cocoapods-plugins (>= 1.0.0, < 2.0)
@@ -28,7 +28,7 @@ GEM
       nap (~> 1.0)
       ruby-macho (~> 1.4)
       xcodeproj (>= 1.10.0, < 2.0)
-    cocoapods-core (1.7.4)
+    cocoapods-core (1.7.5)
       activesupport (>= 4.0.2, < 6)
       fuzzy_match (~> 2.0.4)
       nap (~> 1.0)
@@ -38,7 +38,7 @@ GEM
       nap
     cocoapods-search (1.0.0)
     cocoapods-stats (1.1.0)
-    cocoapods-trunk (1.3.1)
+    cocoapods-trunk (1.4.0)
       nap (>= 0.8, < 2.0)
       netrc (~> 0.11)
     cocoapods-try (1.1.0)
@@ -51,13 +51,13 @@ GEM
     gh_inspector (1.1.3)
     i18n (0.9.5)
       concurrent-ruby (~> 1.0)
-    jazzy (0.10.0)
+    jazzy (0.11.0)
       cocoapods (~> 1.5)
       mustache (~> 1.1)
       open4
       redcarpet (~> 3.4)
       rouge (>= 2.0.6, < 4.0)
-      sass (~> 3.6)
+      sassc (~> 2.1)
       sqlite3 (~> 1.3)
       xcinvoke (~> 0.3.0)
     liferaft (0.0.6)
@@ -68,24 +68,18 @@ GEM
     nap (1.1.0)
     netrc (0.11.0)
     open4 (1.3.4)
-    rb-fsevent (0.10.3)
-    rb-inotify (0.10.0)
-      ffi (~> 1.0)
-    redcarpet (3.4.0)
-    rouge (3.6.0)
+    redcarpet (3.5.0)
+    rouge (3.10.0)
     ruby-macho (1.4.0)
-    sass (3.7.4)
-      sass-listen (~> 4.0.0)
-    sass-listen (4.0.0)
-      rb-fsevent (~> 0.9, >= 0.9.4)
-      rb-inotify (~> 0.9, >= 0.9.7)
+    sassc (2.2.0)
+      ffi (~> 1.9)
     sqlite3 (1.4.1)
     thread_safe (0.3.6)
     tzinfo (1.2.5)
       thread_safe (~> 0.1)
     xcinvoke (0.3.0)
       liferaft (~> 0.0.6)
-    xcodeproj (1.11.0)
+    xcodeproj (1.12.0)
       CFPropertyList (>= 2.3.3, < 4.0)
       atomos (~> 0.1.3)
       claide (>= 1.0.2, < 2.0)
diff --git a/pkgs/development/tools/jazzy/gemset.nix b/pkgs/development/tools/jazzy/gemset.nix
index ae544229a509..dada7f430739 100644
--- a/pkgs/development/tools/jazzy/gemset.nix
+++ b/pkgs/development/tools/jazzy/gemset.nix
@@ -25,18 +25,20 @@
     platforms = [];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0ykjag3k5msz3sf1j91rb55da2xh596y06m3a4yl79fiy2id0w9z";
+      sha256 = "0fr8sdzs2q1969zqh790w223hjidlwx4hfm4c91gj0va5j5pv3n8";
       type = "gem";
     };
-    version = "3.0.0";
+    version = "3.0.1";
   };
   claide = {
+    groups = ["default"];
+    platforms = [];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0az54rp691hc42yl1xyix2cxv58byhaaf4gxbpghvvq29l476rzc";
+      sha256 = "0kasxsms24fgcdsq680nz99d5lazl9rmz1qkil2y5gbbssx89g0z";
       type = "gem";
     };
-    version = "1.0.2";
+    version = "1.0.3";
   };
   cocoapods = {
     dependencies = ["activesupport" "claide" "cocoapods-core" "cocoapods-deintegrate" "cocoapods-downloader" "cocoapods-plugins" "cocoapods-search" "cocoapods-stats" "cocoapods-trunk" "cocoapods-try" "colored2" "escape" "fourflusher" "gh_inspector" "molinillo" "nap" "ruby-macho" "xcodeproj"];
@@ -44,10 +46,10 @@
     platforms = [];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "1h0cnrxh5k61yfh3f3kdx67gwfkvnvaqgsmwbmqpl7ffbpsg5gsc";
+      sha256 = "02gnm6l7f3pxmy7bqns0dhxmanlqp01hkpvng5cxryww17zrq2qz";
       type = "gem";
     };
-    version = "1.7.4";
+    version = "1.7.5";
   };
   cocoapods-core = {
     dependencies = ["activesupport" "fuzzy_match" "nap"];
@@ -55,10 +57,10 @@
     platforms = [];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0xbpaisml77q9k5bk5f7hfkzmnjymzczinvhgim34nvwd00rd30c";
+      sha256 = "1i53x5lhlvyirls2ch45x9wsrfqk7s3zp85lbnwps9abimxj4nh4";
       type = "gem";
     };
-    version = "1.7.4";
+    version = "1.7.5";
   };
   cocoapods-deintegrate = {
     groups = ["default"];
@@ -113,10 +115,10 @@
     platforms = [];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "1plssgabdv6hcaq1c3gf43kf1d2prx883q8lzdr6chi5byzzs3yl";
+      sha256 = "1m0p27aij7d0n0b8h7nvyv3q3prcpwisbj7sla0fp2hvn4lqarl5";
       type = "gem";
     };
-    version = "1.3.1";
+    version = "1.4.0";
   };
   cocoapods-try = {
     source = {
@@ -202,15 +204,15 @@
     version = "0.9.5";
   };
   jazzy = {
-    dependencies = ["cocoapods" "mustache" "open4" "redcarpet" "rouge" "sass" "sqlite3" "xcinvoke"];
+    dependencies = ["cocoapods" "mustache" "open4" "redcarpet" "rouge" "sassc" "sqlite3" "xcinvoke"];
     groups = ["default"];
     platforms = [];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0sljk5v4823h7kzf0yag7f1vf6sahpqip62xngvrhm3il9dx3j72";
+      sha256 = "0cwsmijhb845lrkwq1gxwa6a698vp47gdxcpav30dghrf1ikyzqm";
       type = "gem";
     };
-    version = "0.10.0";
+    version = "0.11.0";
   };
   liferaft = {
     source = {
@@ -284,44 +286,25 @@
     };
     version = "1.3.4";
   };
-  rb-fsevent = {
-    groups = ["default"];
-    platforms = [];
-    source = {
-      remotes = ["https://rubygems.org"];
-      sha256 = "1lm1k7wpz69jx7jrc92w3ggczkjyjbfziq5mg62vjnxmzs383xx8";
-      type = "gem";
-    };
-    version = "0.10.3";
-  };
-  rb-inotify = {
-    dependencies = ["ffi"];
-    groups = ["default"];
-    platforms = [];
-    source = {
-      remotes = ["https://rubygems.org"];
-      sha256 = "1fs7hxm9g6ywv2yih83b879klhc4fs8i0p9166z795qmd77dk0a4";
-      type = "gem";
-    };
-    version = "0.10.0";
-  };
   redcarpet = {
+    groups = ["default"];
+    platforms = [];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0h9qz2hik4s9knpmbwrzb3jcp3vc5vygp9ya8lcpl7f1l9khmcd7";
+      sha256 = "0skcyx1h8b5ms0rp2zm3ql6g322b8c1adnkwkqyv7z3kypb4bm7k";
       type = "gem";
     };
-    version = "3.4.0";
+    version = "3.5.0";
   };
   rouge = {
     groups = ["default"];
     platforms = [];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0bxjfg6bgc6zpczc5nsmpd6406b97fg0hldl968rgxkz1m6hblda";
+      sha256 = "07j29vbgsi9v7kpx4lqpmh0hx59i420jig73dy46wx3id1i7vdqz";
       type = "gem";
     };
-    version = "3.6.0";
+    version = "3.10.0";
   };
   ruby-macho = {
     groups = ["default"];
@@ -333,25 +316,16 @@
     };
     version = "1.4.0";
   };
-  sass = {
-    dependencies = ["sass-listen"];
+  sassc = {
+    dependencies = ["ffi"];
     groups = ["default"];
     platforms = [];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0p95lhs0jza5l7hqci1isflxakz83xkj97lkvxl919is0lwhv2w0";
+      sha256 = "178iflma5z4qk2lfzlxk8kh942skj45q6v6xwllkqng9xbjlyzkf";
       type = "gem";
     };
-    version = "3.7.4";
-  };
-  sass-listen = {
-    dependencies = ["rb-fsevent" "rb-inotify"];
-    source = {
-      remotes = ["https://rubygems.org"];
-      sha256 = "0xw3q46cmahkgyldid5hwyiwacp590zj2vmswlll68ryvmvcp7df";
-      type = "gem";
-    };
-    version = "4.0.0";
+    version = "2.2.0";
   };
   sqlite3 = {
     groups = ["default"];
@@ -397,9 +371,9 @@
     platforms = [];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "1h73ilwyjwyyhj761an3pmicllw50514gxb6b1r4z4klc9rzxw4j";
+      sha256 = "162gwhrl7ppj6hlmnpp1scvy1ylcv5xqk51826v075sckdqjp8c8";
       type = "gem";
     };
-    version = "1.11.0";
+    version = "1.12.0";
   };
 }
\ No newline at end of file

From a345623f2b05ffcc0c07f9fde5d3348cc7e5ec82 Mon Sep 17 00:00:00 2001
From: Robin Gloster <mail@glob.in>
Date: Sat, 14 Sep 2019 12:18:36 +0200
Subject: [PATCH 122/152] spidermonkey_1_8_5: fix build with gcc8

closes #68765
closes #68763
---
 pkgs/development/interpreters/spidermonkey/1.8.5.nix | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/pkgs/development/interpreters/spidermonkey/1.8.5.nix b/pkgs/development/interpreters/spidermonkey/1.8.5.nix
index 8f9477c4c4ac..97d2b67372af 100644
--- a/pkgs/development/interpreters/spidermonkey/1.8.5.nix
+++ b/pkgs/development/interpreters/spidermonkey/1.8.5.nix
@@ -37,6 +37,12 @@ stdenv.mkDerivation {
 
   patchFlags = "-p3";
 
+  # fixes build on gcc8
+  postPatch = ''
+    substituteInPlace ./methodjit/MethodJIT.cpp \
+      --replace 'asm volatile' 'asm'
+  '';
+
   # On the Sheevaplug, ARM, its nanojit thing segfaults in japi-tests in
   # "make check". Disabling tracejit makes it work, but then it needs the
   # patch findvanilla.patch do disable a checker about allocator safety. In case

From ce37a040c262aed26e9c6fd63ba527ba1bc028cc Mon Sep 17 00:00:00 2001
From: Maximilian Bosch <maximilian@mbosch.me>
Date: Sat, 14 Sep 2019 12:58:42 +0200
Subject: [PATCH 123/152] nixos/hydra: incorporate upstream changes and update
 test

During the last update, `hydra-notify` was rewritten as a daemon which
listens to postgresql notifications for each build[1]. The module
uses the `hydra-notify.service` unit from upstream's Hydra module and
the VM test ensures that email notifications are sent properly.

Also updated `hydra-init.service` to install `pg_trgm` on a local
database if needed[2].

[1] https://github.com/NixOS/hydra/commit/c7861b85c4c3cc974b27147bbf3cc258b9fe9cc3
[2] https://github.com/NixOS/hydra/commit/8a0a5ec3a3200d4f4d4d38f87d0afdb49f092b39
---
 .../continuous-integration/hydra/default.nix  | 20 +++++++++++++++++++
 nixos/tests/hydra/create-trivial-project.sh   |  2 ++
 nixos/tests/hydra/default.nix                 | 17 +++++++++++-----
 3 files changed, 34 insertions(+), 5 deletions(-)

diff --git a/nixos/modules/services/continuous-integration/hydra/default.nix b/nixos/modules/services/continuous-integration/hydra/default.nix
index 500acb485620..2da10a9a5e2a 100644
--- a/nixos/modules/services/continuous-integration/hydra/default.nix
+++ b/nixos/modules/services/continuous-integration/hydra/default.nix
@@ -275,6 +275,7 @@ in
               ${pkgs.sudo}/bin/sudo -u ${config.services.postgresql.superUser} ${config.services.postgresql.package}/bin/createdb -O hydra hydra
               touch ${baseDir}/.db-created
             fi
+            echo "create extension if not exists pg_trgm" | ${pkgs.sudo}/bin/sudo -u ${config.services.postgresql.superUser} -- ${config.services.postgresql.package}/bin/psql hydra
           ''}
 
           if [ ! -e ${cfg.gcRootsDir} ]; then
@@ -379,6 +380,23 @@ in
           };
       };
 
+    systemd.services.hydra-notify =
+      { wantedBy = [ "multi-user.target" ];
+        requires = [ "hydra-init.service" ];
+        after = [ "hydra-init.service" ];
+        restartTriggers = [ hydraConf ];
+        environment = env // {
+          PGPASSFILE = "${baseDir}/pgpass-queue-runner";
+        };
+        serviceConfig =
+          { ExecStart = "@${cfg.package}/bin/hydra-notify hydra-notify";
+            # FIXME: run this under a less privileged user?
+            User = "hydra-queue-runner";
+            Restart = "always";
+            RestartSec = 5;
+          };
+      };
+
     # If there is less than a certain amount of free disk space, stop
     # the queue/evaluator to prevent builds from failing or aborting.
     systemd.services.hydra-check-space =
@@ -416,6 +434,8 @@ in
         hydra-users hydra-queue-runner hydra
         hydra-users hydra-www hydra
         hydra-users root hydra
+        # The postgres user is used to create the pg_trgm extension for the hydra database
+        hydra-users postgres postgres
       '';
 
     services.postgresql.authentication = optionalString haveLocalDB
diff --git a/nixos/tests/hydra/create-trivial-project.sh b/nixos/tests/hydra/create-trivial-project.sh
index 39122c9b473a..5aae2d5bf90d 100755
--- a/nixos/tests/hydra/create-trivial-project.sh
+++ b/nixos/tests/hydra/create-trivial-project.sh
@@ -44,6 +44,8 @@ cat >data.json <<EOF
   "enabled": "1",
   "visible": "1",
   "keepnr": "1",
+  "enableemail": true,
+  "emailoverride": "hydra@localhost",
   "nixexprinput": "trivial",
   "nixexprpath": "trivial.nix",
   "inputs": {
diff --git a/nixos/tests/hydra/default.nix b/nixos/tests/hydra/default.nix
index 76000450921a..6ca05a2c7797 100644
--- a/nixos/tests/hydra/default.nix
+++ b/nixos/tests/hydra/default.nix
@@ -55,7 +55,12 @@ let
               notificationSender = "example@example.com";
 
               package = pkgs.hydra.override { inherit nix; };
+
+              extraConfig = ''
+                email_notification = 1
+              '';
             };
+            services.postfix.enable = true;
             nix = {
               buildMachines = [{
                 hostName = "localhost";
@@ -70,12 +75,12 @@ let
           # let the system boot up
           $machine->waitForUnit("multi-user.target");
           # test whether the database is running
-          $machine->succeed("systemctl status postgresql.service");
+          $machine->waitForUnit("postgresql.service");
           # test whether the actual hydra daemons are running
-          $machine->succeed("systemctl status hydra-queue-runner.service");
-          $machine->succeed("systemctl status hydra-init.service");
-          $machine->succeed("systemctl status hydra-evaluator.service");
-          $machine->succeed("systemctl status hydra-send-stats.service");
+          $machine->waitForUnit("hydra-init.service");
+          $machine->requireActiveUnit("hydra-queue-runner.service");
+          $machine->requireActiveUnit("hydra-evaluator.service");
+          $machine->requireActiveUnit("hydra-notify.service");
 
           $machine->succeed("hydra-create-user admin --role admin --password admin");
 
@@ -86,6 +91,8 @@ let
           $machine->succeed("create-trivial-project.sh");
 
           $machine->waitUntilSucceeds('curl -L -s http://localhost:3000/build/1 -H "Accept: application/json" |  jq .buildstatus | xargs test 0 -eq');
+
+          $machine->waitUntilSucceeds('journalctl -eu hydra-notify.service -o cat | grep -q "sending mail notification to hydra@localhost"');
         '';
       })));
 

From 72ec538d2c76180a8d0f79a13b88794d6efe06a7 Mon Sep 17 00:00:00 2001
From: Maximilian Bosch <maximilian@mbosch.me>
Date: Sat, 14 Sep 2019 13:42:06 +0200
Subject: [PATCH 124/152] python3Packages.dlib: fix build

The CMake configuring is done in the `setup.py` and doesn't need to be
done by the setup hook. This broke the build as the setup-hook switches
into `source/build` which doesn't have a `setup.py`.

Relying on the setup script from upstream fixes the issue.

ZHF #68361
---
 pkgs/development/python-modules/dlib/default.nix | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/pkgs/development/python-modules/dlib/default.nix b/pkgs/development/python-modules/dlib/default.nix
index d9b3bb93264e..a57d83075513 100644
--- a/pkgs/development/python-modules/dlib/default.nix
+++ b/pkgs/development/python-modules/dlib/default.nix
@@ -21,4 +21,7 @@ buildPythonPackage {
   '';
 
   checkInputs = [ pytest more-itertools ];
+
+  enableParallelBuilding = true;
+  dontUseCmakeConfigure = true;
 }

From 42243e46b1c0ee01b6cc52897e495d069c0486ce Mon Sep 17 00:00:00 2001
From: Daniel Schaefer <git@danielschaefer.me>
Date: Sat, 14 Sep 2019 13:34:48 +0200
Subject: [PATCH 125/152] twister: 0.9.34 -> 2019-08-19

---
 .../networking/p2p/twister/default.nix        | 19 +++++++------------
 pkgs/top-level/all-packages.nix               |  4 +---
 2 files changed, 8 insertions(+), 15 deletions(-)

diff --git a/pkgs/applications/networking/p2p/twister/default.nix b/pkgs/applications/networking/p2p/twister/default.nix
index 647b708e1021..30491470392a 100644
--- a/pkgs/applications/networking/p2p/twister/default.nix
+++ b/pkgs/applications/networking/p2p/twister/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, fetchpatch, autoconf, automake, libtool, pkgconfig, python2
+{ stdenv, fetchFromGitHub, fetchpatch, autoconf, automake, libtool, pkgconfig, python2
 , boost, db, openssl, geoip, libiconv, miniupnpc
 , srcOnly, fetchgit
 }:
@@ -17,12 +17,13 @@ let
 
 in stdenv.mkDerivation rec {
   pname = "twister";
-  version = "0.9.34";
+  version = "2019-08-19";
 
-  src = fetchurl {
-    url = "https://github.com/miguelfreitas/twister-core/"
-        + "archive/v${version}.tar.gz";
-    sha256 = "1bi8libivd9y2bn9fc7vbc5q0jnal0pykpzgri6anqaww22y58jq";
+  src = fetchFromGitHub {
+    owner = "miguelfreitas";
+    repo = "twister-core";
+    rev = "31faf3f63e461ea0a9b23081567a4a552cf06873";
+    sha256 = "0xh1lgnl9nd86jr0mp7m8bkd7r5j4d6chd0y73h2xv4aq5sld0sp";
   };
 
   configureFlags = [
@@ -40,12 +41,6 @@ in stdenv.mkDerivation rec {
     boostPython db openssl geoip miniupnpc libiconv
   ];
 
-  patches = stdenv.lib.singleton (fetchpatch {
-    url = "https://github.com/miguelfreitas/twister-core/commit/"
-        + "dd4f5a176958ea6ed855dc3fcef79680c1c0c92c.patch";
-    sha256 = "06fgmqnjyl83civ3ixiq673k8zjgm8n2w4w46nsh810nprqim8s6";
-  });
-
   postPatch = ''
     sed -i -e '/-htmldir/s|(default: [^)]*)|(default: ${twisterHTML})|' \
       src/init.cpp
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index bd67fe85526b..3ae8c4726488 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -20872,9 +20872,7 @@ in
 
   tuxguitar = callPackage ../applications/editors/music/tuxguitar { };
 
-  twister = callPackage ../applications/networking/p2p/twister {
-    boost = boost160;
-  };
+  twister = callPackage ../applications/networking/p2p/twister { };
 
   twmn = libsForQt5.callPackage ../applications/misc/twmn { };
 

From ab8bfa7d68494405f59b2ccdee3edecfdd334418 Mon Sep 17 00:00:00 2001
From: rliang <ricardoliang@gmail.com>
Date: Fri, 13 Sep 2019 18:48:43 -0300
Subject: [PATCH 126/152] vimPlugins: update

---
 pkgs/misc/vim-plugins/generated.nix    | 205 ++++++++++++++++---------
 pkgs/misc/vim-plugins/vim-plugin-names |   5 +
 2 files changed, 135 insertions(+), 75 deletions(-)

diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix
index f3b46348e75c..812fbfab98d7 100644
--- a/pkgs/misc/vim-plugins/generated.nix
+++ b/pkgs/misc/vim-plugins/generated.nix
@@ -61,12 +61,12 @@ let
 
   ale = buildVimPluginFrom2Nix {
     pname = "ale";
-    version = "2019-09-01";
+    version = "2019-09-12";
     src = fetchFromGitHub {
       owner = "w0rp";
       repo = "ale";
-      rev = "6e18c03d80c323e740f87103fc05955b5c61b54e";
-      sha256 = "0jgqmliy48fqdhc1lnsbvkgg24z85n7dv8z6k6xxnilcsrhfzds2";
+      rev = "61cfb3fefb0ebd8654be452046bd2ba24025311f";
+      sha256 = "11i5jr5zgvkl7wr99jjldyypbd5xsnyj8q9j379gl2xk5brjwbaf";
     };
   };
 
@@ -292,34 +292,34 @@ let
 
   coc-eslint = buildVimPluginFrom2Nix {
     pname = "coc-eslint";
-    version = "2019-06-17";
+    version = "2019-09-10";
     src = fetchFromGitHub {
       owner = "neoclide";
       repo = "coc-eslint";
-      rev = "c8f1639146748b46f871144ed471c44741492c97";
-      sha256 = "0adz0wv0kmyhgz5ahqrdkp8lp2nrxh06b6rri2z7jbgplyksa0qc";
+      rev = "943f22365e2b50e7372058c39e5b85d4d5254beb";
+      sha256 = "1p9gn5y9sk7jl6j1nfxhqk1h1xs1lhq2cg5pbilwsb42q5dzr79s";
     };
   };
 
   coc-git = buildVimPluginFrom2Nix {
     pname = "coc-git";
-    version = "2019-09-09";
+    version = "2019-09-10";
     src = fetchFromGitHub {
       owner = "neoclide";
       repo = "coc-git";
-      rev = "67d6df228ffca7e6247139184fcb53003ccf7810";
-      sha256 = "1xmm07k9c3kzyx4wrkamdpfh1pykihlrs35qcgy8wgqr9msqj9bq";
+      rev = "c463de323cb7f162747e545bff694d6293a9be60";
+      sha256 = "15r8gwsk69gg1p68jgi3gw0m29lbfs7iddcmhgr5qkrvk8rhhi1j";
     };
   };
 
   coc-go = buildVimPluginFrom2Nix {
     pname = "coc-go";
-    version = "2019-09-07";
+    version = "2019-09-13";
     src = fetchFromGitHub {
       owner = "josa42";
       repo = "coc-go";
-      rev = "16005f9249196c54cd85f0407152d04a4c487b30";
-      sha256 = "06jky64f2l4j5sn4v8ij5594afc85d4gk2mxd315j5b16sy661l3";
+      rev = "059f6ecae0849024d299d9e744622d439c73ddca";
+      sha256 = "0n9ffsk9qds5ap3049kw05v167ialhmix28mwygdxgzjvr9qpd4q";
     };
   };
 
@@ -380,12 +380,12 @@ let
 
   coc-json = buildVimPluginFrom2Nix {
     pname = "coc-json";
-    version = "2019-07-09";
+    version = "2019-09-12";
     src = fetchFromGitHub {
       owner = "neoclide";
       repo = "coc-json";
-      rev = "ed9743a6cfe1db5139e3a42f6aea01d3004be01b";
-      sha256 = "0h3dwcv931xs5y87kqyq2my5z85xv904cbmr41bj8mn1myw8chsf";
+      rev = "ad75187c954f55ec3f92ca9ac5d9f77347b0bbfe";
+      sha256 = "0hwv394498qz6bb5zl2i57d18dbl4faxmh3g2d8mfggmx16pv41n";
     };
   };
 
@@ -413,23 +413,23 @@ let
 
   coc-pairs = buildVimPluginFrom2Nix {
     pname = "coc-pairs";
-    version = "2019-09-09";
+    version = "2019-09-10";
     src = fetchFromGitHub {
       owner = "neoclide";
       repo = "coc-pairs";
-      rev = "318e8123b11d231ceb48c0e7dd9864881115d873";
-      sha256 = "0r9cnqn6mr6b9g7ahjhfxr7s82a6wcwxhwm22s6vparaa45k4mk0";
+      rev = "26b1be159c2f24d74c6f175e91b6a8fbd3868e9a";
+      sha256 = "16g2wz87l1pskn6ri71sdm1j5r4h8z1vjdg3ksqs6mz9x2vzy2zz";
     };
   };
 
   coc-prettier = buildVimPluginFrom2Nix {
     pname = "coc-prettier";
-    version = "2019-07-28";
+    version = "2019-09-10";
     src = fetchFromGitHub {
       owner = "neoclide";
       repo = "coc-prettier";
-      rev = "79ebb637c533dbddd774be8d87ff80b27650dcc9";
-      sha256 = "16ggli5ixxaa03f60j66my3zw64ciyi7pgqnf5i2k94yk35bi0d6";
+      rev = "b78dcb1000841a428d23d457ac93c190b98f7b35";
+      sha256 = "0krc9dnzglh8rff68xyp27qjdgmqhxvl94jy1x4asl5a5srzz7v7";
     };
   };
 
@@ -457,12 +457,12 @@ let
 
   coc-rls = buildVimPluginFrom2Nix {
     pname = "coc-rls";
-    version = "2019-07-13";
+    version = "2019-09-10";
     src = fetchFromGitHub {
       owner = "neoclide";
       repo = "coc-rls";
-      rev = "0c005a817016412e6fba56ab81d20a949c42fbd1";
-      sha256 = "0h5a1a9s9rarafmfy2i77rrsmg9393hdk53v3hfzs0f00q9qk7wn";
+      rev = "6d6cbb2768304bca987f83d23e7fe56b7fe66c2b";
+      sha256 = "18jz9qjxkb6626pnc5gmcfxq7yyyqnvalcllapsrk19ji6ykfi7k";
     };
   };
 
@@ -512,12 +512,12 @@ let
 
   coc-tabnine = buildVimPluginFrom2Nix {
     pname = "coc-tabnine";
-    version = "2019-08-23";
+    version = "2019-09-12";
     src = fetchFromGitHub {
       owner = "neoclide";
       repo = "coc-tabnine";
-      rev = "d6617d0ae2b2ba0f415961fed1ffc3827d06db54";
-      sha256 = "1drxhjr6yv4qja0z9pypq14lj18rkw0hpwcg0ji2fgiqrf2l9ywj";
+      rev = "cb787892b860a53fea65954b4afa32331ab17851";
+      sha256 = "0c7hk8alggvz837w48fqiz3d01z56pxg2qss13qpp01kvvw12np6";
     };
   };
 
@@ -890,12 +890,12 @@ let
 
   deoplete-lsp = buildVimPluginFrom2Nix {
     pname = "deoplete-lsp";
-    version = "2019-09-09";
+    version = "2019-09-11";
     src = fetchFromGitHub {
       owner = "Shougo";
       repo = "deoplete-lsp";
-      rev = "9e5ab5d5ea955711bce2a64535ec42d9e76aa3fe";
-      sha256 = "1552fr18drc8q7qha8gbfckp906fihx8xdpj7z7y0yiw20bc4kk3";
+      rev = "28b15222852a0668b25ce04b66302275ea8cd4c5";
+      sha256 = "05n1smyjlzzq428h5hfs0drifxwjbshc9csv8jx7yjwpm4gqy2md";
     };
   };
 
@@ -1035,12 +1035,12 @@ let
 
   falcon = buildVimPluginFrom2Nix {
     pname = "falcon";
-    version = "2019-09-09";
+    version = "2019-09-12";
     src = fetchFromGitHub {
       owner = "fenetikm";
       repo = "falcon";
-      rev = "96eace33dd16d553a9318f08209f108ec69c5cd7";
-      sha256 = "09q9rk69xrj30knfdq5s4xxmiwnazs1l7lrsqwxpn0ggq8ryk5qd";
+      rev = "3ba858de194fc53b301fb640ab71b4263bc66175";
+      sha256 = "1vbzlq7k2l0yqhdcnldkliwyzqskf1bqjgxl2l4c0nj8rcjm5bw3";
     };
   };
 
@@ -1774,12 +1774,12 @@ let
 
   neoterm = buildVimPluginFrom2Nix {
     pname = "neoterm";
-    version = "2019-09-01";
+    version = "2019-09-12";
     src = fetchFromGitHub {
       owner = "kassio";
       repo = "neoterm";
-      rev = "f53fa5177c01180ea538290657721e1accbb02fe";
-      sha256 = "0v162hpl881dhb61vkyi4bvny5zn74pknlyh1liyhw6jy5hgc9b8";
+      rev = "511f6c64ca2530f4356e0b301ee0f34b956ac7aa";
+      sha256 = "1645q70jg81jy7gxdd8kr7i5pgkr2k7i71ijk4k23lxj0yd4fsim";
     };
   };
 
@@ -1807,23 +1807,23 @@ let
 
   nerdcommenter = buildVimPluginFrom2Nix {
     pname = "nerdcommenter";
-    version = "2019-08-27";
+    version = "2019-09-13";
     src = fetchFromGitHub {
       owner = "scrooloose";
       repo = "nerdcommenter";
-      rev = "2504a3d84e97be144019ef184f0c2aed42f3152d";
-      sha256 = "0djfm8k4yqaycydg4hpvnapyh2d5k0r3alhlk09rj1arsw2kzh38";
+      rev = "8228c7b0a7aa46b7846f7bf21bcb89ce24b9c20e";
+      sha256 = "098alydvc9calcxkv77c8wkxw41p2az2dk70bx279ngz648i150c";
     };
   };
 
   nerdtree = buildVimPluginFrom2Nix {
     pname = "nerdtree";
-    version = "2019-09-09";
+    version = "2019-09-13";
     src = fetchFromGitHub {
       owner = "scrooloose";
       repo = "nerdtree";
-      rev = "51fc75efdb8ac58c853492c3f61d854f65ed78ec";
-      sha256 = "098g4qq3h8nklynj4qnj02f6ivw10q07c69ssdrhgjwilpgv4nrk";
+      rev = "60ec10b477eefc81eeafafa2a8c1b00046ee48fb";
+      sha256 = "1l9lz56cdkifp4arf05z298jg0yfvr2wvfbnzaff62yc38n4hb4b";
     };
   };
 
@@ -2192,12 +2192,12 @@ let
 
   semshi = buildVimPluginFrom2Nix {
     pname = "semshi";
-    version = "2019-07-02";
+    version = "2019-09-12";
     src = fetchFromGitHub {
       owner = "numirias";
       repo = "semshi";
-      rev = "527ebc5a0465dbf6313a791c1c78a37420114799";
-      sha256 = "0ys1hnvk5mq4cigrrqx70ivlgwc7kblvbv3ncqlqihvxs2hhan4i";
+      rev = "741916c472adc40f82d191ec48e668e88251e626";
+      sha256 = "0ld4fk8a8k2mf8q32zjq3lbb8nhdg214n5kp221z0vw2a72zgkjn";
     };
   };
 
@@ -2830,12 +2830,12 @@ let
 
   vim-airline = buildVimPluginFrom2Nix {
     pname = "vim-airline";
-    version = "2019-09-09";
+    version = "2019-09-11";
     src = fetchFromGitHub {
       owner = "vim-airline";
       repo = "vim-airline";
-      rev = "63d8764f9d19def6d279b91e690ac2aa5662828d";
-      sha256 = "0sxjw1dmidw242m1ma607g957hz2w080ln4m4ac90wi1qssp8132";
+      rev = "89d1d43165c8ef6c029ee0e9590a0d67978a7c97";
+      sha256 = "0nkq6a5r2dx0jqp6ikbzbrvlfgpcn28y5l9b41bfpxkqplh03bhn";
     };
   };
 
@@ -3246,6 +3246,17 @@ let
     };
   };
 
+  vim-exchange = buildVimPluginFrom2Nix {
+    pname = "vim-exchange";
+    version = "2017-01-27";
+    src = fetchFromGitHub {
+      owner = "tommcdo";
+      repo = "vim-exchange";
+      rev = "05d82b87711c6c8b9b7389bfb91c24bc4f62aa87";
+      sha256 = "09fa156y8pxpzdbngifa7yzg1vjg1fjsgp1h9inj818zbig8mamb";
+    };
+  };
+
   vim-expand-region = buildVimPluginFrom2Nix {
     pname = "vim-expand-region";
     version = "2013-08-19";
@@ -3336,12 +3347,12 @@ let
 
   vim-fugitive = buildVimPluginFrom2Nix {
     pname = "vim-fugitive";
-    version = "2019-09-09";
+    version = "2019-09-11";
     src = fetchFromGitHub {
       owner = "tpope";
       repo = "vim-fugitive";
-      rev = "35f1095f9b3ce70768bdd75dae76437cfa69dd02";
-      sha256 = "0d806k1prgsa0mgc779p3ngqjyd8shrf2i18xi58vsndrvsgn96v";
+      rev = "26f6037de68254376cd062286aeeaa7db804a973";
+      sha256 = "0cza5v99493llr02all1zwjy3gk19hypngk6j3kcrg7530c9sq6n";
     };
   };
 
@@ -3413,12 +3424,12 @@ let
 
   vim-go = buildVimPluginFrom2Nix {
     pname = "vim-go";
-    version = "2019-09-08";
+    version = "2019-09-13";
     src = fetchFromGitHub {
       owner = "fatih";
       repo = "vim-go";
-      rev = "925d29a73db14133d11361792a2e0393e1e2b457";
-      sha256 = "167s9dadk1nl0kw14p0mq7pkwhxg9xb5gkmhqh96rpz1z2730jw7";
+      rev = "041ca9669bbbe4a50b382d8972a7191edf873f55";
+      sha256 = "1q3sca1gpxc7iqdk6wkdzndwpf8i8z69is4jwmnhr0sk0jrjby6q";
     };
   };
 
@@ -3929,6 +3940,17 @@ let
     };
   };
 
+  vim-mucomplete = buildVimPluginFrom2Nix {
+    pname = "vim-mucomplete";
+    version = "2019-07-30";
+    src = fetchFromGitHub {
+      owner = "lifepillar";
+      repo = "vim-mucomplete";
+      rev = "eede692d8e8ee847de5c59d760f77fa27ea5ff47";
+      sha256 = "0c8rjqz0mzi9c69qjd9arljkwdckjp8x5d3ks570xhlcmp17qzn8";
+    };
+  };
+
   vim-multiple-cursors = buildVimPluginFrom2Nix {
     pname = "vim-multiple-cursors";
     version = "2019-07-11";
@@ -3962,6 +3984,17 @@ let
     };
   };
 
+  vim-ninja-feet = buildVimPluginFrom2Nix {
+    pname = "vim-ninja-feet";
+    version = "2019-05-12";
+    src = fetchFromGitHub {
+      owner = "tommcdo";
+      repo = "vim-ninja-feet";
+      rev = "5b48f97bf4865a25f5f4568c45cdfd08f946ec4f";
+      sha256 = "1i3n5nlwyg65k0f0qrimbfs67l2xx39cqp4gyrycw4vzp6hs0lsc";
+    };
+  };
+
   vim-nix = buildVimPluginFrom2Nix {
     pname = "vim-nix";
     version = "2019-06-03";
@@ -4030,12 +4063,12 @@ let
 
   vim-orgmode = buildVimPluginFrom2Nix {
     pname = "vim-orgmode";
-    version = "2019-08-05";
+    version = "2019-09-13";
     src = fetchFromGitHub {
       owner = "jceb";
       repo = "vim-orgmode";
-      rev = "10b5ddf57f9416ed5a33419e1095dba7d239b297";
-      sha256 = "1hik7bkk1rfxwwn77w1p7c6m1dz7ifpvnnfs8yizhlp9rgs0wjch";
+      rev = "2848ab2db5a2862d43d77acee04faf981f643dd0";
+      sha256 = "06cgb7zb239yk3rkym3nxy26ihm9b2ibqyvjyjgj43w1bm6jfwg5";
     };
   };
 
@@ -4151,12 +4184,12 @@ let
 
   vim-polyglot = buildVimPluginFrom2Nix {
     pname = "vim-polyglot";
-    version = "2019-09-06";
+    version = "2019-09-12";
     src = fetchFromGitHub {
       owner = "sheerun";
       repo = "vim-polyglot";
-      rev = "fbc2af9e820d85e17cd08023f4dcc66545735d58";
-      sha256 = "03lrnrhhhxmz5dbbsxhnnrff8myc21qrxsskfd2k6yh1hr9wwa5p";
+      rev = "4f3df59be709bf0d5c5c67dc804fde49abdc2700";
+      sha256 = "0rknm6bj75ax2a81bkw96nqakn2gb1mjfb6lgg8kwvcjzddfvmb9";
     };
   };
 
@@ -4259,6 +4292,17 @@ let
     };
   };
 
+  vim-rooter = buildVimPluginFrom2Nix {
+    pname = "vim-rooter";
+    version = "2019-05-18";
+    src = fetchFromGitHub {
+      owner = "airblade";
+      repo = "vim-rooter";
+      rev = "eef98131fef264d0f4e4f95c42e0de476c78009c";
+      sha256 = "144wwvi295q387w6cy9mv2inzla8ngd735gmf65lf33llp8hga59";
+    };
+  };
+
   vim-rsi = buildVimPluginFrom2Nix {
     pname = "vim-rsi";
     version = "2019-03-15";
@@ -4415,12 +4459,12 @@ let
 
   vim-snippets = buildVimPluginFrom2Nix {
     pname = "vim-snippets";
-    version = "2019-09-03";
+    version = "2019-09-13";
     src = fetchFromGitHub {
       owner = "honza";
       repo = "vim-snippets";
-      rev = "55b29ff83e9f5b43a138fb42100be6d7b5777d0d";
-      sha256 = "0zkxmj3l1jj1q9qigm13xksc7f3a7n7ik5yxgn4gxdpi9z79as4d";
+      rev = "2221222df8cbc1a99c29f3e55a7c340f4d16b1ff";
+      sha256 = "0vjgxxg7aq5j7lxc0pn0fral5gjb4fpc42442q8mkik6cpkd92h0";
     };
   };
 
@@ -4512,6 +4556,17 @@ let
     };
   };
 
+  vim-swap = buildVimPluginFrom2Nix {
+    pname = "vim-swap";
+    version = "2019-06-07";
+    src = fetchFromGitHub {
+      owner = "machakann";
+      repo = "vim-swap";
+      rev = "e52ff679c88f4aa7a7afe77fb42af78c93ed33c8";
+      sha256 = "0rqvxqqk961syawmyc2qdfb4w9ilb1r3mxxij2ja1jbhl1f3w4vq";
+    };
+  };
+
   vim-SyntaxRange = buildVimPluginFrom2Nix {
     pname = "vim-SyntaxRange";
     version = "2018-03-09";
@@ -4723,12 +4778,12 @@ let
 
   vim-visual-multi = buildVimPluginFrom2Nix {
     pname = "vim-visual-multi";
-    version = "2019-09-01";
+    version = "2019-09-12";
     src = fetchFromGitHub {
       owner = "mg979";
       repo = "vim-visual-multi";
-      rev = "d55e496786f064c022861c944cf38562006a4e9a";
-      sha256 = "1c049z9qgbc0g80zvixz0cqglq2qcg2pfmzjvp4gg5yq4k27r25y";
+      rev = "6ff6e336ac3df959c8d0462be277b4fff8661421";
+      sha256 = "1drp53cvbflr6x94vy0f57fg9nb3kxlaxvrc5w71id4mv0pr7bb2";
     };
   };
 
@@ -4767,12 +4822,12 @@ let
 
   vim-watchdogs = buildVimPluginFrom2Nix {
     pname = "vim-watchdogs";
-    version = "2019-04-03";
+    version = "2019-09-09";
     src = fetchFromGitHub {
       owner = "osyo-manga";
       repo = "vim-watchdogs";
-      rev = "33d74aaeb1ef71512baff9eea20a42e06f4f0bc4";
-      sha256 = "0jkkrlw9x524vvsggq51z0yyvys75dv2h21ijxzdqni49kf4vyhk";
+      rev = "8ee2af37095af08376ba2409da152c2a36a4ee90";
+      sha256 = "1hvgqdcnnz09afbas5brwls2sifs8y78jmq44ldgsjny9l445df4";
     };
   };
 
@@ -4877,12 +4932,12 @@ let
 
   vimtex = buildVimPluginFrom2Nix {
     pname = "vimtex";
-    version = "2019-09-09";
+    version = "2019-09-13";
     src = fetchFromGitHub {
       owner = "lervag";
       repo = "vimtex";
-      rev = "cb90d583b7d584d87d306b2b99abdbb097588196";
-      sha256 = "06308ji2r3733w9rgwphqdqkharf7hc3xliylzbl9hh6fmk3hj55";
+      rev = "365e3d27d922036d5770a2591a3670cc5a3db777";
+      sha256 = "1rgafa05lfvyzznlq1y7cb3b3q3m2df5j82ggjwds7wfl4pm4zcz";
     };
   };
 
@@ -5066,12 +5121,12 @@ let
 
   zenburn = buildVimPluginFrom2Nix {
     pname = "zenburn";
-    version = "2018-04-29";
+    version = "2019-09-13";
     src = fetchFromGitHub {
       owner = "jnurmine";
       repo = "zenburn";
-      rev = "2cacfcb222d9db34a8d1a13bb8bb814f039b98cd";
-      sha256 = "0m5d5sjckirfpdhg9sf1nl5xywvzdx6y04r13m47jlavf79hhimi";
+      rev = "13254888f5ebe53c3d9276c8afc18efe6addec8e";
+      sha256 = "1xdi8q4cggv16bv71ap8y8xrmzb7pjvknrymrnab55fgbpkxhzaj";
     };
   };
 
diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names
index a919e17afa5f..1395147ff728 100644
--- a/pkgs/misc/vim-plugins/vim-plugin-names
+++ b/pkgs/misc/vim-plugins/vim-plugin-names
@@ -1,5 +1,6 @@
 907th/vim-auto-save
 airblade/vim-gitgutter
+airblade/vim-rooter
 ajh17/Spacegray.vim
 albfan/nerdtree-git-plugin
 altercation/vim-colors-solarized
@@ -172,6 +173,7 @@ ledger/vim-ledger
 lepture/vim-jinja
 lervag/vimtex
 lfilho/cosco.vim
+lifepillar/vim-mucomplete
 LnL7/vim-nix
 LucHermitte/lh-brackets
 LucHermitte/lh-vim-lib
@@ -182,6 +184,7 @@ lumiliet/vim-twig
 luochen1990/rainbow
 lyokha/vim-xkbswitch
 machakann/vim-highlightedyank
+machakann/vim-swap
 majutsushi/tagbar
 maksimr/vim-jsbeautify
 MarcWeber/vim-addon-actions
@@ -376,7 +379,9 @@ tikhomirov/vim-glsl
 tmux-plugins/vim-tmux
 tomasr/molokai
 tomlion/vim-solidity
+tommcdo/vim-exchange
 tommcdo/vim-lion
+tommcdo/vim-ninja-feet
 tomtom/tcomment_vim
 tomtom/tlib_vim
 tpope/vim-abolish

From e176117a81eb83eca4ec6eafdeedbbbdea7cb7fa Mon Sep 17 00:00:00 2001
From: Maximilian Bosch <maximilian@mbosch.me>
Date: Sat, 14 Sep 2019 13:59:20 +0200
Subject: [PATCH 127/152] python3Packages.face_recognition_models: fix startup

---
 .../python-modules/face_recognition_models/default.nix        | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/face_recognition_models/default.nix b/pkgs/development/python-modules/face_recognition_models/default.nix
index 960bffb903d6..12587e6792df 100644
--- a/pkgs/development/python-modules/face_recognition_models/default.nix
+++ b/pkgs/development/python-modules/face_recognition_models/default.nix
@@ -1,4 +1,4 @@
-{ buildPythonPackage, stdenv, fetchPypi }:
+{ buildPythonPackage, stdenv, fetchPypi, setuptools }:
 
 buildPythonPackage rec {
   pname = "face_recognition_models";
@@ -12,6 +12,8 @@ buildPythonPackage rec {
   # no module named `tests` as no tests are available
   doCheck = false;
 
+  propagatedBuildInputs = [ setuptools ];
+
   meta = with stdenv.lib; {
     homepage = https://github.com/ageitgey/face_recognition_models;
     license = licenses.cc0;

From 34b58364e4cef17448544020e2b0923775f46cfc Mon Sep 17 00:00:00 2001
From: Daniel Schaefer <git@danielschaefer.me>
Date: Sat, 14 Sep 2019 14:00:47 +0200
Subject: [PATCH 128/152] pytest: Add pytest_4 as its own attribute

Many packages aren't yet updated to handle the incompatible changes of
pytest5 so we still need v4.
---
 pkgs/top-level/python-packages.nix | 20 +++++++++++---------
 1 file changed, 11 insertions(+), 9 deletions(-)

diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 96885a83ebb4..62901ef20520 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -1991,15 +1991,17 @@ in {
 
   pyhepmc = callPackage ../development/python-modules/pyhepmc { };
 
-  pytest = if isPy3k then
-    callPackage ../development/python-modules/pytest {
-      # hypothesis tests require pytest that causes dependency cycle
-      hypothesis = self.hypothesis.override { doCheck = false; };
-    }
-  else callPackage ../development/python-modules/pytest/2.nix {
-      # hypothesis tests require pytest that causes dependency cycle
-      hypothesis = self.hypothesis.override { doCheck = false; };
-    };
+  pytest = if isPy3k then self.pytest_5 else self.pytest_4;
+
+  pytest_5 = callPackage ../development/python-modules/pytest {
+    # hypothesis tests require pytest that causes dependency cycle
+    hypothesis = self.hypothesis.override { doCheck = false; };
+  };
+
+  pytest_4 = callPackage ../development/python-modules/pytest/4.nix {
+    # hypothesis tests require pytest that causes dependency cycle
+    hypothesis = self.hypothesis.override { doCheck = false; };
+  };
 
   pytest-helpers-namespace = callPackage ../development/python-modules/pytest-helpers-namespace { };
 

From 3cb0ae999fd45f6f1f4eae4fac3b62c2905db9f4 Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@protonmail.ch>
Date: Sat, 14 Sep 2019 08:04:28 -0400
Subject: [PATCH 129/152] Revert "networkmanager,modemmanager: fix service
 symlinks for systemd v243"

---
 nixos/modules/services/networking/networkmanager.nix | 5 -----
 pkgs/tools/networking/modem-manager/default.nix      | 7 +++++++
 pkgs/tools/networking/network-manager/default.nix    | 5 +++++
 3 files changed, 12 insertions(+), 5 deletions(-)

diff --git a/nixos/modules/services/networking/networkmanager.nix b/nixos/modules/services/networking/networkmanager.nix
index db047e6d0b89..db4d0e328e2d 100644
--- a/nixos/modules/services/networking/networkmanager.nix
+++ b/nixos/modules/services/networking/networkmanager.nix
@@ -468,16 +468,12 @@ in {
         mkdir -m 700 -p /etc/ipsec.d
         mkdir -m 755 -p ${stateDirs}
       '';
-
-      aliases = [ "dbus-org.freedesktop.NetworkManager.service" ];
     };
 
     systemd.services.NetworkManager-wait-online = {
       wantedBy = [ "network-online.target" ];
     };
 
-    systemd.services.ModemManager.aliases = [ "dbus-org.freedesktop.ModemManager1.service" ];
-
     systemd.services.nm-setup-hostsdirs = mkIf dynamicHostsEnabled {
       wantedBy = [ "NetworkManager.service" ];
       before = [ "NetworkManager.service" ];
@@ -499,7 +495,6 @@ in {
 
       # useful binaries for user-specified hooks
       path = [ pkgs.iproute pkgs.utillinux pkgs.coreutils ];
-      aliases = [ "dbus-org.freedesktop.nm-dispatcher.service" ];
     };
 
     # Turn off NixOS' network management when networking is managed entirely by NetworkManager
diff --git a/pkgs/tools/networking/modem-manager/default.nix b/pkgs/tools/networking/modem-manager/default.nix
index fedc8d4b71d7..b2644d0c2a49 100644
--- a/pkgs/tools/networking/modem-manager/default.nix
+++ b/pkgs/tools/networking/modem-manager/default.nix
@@ -32,6 +32,13 @@ stdenv.mkDerivation rec {
 
   doCheck = true;
 
+  postInstall = ''
+    # systemd in NixOS doesn't use `systemctl enable`, so we need to establish
+    # aliases ourselves.
+    ln -s $out/etc/systemd/system/ModemManager.service \
+      $out/etc/systemd/system/dbus-org.freedesktop.ModemManager1.service
+  '';
+
   meta = with stdenv.lib; {
     description = "WWAN modem manager, part of NetworkManager";
     homepage = https://www.freedesktop.org/wiki/Software/ModemManager/;
diff --git a/pkgs/tools/networking/network-manager/default.nix b/pkgs/tools/networking/network-manager/default.nix
index 490ebd0fa6bb..5bc915caea65 100644
--- a/pkgs/tools/networking/network-manager/default.nix
+++ b/pkgs/tools/networking/network-manager/default.nix
@@ -97,6 +97,11 @@ in stdenv.mkDerivation rec {
   '';
 
   postInstall = ''
+    # systemd in NixOS doesn't use `systemctl enable`, so we need to establish
+    # aliases ourselves.
+    ln -s $out/etc/systemd/system/NetworkManager-dispatcher.service $out/etc/systemd/system/dbus-org.freedesktop.nm-dispatcher.service
+    ln -s $out/etc/systemd/system/NetworkManager.service $out/etc/systemd/system/dbus-org.freedesktop.NetworkManager.service
+
     # Add the legacy service name from before #51382 to prevent NetworkManager
     # from not starting back up:
     # TODO: remove this once 19.10 is released

From dcdf68ee0153643e1da518ab7ff559a19ac63e6d Mon Sep 17 00:00:00 2001
From: Robin Gloster <mail@glob.in>
Date: Sat, 14 Sep 2019 14:04:51 +0200
Subject: [PATCH 130/152] xen_4_10: 4.10.0 -> 4.10.4

glusterfs compatibility fix, also added Wno-error flags for gcc8
compatibility
---
 pkgs/applications/virtualization/xen/4.10.nix |  28 +-
 .../virtualization/xen/xsa-patches.nix        | 452 +-----------------
 2 files changed, 14 insertions(+), 466 deletions(-)

diff --git a/pkgs/applications/virtualization/xen/4.10.nix b/pkgs/applications/virtualization/xen/4.10.nix
index 042b01e86780..d3c2ed9060c7 100644
--- a/pkgs/applications/virtualization/xen/4.10.nix
+++ b/pkgs/applications/virtualization/xen/4.10.nix
@@ -38,11 +38,11 @@ let
 in
 
 callPackage (import ./generic.nix (rec {
-  version = "4.10.0";
+  version = "4.10.4";
 
   src = fetchurl {
     url = "https://downloads.xenproject.org/release/xen/${version}/xen-${version}.tar.gz";
-    sha256 = "0i38ap5b5m1kix6xb0vn9ya1yab35adyc98bzfnbq4lb7w1afqh2";
+    sha256 = "0ipkr7b3v3y183n6nfmz7q3gnzxa20011df4jpvxi6pmr8cpnkwh";
   };
 
   # Sources needed to build tools and firmwares.
@@ -52,12 +52,9 @@ callPackage (import ./generic.nix (rec {
         url = https://xenbits.xen.org/git-http/qemu-xen.git;
         # rev = "refs/tags/qemu-xen-${version}";
         # use revision hash - reproducible but must be updated with each new version
-        rev = "b79708a8ed1b3d18bee67baeaf33b3fa529493e2";
-        sha256 = "1yxxad6nvlfmrbgyc8ix19qmrsn1rx4zpyiqnfi4x4kg94acwa5w";
+        rev = "qemu-xen-${version}";
+        sha256 = "0laxvhdjz1njxjvq3jzw2yqvdr9gdn188kqjf2gcrfzgih7xv2ym";
       };
-      patches = [
-        qemuMemfdBuildFix
-      ];
       buildInputs = qemuDeps;
       postPatch = ''
         # needed in build but /usr/bin/env is not available in sandbox
@@ -151,17 +148,16 @@ callPackage (import ./generic.nix (rec {
     ++ optional (withOVMF) "--with-system-ovmf=${OVMF.fd}/FV/OVMF.fd"
     ++ optional (withInternalOVMF) "--enable-ovmf";
 
-  patches = with xsa; flatten [
-    XSA_252
-    XSA_253
-    XSA_255_1
-    XSA_255_2
-    XSA_256
+  NIX_CFLAGS_COMPILE = [
+    # Fix build on Glibc 2.24.
+    "-Wno-error=deprecated-declarations"
+    # Fix build with GCC 8
+    "-Wno-error=maybe-uninitialized"
+    "-Wno-error=stringop-truncation"
+    "-Wno-error=format-truncation"
+    "-Wno-error=array-bounds"
   ];
 
-  # Fix build on Glibc 2.24.
-  NIX_CFLAGS_COMPILE = "-Wno-error=deprecated-declarations";
-
   postPatch = ''
     # Avoid a glibc >= 2.25 deprecation warnings that get fatal via -Werror.
     sed 1i'#include <sys/sysmacros.h>' \
diff --git a/pkgs/applications/virtualization/xen/xsa-patches.nix b/pkgs/applications/virtualization/xen/xsa-patches.nix
index de692820d8f7..26cdbc1f65f7 100644
--- a/pkgs/applications/virtualization/xen/xsa-patches.nix
+++ b/pkgs/applications/virtualization/xen/xsa-patches.nix
@@ -66,30 +66,12 @@ in {
     sha256 = "0nnznkrvfbbc8z64dr9wvbdijd4qbpc0wz2j5vpmx6b32sm7932f";
   });
 
-  # 4.8
-  XSA_202 = (xsaPatch {
-    name = "202";
-    sha256 = "0j1d5akcjgx8w2c6w6p9znv77fkmps0880m2xgpbgs1ra9grshm1";
-  });
-
-  # 4.8
-  XSA_203 = (xsaPatch {
-    name = "203";
-    sha256 = "1s1q7xskvpg87ivwfaiqr0cj3ajdkhkhpmpikfkvq127h8hhmd8j";
-  });
-
   # 4.5
   XSA_204_45 = (xsaPatch {
     name = "204-4.5";
     sha256 = "083z9pbdz3f532fnzg7n2d5wzv6rmqc0f4mvc3mnmkd0rzqw8vcp";
   });
 
-  # 4.8
-  XSA_204 = (xsaPatch {
-    name = "204-4.8";
-    sha256 = "0rs498s4w2alz3h6jhlr2y0ni630vhggmxbrd1p1p3gcv8p6zzrr";
-  });
-
   # 4.5
   XSA_206_45 = [
     (xsaPatch {
@@ -190,86 +172,12 @@ in {
     })
   ];
 
-  # 4.8
-  XSA_206 = [
-    (xsaPatch {
-      name = "206-4.8/0001-xenstored-apply-a-write-transaction-rate-limit";
-      sha256 = "1c81d93i3qx7l38f9af0sd84w5x51zvn262mzl25ilcklql4kzl6";
-    })
-    (xsaPatch {
-      name = "206-4.8/0002-xenstored-Log-when-the-write-transaction-rate-limit-";
-      sha256 = "0b8iw409wi1x6p0swpnr51lcdlla1lgxjv5f910sj4wl96bca84q";
-    })
-    (xsaPatch {
-      name = "206-4.8/0003-oxenstored-comments-explaining-some-variables";
-      sha256 = "1d3n0y9syya4kaavrvqn01d3wsn85gmw7qrbylkclznqgkwdsr2p";
-    })
-    (xsaPatch {
-      name = "206-4.8/0004-oxenstored-handling-of-domain-conflict-credit";
-      sha256 = "020rw7hgc0dmhr4admz91kd99b4z1bdpji47nsy1255bjgvwc01k";
-    })
-    (xsaPatch {
-      name = "206-4.8/0005-oxenstored-ignore-domains-with-no-conflict-credit";
-      sha256 = "1ilhcgyn803bxvfbqv0ihfrh9jfpp0lidkv7i4613f9v9vjm8q0h";
-    })
-    (xsaPatch {
-      name = "206-4.8/0006-oxenstored-add-transaction-info-relevant-to-history-";
-      sha256 = "1dbd9pzda6hn9wj9pck44dlgz9nxvch3bzgrpaivanww8llxdfzz";
-    })
-    (xsaPatch {
-      name = "206-4.8/0007-oxenstored-support-commit-history-tracking";
-      sha256 = "1jfr56c22fqkhj6fnv1ha7zsid86zm9l0nihpb8m932xgc4a6h9h";
-    })
-    (xsaPatch {
-      name = "206-4.8/0008-oxenstored-only-record-operations-with-side-effects-";
-      sha256 = "1y845hj8krjdrirbd2jx4jqgnylwjv7bxnk7474lkld5kdnlbjyf";
-    })
-    (xsaPatch {
-      name = "206-4.8/0009-oxenstored-discard-old-commit-history-on-txn-end";
-      sha256 = "1lcr9gz2b77x74sr1flfymyyz4xzs04iv88rc1633ibyqxmvk0lx";
-    })
-    (xsaPatch {
-      name = "206-4.8/0010-oxenstored-track-commit-history";
-      sha256 = "1qwnivak4y038mpby75aaz0y70r0l3yc3hsz6wl5x0b74q6yy0ja";
-    })
-    (xsaPatch {
-      name = "206-4.8/0011-oxenstored-blame-the-connection-that-caused-a-transa";
-      sha256 = "0p2w5ddyhc6d95dnlxzc5k77j063p02d53ab7m7ijfm7m6gknq8y";
-    })
-    (xsaPatch {
-      name = "206-4.8/0012-oxenstored-allow-self-conflicts";
-      sha256 = "1571l81m30cbmqm4pk33q33p3dy58sfy2lnkl2wbgl2b3mkk657l";
-    })
-    (xsaPatch {
-      name = "206-4.8/0013-oxenstored-do-not-commit-read-only-transactions";
-      sha256 = "15985wl635w22dddjyx5l97b5p6m55mzv5ygk7xr0jx7mi192f9x";
-    })
-    (xsaPatch {
-      name = "206-4.8/0014-oxenstored-don-t-wake-to-issue-no-conflict-credit";
-      sha256 = "08672w4gaf2n3r8xy09h874gh5lg2vnrkjzq6xzvzdhdl092mipw";
-    })
-    (xsaPatch {
-      name = "206-4.8/0015-oxenstored-transaction-conflicts-improve-logging";
-      sha256 = "0ck98ms0py8wjsc38pbx6222x7n6l90zckfa7m7nnszsyc0sxxad";
-    })
-    (xsaPatch {
-      name = "206-4.8/0016-oxenstored-trim-history-in-the-frequent_ops-function";
-      sha256 = "014zs6i4gzrimn814k5i7gz66vbb0adkzr2qyai7i4fxc9h9r7w8";
-    })
-  ];
-
   # 4.5 - 4.8
   XSA_207 = (xsaPatch {
     name = "207";
     sha256 = "0wdlhijmw9mdj6a82pyw1rwwiz605dwzjc392zr3fpb2jklrvibc";
   });
 
-  # 4.8
-  XSA_210 = (xsaPatch {
-    name = "210";
-    sha256 = "02mykxqxnsrd0sr4ij022j8y7618wzi2a6j6j761vx8qgmh11xai";
-  });
-
   # 4.5 - 4.8
   XSA_212 = (xsaPatch {
     name = "212";
@@ -282,12 +190,6 @@ in {
     sha256 = "1vnqf89ydacr5bq3d6z2r33xb2sn5vsd934rncyc28ybc9rvj6wm";
   });
 
-  # 4.8
-  XSA_213 = (xsaPatch {
-    name = "213-4.8";
-    sha256 = "0ia3zr6r3bqy2h48fdy7p0iz423lniy3i0qkdvzgv5a8m80darr2";
-  });
-
   # 4.5 - 4.8
   XSA_214 = (xsaPatch {
     name = "214";
@@ -306,12 +208,6 @@ in {
     sha256 = "067pgsfrb9py2dhm1pk9g8f6fs40vyfrcxhj8c12vzamb6svzmn4";
   });
 
-  # 4.6 - 4.8
-  XSA_217 = (xsaPatch {
-    name = "217";
-    sha256 = "1khs5ilif14dzcm7lmikjzkwsrfzlmir1rgrgzkc411gf18ylzmj";
-  });
-
   # 4.5
   XSA_218_45 = [
     (xsaPatch {
@@ -332,46 +228,18 @@ in {
     })
   ];
 
-  # 4.8
-  XSA_218 = [
-    (xsaPatch {
-      name = "218-4.8/0001-gnttab-fix-unmap-pin-accounting-race";
-      sha256 = "0r363frai239r2wmwxi48kcr50gbk5l64nja0h9lppi3z2y3dkdd";
-    })
-    (xsaPatch {
-      name = "218-4.8/0002-gnttab-Avoid-potential-double-put-of-maptrack-entry";
-      sha256 = "07wm06i7frv7bsaykakx3g9h0hfqv96zcadvwf6wv194dggq1plc";
-    })
-    (xsaPatch {
-      name = "218-4.8/0003-gnttab-correct-maptrack-table-accesses";
-      sha256 = "0ad0irc3p4dmla8sp3frxbh2qciji1dipkslh0xqvy2hyf9p80y9";
-    })
-  ];
-
   # 4.5
   XSA_219_45 = (xsaPatch {
     name = "219-4.5";
     sha256 = "003msr5vhsc66scmdpgn0lp3p01g4zfw5vj86y5lw9ajkbaywdsm";
   });
 
-  # 4.8
-  XSA_219 = (xsaPatch {
-    name = "219-4.8";
-    sha256 = "16q7kiamy86x8qdvls74wmq5j72kgzgdilryig4q1b21mp0ij1jq";
-  });
-
   # 4.5
   XSA_220_45 = (xsaPatch {
     name = "220-4.5";
     sha256 = "1dj9nn6lzxlipjb3nb7b9m4337fl6yn2bd7ap1lqrjn8h9zkk1pp";
   });
 
-  # 4.8
-  XSA_220 = (xsaPatch {
-    name = "220-4.8";
-    sha256 = "0214qyqx7qap5y1pdi9fm0vz4y2fbyg71gaq36fisknj35dv2mh5";
-  });
-
   # 4.5 - 4.8
   XSA_221 = (xsaPatch {
     name = "221";
@@ -390,18 +258,6 @@ in {
     })
   ];
 
-  # 4.8
-  XSA_222 = [
-    (xsaPatch {
-      name = "222-1";
-      sha256 = "0x02x4kqwfw255638fh2zcxwig1dy6kadlmqim1jgnjgmrvvqas2";
-    })
-    (xsaPatch {
-      name = "222-2-4.8";
-      sha256 = "1xhyp6q3c5l8djh965g1i8201m2wvhms8k886h4sn30hks38giin";
-    })
-  ];
-
   # 4.5 - 4.8
   XSA_223 = (xsaPatch {
     name = "223";
@@ -428,32 +284,6 @@ in {
     })
   ];
 
-  # 4.8
-  XSA_224 = [
-    (xsaPatch {
-      name = "224-4.8/0001-gnttab-Fix-handling-of-dev_bus_addr-during-unmap";
-      sha256 = "1k326yan5811qzyvpdfkv801a19nyd09nsqayi8gyh58xx9c21m4";
-    })
-    (xsaPatch {
-      name = "224-4.8/0002-gnttab-never-create-host-mapping-unless-asked-to";
-      sha256 = "06nj1x59bbx9hrj26xmvbw8z805lfqhld9hm0ld0fs6dmcpqzcck";
-    })
-    (xsaPatch {
-      name = "224-4.8/0003-gnttab-correct-logic-to-get-page-references-during-m";
-      sha256 = "0kmag6fdsskgplcvzqp341yfi6pgc14wvjj58bp7ydb9hdk53qx2";
-    })
-    (xsaPatch {
-      name = "224-4.8/0004-gnttab-__gnttab_unmap_common_complete-is-all-or-noth";
-      sha256 = "1ww80pi7jr4gjpymkcw8qxmr5as18b2asdqv35527nqprylsff9f";
-    })
-  ];
-
-  # 4.6 - 4.8
-  XSA_225 = (xsaPatch {
-    name = "225";
-    sha256 = "0lcp2bs0r849xnvhrdf8s821v36cqdbzk8lwz6chrjhjalk6ha2g";
-  });
-
   # 4.5
   XSA_226_45 = [
     (xsaPatch {
@@ -466,42 +296,12 @@ in {
     })
   ];
 
-  # 4.8 - 4.9
-  XSA_226 = [
-    (xsaPatch {
-      name = "226-4.9/0001-gnttab-dont-use-possibly-unbounded-tail-calls";
-      sha256 = "1hx47ppv5q33cw4dwp82lgvv4fp28gx7rxijw0iaczsv8bvb8vcg";
-    })
-    (xsaPatch {
-      name = "226-4.9/0002-gnttab-fix-transitive-grant-handling";
-      sha256 = "1gzp8m2zfihwlk71c3lqyd0ajh9h11pvkhzhw0mawckxy0qksvlc";
-    })
-  ];
-
   # 4.5
   XSA_227_45 = (xsaPatch {
     name = "227-4.5";
     sha256 = "1qfjfisgqm4x98qw54x2qrvgjnvvzizx9p1pjhcnsps9q6g1y3x8";
   });
 
-  # 4.8 - 4.9
-  XSA_227 = (xsaPatch {
-    name = "227";
-    sha256 = "0zdcm43i5n08rh7rrnb0fcssvd4fgawwmizsa16w2ak7pzvgmg94";
-  });
-
-  # 4.8
-  XSA_228_48 = (xsaPatch {
-    name = "228-4.8";
-    sha256 = "085pnzwyv0rdb51hv5vhbhwfyxl0wg8sxcm912gjq8z7da5cv10n";
-  });
-
-  # 4.9
-  XSA_228 = (xsaPatch {
-    name = "228";
-    sha256 = "0c9nvfpnr5ira7ha3fszhvvh71nsxrvmzrab56xwjhl2dbw2yy23";
-  });
-
   # 4.5 - 4.9
   XSA_230 = (xsaPatch {
     name = "230";
@@ -514,12 +314,6 @@ in {
     sha256 = "06gwx2f1lg51dfk2b4zxp7wv9c4pxdi87pg2asvmxqc78ir7l5s6";
   });
 
-  # 4.8 - 4.9
-  XSA_231 = (xsaPatch {
-    name = "231-4.9";
-    sha256 = "09r8xxq2fd52wrk6i0y0sk3nbidfg6pzzrkx327hfmdjj76iyz3b";
-  });
-
   # 4.5 - 4.9
   XSA_232 = (xsaPatch {
     name = "232";
@@ -538,42 +332,18 @@ in {
     sha256 = "1ji6hbgybb4gbgz5l5fis9midnvjbddzam8d63377rkzdyb3yz9f";
   });
 
-  # 4.8
-  XSA_234_48 = (xsaPatch {
-    name = "234-4.8";
-    sha256 = "08n1pf7z5y67dmay1ap39bi81clgkx82fpmfn7jsh8k4aw94jrsa";
-  });
-
-  # 4.9
-  XSA_234 = (xsaPatch {
-    name = "234-4.9";
-    sha256 = "1znmxg432is0virw8321gax8zqq2zcmi2pc5p2j31sixylixsvzx";
-  });
-
   # 4.5
   XSA_235_45 = (xsaPatch {
     name = "235-4.5";
     sha256 = "0hhgnql2gji111020z4wiyzg23wqs6ymanb67rg11p4qad1fp3ff";
   });
 
-  # 4.8 - 4.9
-  XSA_235 = (xsaPatch {
-    name = "235-4.9";
-    sha256 = "1rj4jkmh79wm30jq9f8x65qv3al8l91zc3m5s23q0x6abn3pfb9z";
-  });
-
   # 4.5
   XSA_236_45 = (xsaPatch {
     name = "236-4.5";
     sha256 = "0hcla86x81wykssd2967gblp7fzx61290p4ls4v0hcyxdg2bs2yz";
   });
 
-  # 4.8 - 4.9
-  XSA_236 = (xsaPatch {
-    name = "236-4.9";
-    sha256 = "0vqxy7mgflga05l33j3488fwxmdw3p9yxj4ylhk9n3nw8id72ghq";
-  });
-
   # 4.5
   XSA_237_45 = [
     (xsaPatch {
@@ -598,78 +368,18 @@ in {
     })
   ];
 
-  # 4.8
-  XSA_237_48 = [
-    (xsaPatch {
-      name = "237-4.8/0001-x86-dont-allow-MSI-pIRQ-mapping-on-unowned-device";
-      sha256 = "0qjisp37lwi2611mp7fbbm1s7m0bx726rrg79dnxs2mj0skw59iv";
-    })
-    (xsaPatch {
-      name = "237-4.8/0002-x86-enforce-proper-privilege-when-mapping-pIRQ-s";
-      sha256 = "05q1dny13jrqhjfwak7r635mqp9chpibjvn8b7d90japc1nzpq62";
-    })
-    (xsaPatch {
-      name = "237-4.8/0003-x86-MSI-disallow-redundant-enabling";
-      sha256 = "1907lv8nb2zhpb6k6jlw4m0hm0n0lyd69vfr3wpzbc56dn0w7jqd";
-    })
-    (xsaPatch {
-      name = "237-4.8/0004-x86-IRQ-conditionally-preserve-irq-pirq-mapping-on-error";
-      sha256 = "06nrq0bx3p9ipab2r1why6qm4g32dj0x5q24hfkwc6ih0l9xwf8h";
-    })
-    (xsaPatch {
-      name = "237-4.8/0005-x86-FLASK-fix-unmap-domain-IRQ-XSM-hook";
-      sha256 = "1nbg7bjw2hv55gnkhf6chkh35va6brs08acq1d5jxncl6kv0amc1";
-    })
-  ];
-
-  # 4.9
-  XSA_237 = [
-    (xsaPatch {
-      name = "237-4.9/0001-x86-dont-allow-MSI-pIRQ-mapping-on-unowned-device";
-      sha256 = "1cbl24mqxa62h0wgsnrpcs6y6vs53znzj7g8dfsbmf74xwrd4px6";
-    })
-    (xsaPatch {
-      name = "237-4.9/0002-x86-enforce-proper-privilege-when-mapping-pIRQ-s";
-      sha256 = "0p60148j18b78pxz0dx5ymh1gyrhg2cgmxq0jxmbk090bc4jql35";
-    })
-    (xsaPatch {
-      name = "237-4.9/0003-x86-MSI-disallow-redundant-enabling";
-      sha256 = "1907lv8nb2zhpb6k6jlw4m0hm0n0lyd69vfr3wpzbc56dn0w7jqd";
-    })
-    (xsaPatch {
-      name = "237-4.9/0004-x86-IRQ-conditionally-preserve-irq-pirq-mapping-on-error";
-      sha256 = "0q95z5641amni53agimnzbspva53p0hz5wl16zaz2yhnjasj5pzr";
-    })
-    (xsaPatch {
-      name = "237-4.9/0005-x86-FLASK-fix-unmap-domain-IRQ-XSM-hook";
-      sha256 = "0bnqx9w7ppgx8wxj2zw09z0rkv1jzn3r0bd76cz0r22wz29fsdp2";
-    })
-  ];
-
   # 4.5
   XSA_238_45 = (xsaPatch {
     name = "238-4.5";
     sha256 = "1x2fg5vfv5jc084h5gjm6fq0nxjpzvi96px3sqzz4pvsvy4y4i1z";
   });
 
-  # 4.8 - 4.9
-  XSA_238 = (xsaPatch {
-    name = "238";
-    sha256 = "1cbmg1bi5ajh7qbwsl92ynaxw2c3p7i24p3wds81r4n93r0y5dxk";
-  });
-
   # 4.5
   XSA_239_45 = (xsaPatch {
     name = "239-4.5";
     sha256 = "06bi8q3973yajxsdj7pcqarvb56q2gisxdiy0cpbyffbmpkfv3h6";
   });
 
-  # 4.8 - 4.9
-  XSA_239 = (xsaPatch {
-    name = "239";
-    sha256 = "1a9r8j7167s43ds5i7v7mm4y970vjnbhhkrjzpmzlcx8kcz96vh3";
-  });
-
   # 4.5
   XSA_240_45 = [
     (xsaPatch {
@@ -682,42 +392,12 @@ in {
     })
   ];
 
-  # 4.8
-  XSA_240_48 = [
-    (xsaPatch {
-      name = "240-4.8/0001-x86-limit-linear-page-table-use-to-a-single-level";
-      sha256 = "0m44qhhqk2pdwqg8g28pypqrylq6iw00k9qrzf6qd0iza2y42kgj";
-    })
-    (xsaPatch {
-      name = "240-4.8/0002-x86-mm-Disable-PV-linear-pagetables-by-default";
-      sha256 = "1jd720wvngj9wq3fprdhakxvqlff0jd8zcx2pd3vsn2qvjbvr2gf";
-    })
-  ];
-
-  # 4.9
-  XSA_240 = [
-    (xsaPatch {
-      name = "240-4.9/0001-x86-limit-linear-page-table-use-to-a-single-level";
-      sha256 = "1759ni80aifakm44g4cc6pnmbcn1xjic8j66fvj0vibm0wqk6xck";
-    })
-    (xsaPatch {
-      name = "240-4.9/0002-x86-mm-Disable-PV-linear-pagetables-by-default";
-      sha256 = "0g6dpi006p5cjxw5d8h33p0429fdmdm6nqzj0m63ralpqvns3ib5";
-    })
-  ];
-
   # 4.5 - 4.8
   XSA_241 = (xsaPatch {
     name = "241-4.8";
     sha256 = "16zb75kzs98f4mdxhbyczk5mbh9dvn6j3yhfafki34x1dfdnq4pj";
   });
 
-  # 4.9
-  XSA_241_49 = (xsaPatch {
-    name = "241-4.9";
-    sha256 = "0xlhin7wkhmlnbp9mqcbq3q4drdwb5la482ja9nwkhi8i867p6wc";
-  });
-
   # 4.5 - 4.9
   XSA_242 = (xsaPatch {
     name = "242-4.9";
@@ -736,30 +416,12 @@ in {
     })
   ];
 
-  # 4.8
-  XSA_243_48 = (xsaPatch {
-    name = "243-4.8";
-    sha256 = "1q60zn55l9wpq45nrxh0av59sjz0jg8pkjm1gkyywkdsgg4fg5z4";
-  });
-
-  # 4.9
-  XSA_243 = (xsaPatch {
-    name = "243";
-    sha256 = "06fnbnh9zlsbkqih9ipnb7a8gly54m7lp17d854j1r370ad3c4yg";
-  });
-
   # 4.5
   XSA_244_45 = (xsaPatch {
     name = "244-4.5";
     sha256 = "05ci3vdl1ywfjpzcvsy1k52whxjk8pxzj7dh3r94yqasr56i5v2l";
   });
 
-  # 4.8 - 4.9
-  XSA_244 = (xsaPatch {
-    name = "244";
-    sha256 = "10308xsgmhb0vg6fk0ql8v94zifv6dcv6vkaicryfp405yj2rzkm";
-  });
-
   # 4.5 - 4.9
   XSA_245 = [
     (xsaPatch {
@@ -780,26 +442,6 @@ in {
     })
   ];
 
-  # 4.8 - 4.9
-  XSA_246 = [
-    (xsaPatch {
-      name = "246-4.9";
-      sha256 = "0z68vm0z5zvv9gm06pxs9kxq2q9fdbl0l0cm71ggzdplg1vw0snz";
-    })
-  ];
-
-  # 4.8
-  XSA_247_48 = [
-    (xsaPatch {
-      name = "247-4.8/0001-p2m-Always-check-to-see-if-removing-a-p2m-entry-actu";
-      sha256 = "0kvjrk90n69s721c2qj2df5raml3pjk6bg80aig353p620w6s3xh";
-    })
-    (xsaPatch {
-      name = "247-4.8/0002-p2m-Check-return-value-of-p2m_set_entry-when-decreas";
-      sha256 = "1s9kv6h6dd8psi5qf5l5gpk9qhq8blckwhl76cjbldcgi6imb3nr";
-    })
-  ];
-
   # 4.5
   XSA_247_45 = [
     (xsaPatch {
@@ -820,14 +462,6 @@ in {
     })
   ];
 
-  # 4.8
-  XSA_248_48 = [
-    (xsaPatch {
-      name = "248-4.8";
-      sha256 = "1ycw29q22ymxg18kxpr5p7vhpmp8klssbp5gq77hspxzz2mb96q1";
-    })
-  ];
-
   # 4.5 .. 4.9
   XSA_249 = [
    (xsaPatch {
@@ -835,6 +469,7 @@ in {
       sha256 = "0v6ngzqhkz7yv4n83xlpxfbkr2qyg5b1cds7ikkinm86hiqy6agl";
     })
   ];
+
   # 4.5
   XSA_250_45 = [
    (xsaPatch {
@@ -842,13 +477,7 @@ in {
       sha256 = "0pqldl6qnl834gvfp90z247q9xcjh3835s2iffnajz7jhjb2145d";
     })
   ];
-  # 4.8 ...
-  XSA_250 = [
-   (xsaPatch {
-      name = "250";
-      sha256 = "1wpigg8kmha57sspqqln3ih9nbczsw6rx3v72mc62lh62qvwd7x8";
-    })
-  ];
+
   # 4.5
   XSA_251_45 = [
    (xsaPatch {
@@ -856,81 +485,4 @@ in {
       sha256 = "0lc94cx271z09r0mhxaypyd9d4740051p28idf5calx5228dqjgm";
     })
   ];
-  # 4.8
-  XSA_251_48 = [
-   (xsaPatch {
-      name = "251-4.8";
-      sha256 = "079wi0j6iydid2zj7k584w2c393kgh588w7sjz2nn4039qn8k9mq";
-    })
-  ];
-  # 4.8
-  XSA_252_49 = [
-   (xsaPatch {
-      name = "252-4.9";
-      sha256 = "03sbn90nlkk5ba1n168rxjkc7x3mqj7rfqvspbwblmwikfbnms2n";
-    })
-  ];
-  # 4.8
-  XSA_255_49_1= [
-   (xsaPatch {
-      name = "255-4.9-1";
-      sha256 = "0gbin7yxbkq40lvm3gvj1vffavvbng3zpd2m8l1kqyz0rv4vm9zc";
-    })
-  ];
-  # 4.8
-  XSA_255_49_2= [
-   (xsaPatch {
-      name = "255-4.9-2";
-      sha256 = "0fyg5nnyfpfr80qq83pr64zjp5w1nx94bdblzsjap8gaqcahyr12";
-    })
-  ];
-  # 4.8
-  XSA_256_48= [
-   (xsaPatch {
-      name = "256-4.8";
-      sha256 = "1w84f717kxwx0h3rw18r4f8pl0l1h5xlj5fy80sr0ws4xkp1qdn4";
-    })
-  ];
-
-
-  # 4.10
-  XSA_252 = [
-   (xsaPatch {
-      name = "252";
-      sha256 = "0v4sg20dnvnwrjh3x69gk81v2kmcql7g2s044vg3wcxhzvij1rrn";
-    })
-  ];
-
-  # 4.10
-  XSA_253 = [
-   (xsaPatch {
-      name = "253";
-      sha256 = "0445vzlzy3gd499xraqh5r4qjar6qr0y3813h22jy1n84nhxz27i";
-    })
-  ];
-
-  # 4.10
-  XSA_255_1 = [
-   (xsaPatch {
-      name = "255-1";
-      sha256 = "05g2f3ji1rrjlw3yw4nrns50pnmsib8ybrf64scr1817mj0q9myr";
-    })
-  ];
-
-  # 4.10
-  XSA_255_2 = [
-   (xsaPatch {
-      name = "255-2";
-      sha256 = "08wbngw5z0f9g8di59hww3hhi7j9z49bpc4xlwn5akfcwbgf0961";
-    })
-  ];
-
-  # 4.10
-  XSA_256 = [
-   (xsaPatch {
-      name = "256";
-      sha256 = "1hicwhbwj6k25px55f4ncx1c5xiihi8pfvsb3kv57k7kaicb7pza";
-    })
-  ];
-
 }

From 4a99b423fe56876cb240ba0824631a745f747924 Mon Sep 17 00:00:00 2001
From: Doron Behar <doron.behar@gmail.com>
Date: Sat, 14 Sep 2019 15:18:12 +0300
Subject: [PATCH 131/152] sccache: 0.2.10 -> 0.2.11

---
 pkgs/development/tools/misc/sccache/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/tools/misc/sccache/default.nix b/pkgs/development/tools/misc/sccache/default.nix
index b9a4658d3dee..998abe112a6f 100644
--- a/pkgs/development/tools/misc/sccache/default.nix
+++ b/pkgs/development/tools/misc/sccache/default.nix
@@ -1,14 +1,14 @@
 { stdenv, fetchFromGitHub, cargo, rustc, rustPlatform, pkgconfig, glib, openssl, darwin }:
 
 rustPlatform.buildRustPackage rec {
-  version = "0.2.10";
+  version = "0.2.11";
   pname = "sccache";
 
   src = fetchFromGitHub {
     owner = "mozilla";
     repo = "sccache";
     rev = version;
-    sha256 = "13fiifv3bi9shzp30wd7k2nd2j43vzdhk6z5rnfn5a9hmijqpg9n";
+    sha256 = "0084ddvzjgdpkwqc38kvzaz8n6av9ml3qqlkjma70hsis8w8gqjz";
   };
   cargoSha256 = "1bkglgrasyjyzjj9mwm32d3g3mg5yv74jj3zl7jf20dlq3rg3fh6";
 

From cbab4663f33f59b1fe347beb66f12d0f73746301 Mon Sep 17 00:00:00 2001
From: Daniel Schaefer <git@danielschaefer.me>
Date: Sat, 14 Sep 2019 14:01:38 +0200
Subject: [PATCH 132/152] paperless: Use pytest_4 in django-crispy-forms

Doesn't build with pytest_5
---
 .../office/paperless/python-modules/django-crispy-forms.nix   | 4 ++--
 pkgs/development/python-modules/pytest/{2.nix => 4.nix}       | 0
 2 files changed, 2 insertions(+), 2 deletions(-)
 rename pkgs/development/python-modules/pytest/{2.nix => 4.nix} (100%)

diff --git a/pkgs/applications/office/paperless/python-modules/django-crispy-forms.nix b/pkgs/applications/office/paperless/python-modules/django-crispy-forms.nix
index c1e0f7da30f6..465da3862471 100644
--- a/pkgs/applications/office/paperless/python-modules/django-crispy-forms.nix
+++ b/pkgs/applications/office/paperless/python-modules/django-crispy-forms.nix
@@ -1,5 +1,5 @@
 { lib, buildPythonPackage, fetchFromGitHub
-, pytest, pytest-django, django }:
+, pytest_4, pytest-django, django }:
 
 buildPythonPackage {
   pname = "django-crispy-forms";
@@ -19,7 +19,7 @@ buildPythonPackage {
     export sourceRoot=source-
   '';
 
-  checkInputs = [ pytest pytest-django django ];
+  checkInputs = [ pytest_4 pytest-django django ];
 
   checkPhase = ''
     PYTHONPATH="$(pwd):$PYTHONPATH" \
diff --git a/pkgs/development/python-modules/pytest/2.nix b/pkgs/development/python-modules/pytest/4.nix
similarity index 100%
rename from pkgs/development/python-modules/pytest/2.nix
rename to pkgs/development/python-modules/pytest/4.nix

From c6f257265db30a24f81cb0752578028c98b42cbf Mon Sep 17 00:00:00 2001
From: Maximilian Bosch <maximilian@mbosch.me>
Date: Sat, 14 Sep 2019 14:22:01 +0200
Subject: [PATCH 133/152] documize-community: 3.2.0 -> 3.3.0

https://github.com/documize/community/releases/tag/v3.3.0
---
 pkgs/servers/documize-community/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/documize-community/default.nix b/pkgs/servers/documize-community/default.nix
index 317783e4f8ff..f06315b899d7 100644
--- a/pkgs/servers/documize-community/default.nix
+++ b/pkgs/servers/documize-community/default.nix
@@ -2,13 +2,13 @@
 
 buildGoPackage rec {
   pname = "documize-community";
-  version = "3.2.0";
+  version = "3.3.0";
 
   src = fetchFromGitHub {
     owner = "documize";
     repo = "community";
     rev = "v${version}";
-    sha256 = "13r0x1mbprhk19a1cikq8cl553xdrxin9arw90am69iv6rcps3w3";
+    sha256 = "1qkc82bvpmgcil88630pnp1irc2w8rzlh702vl0v67vfmawpxpjq";
   };
 
   goPackagePath = "github.com/documize/community";

From ea3ea651f95b492ebb9b516146a684e0e63a15a0 Mon Sep 17 00:00:00 2001
From: Daniel Schaefer <git@danielschaefer.me>
Date: Sat, 14 Sep 2019 14:17:08 +0200
Subject: [PATCH 134/152] ape: 6.7-131003 -> 2019-08-10

---
 pkgs/applications/misc/ape/default.nix | 16 ++++++++--------
 1 file changed, 8 insertions(+), 8 deletions(-)

diff --git a/pkgs/applications/misc/ape/default.nix b/pkgs/applications/misc/ape/default.nix
index e78ba2df9993..0d8ebccb3d02 100644
--- a/pkgs/applications/misc/ape/default.nix
+++ b/pkgs/applications/misc/ape/default.nix
@@ -1,33 +1,33 @@
 { stdenv, swiProlog, makeWrapper,
   fetchFromGitHub,
-  lexicon ? "lexicon/clex_lexicon.pl",
+  lexicon ? "prolog/lexicon/clex_lexicon.pl",
   pname ? "ape",
   description ? "Parser for Attempto Controlled English (ACE)",
   license ? with stdenv.lib; licenses.lgpl3
   }:
 
 stdenv.mkDerivation rec {
-  name = "${pname}-${version}";
-  version = "6.7-131003";
+  inherit pname;
+  version = "2019-08-10";
 
   buildInputs = [ swiProlog makeWrapper ];
 
   src = fetchFromGitHub {
      owner = "Attempto";
      repo = "APE";
-     rev = version;
-     sha256 = "0cw47qjg4896kw3vps6rfs02asvscsqvcfdiwgfmqb3hvykb1sdx";
+     rev = "113b81621262d7a395779465cb09397183e6f74c";
+     sha256 = "0xyvna2fbr18hi5yvm0zwh77q02dfna1g4g53z9mn2rmlfn2mhjh";
   };
 
   patchPhase = ''
     # We move the file first to avoid "same file" error in the default case
     cp ${lexicon} new_lexicon.pl
-    rm lexicon/clex_lexicon.pl
-    cp new_lexicon.pl lexicon/clex_lexicon.pl
+    rm prolog/lexicon/clex_lexicon.pl
+    cp new_lexicon.pl prolog/lexicon/clex_lexicon.pl
   '';
 
   buildPhase = ''
-    make build
+    make SHELL=${stdenv.shell} build
   '';
 
   installPhase = ''

From d66430be79a91c64be85e6e8f0b622764ba89e13 Mon Sep 17 00:00:00 2001
From: Ivan Kozik <ivan@ludios.org>
Date: Tue, 10 Sep 2019 19:38:21 +0000
Subject: [PATCH 135/152] chromium: 76.0.3809.132 -> 77.0.3865.75

CVE-2019-5870 CVE-2019-5871 CVE-2019-5872 CVE-2019-5873
CVE-2019-5874 CVE-2019-5875 CVE-2019-5876 CVE-2019-5877
CVE-2019-5878 CVE-2019-5879 CVE-2019-5880 CVE-2019-5881
CVE-2019-13659 CVE-2019-13660 CVE-2019-13661 CVE-2019-13662
CVE-2019-13663 CVE-2019-13664 CVE-2019-13665 CVE-2019-13666
CVE-2019-13667 CVE-2019-13668 CVE-2019-13669 CVE-2019-13670
CVE-2019-13671 CVE-2019-13673 CVE-2019-13674 CVE-2019-13675
CVE-2019-13676 CVE-2019-13677 CVE-2019-13678 CVE-2019-13679
CVE-2019-13680 CVE-2019-13681 CVE-2019-13682 CVE-2019-13683
---
 .../networking/browsers/chromium/upstream-info.nix   | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/pkgs/applications/networking/browsers/chromium/upstream-info.nix b/pkgs/applications/networking/browsers/chromium/upstream-info.nix
index 14799e9f96cc..df2ce798f1fb 100644
--- a/pkgs/applications/networking/browsers/chromium/upstream-info.nix
+++ b/pkgs/applications/networking/browsers/chromium/upstream-info.nix
@@ -1,9 +1,9 @@
 # This file is autogenerated from update.sh in the same directory.
 {
   beta = {
-    sha256 = "0m7xdpi1f2a33csd7bsp91g5klz0hmr83ksfwsd2fki3iipvfs4w";
-    sha256bin64 = "1b4cyf4v55sy52mxxl8d70abg5ck5k45jaqdjsjw7dvh3s2x4bwp";
-    version = "77.0.3865.42";
+    sha256 = "12cp24h93b48pwfywf5b6qvjdlhxrhp87qdaqbfcn6g787r2z5gb";
+    sha256bin64 = "0d9w869qqwbmw3qjvxkfm37i7dvrgmrwm5y96sm1dg2jnxqj4bdz";
+    version = "77.0.3865.75";
   };
   dev = {
     sha256 = "0x5r6xqwiggwyzbinm252xc1n3f9r7cmmzj6assi4v1nsispdh2k";
@@ -11,8 +11,8 @@
     version = "78.0.3887.7";
   };
   stable = {
-    sha256 = "0hajwjf7swlgh1flpf8ljfrb2zhmcpzvrigvvxqd36g3nm04cknm";
-    sha256bin64 = "0hdsla8i3q0zbczia64ghqsf420alcc31xdishx1sv48x3rlrxkk";
-    version = "76.0.3809.132";
+    sha256 = "12cp24h93b48pwfywf5b6qvjdlhxrhp87qdaqbfcn6g787r2z5gb";
+    sha256bin64 = "1wp5g09czyslkkhw3nhbp39fxfcz0pprsgj8h0aggghpdbvzph3d";
+    version = "77.0.3865.75";
   };
 }

From 740d4c22ecccf94b5b55c449437069a96a005c6c Mon Sep 17 00:00:00 2001
From: Daniel Fullmer <danielrf12@gmail.com>
Date: Fri, 13 Sep 2019 15:53:03 -0400
Subject: [PATCH 136/152] k2pdfopt: Fix build and clean up

---
 pkgs/applications/misc/k2pdfopt/default.nix   |   62 +-
 .../k2pdfopt/leptonica-CVE-2018-3836.patch    |   95 --
 .../misc/k2pdfopt/leptonica.patch             |  254 ++++
 pkgs/applications/misc/k2pdfopt/mupdf.patch   | 1060 +++++++++++++++++
 .../misc/k2pdfopt/tesseract.patch             |  678 ++++++++++-
 5 files changed, 1991 insertions(+), 158 deletions(-)
 delete mode 100644 pkgs/applications/misc/k2pdfopt/leptonica-CVE-2018-3836.patch
 create mode 100644 pkgs/applications/misc/k2pdfopt/leptonica.patch
 create mode 100644 pkgs/applications/misc/k2pdfopt/mupdf.patch

diff --git a/pkgs/applications/misc/k2pdfopt/default.nix b/pkgs/applications/misc/k2pdfopt/default.nix
index 9391fe88c5ea..58bd200e713c 100644
--- a/pkgs/applications/misc/k2pdfopt/default.nix
+++ b/pkgs/applications/misc/k2pdfopt/default.nix
@@ -36,67 +36,19 @@ stdenv.mkDerivation rec {
 
   buildInputs =
   let
+    #  The patches below were constructed by taking the files from k2pdfopt in
+    #  the {mupdf,leptonica,tesseract}_mod/ directories, replacing the
+    #  corresponding files in the respective source trees, resolving any errors
+    #  with more recent versions of these depencencies, and running diff.
     mupdf_modded = mupdf.overrideAttrs (attrs: {
-      # Excluded the pdf-*.c files, since they mostly just broke the #includes
-      prePatch = ''
-        cp ${src}/mupdf_mod/{font,stext-device,string}.c source/fitz/
-        cp ${src}/mupdf_mod/font-win32.c source/pdf/
-      '';
+      patches = attrs.patches ++ [ ./mupdf.patch ]; # Last verified with mupdf 1.14.0
     });
-
     leptonica_modded = leptonica.overrideAttrs (attrs: {
-      name = "leptonica-1.74.4";
-      # Modified source files apply to this particular version of leptonica
-      version = "1.74.4";
-
-      src = fetchurl {
-        url = "http://www.leptonica.org/source/leptonica-1.74.4.tar.gz";
-        sha256 = "0fw39amgyv8v6nc7x8a4c7i37dm04i6c5zn62d24bgqnlhk59hr9";
-      };
-
-      prePatch = ''
-        cp ${src}/leptonica_mod/{allheaders.h,dewarp2.c,leptwin.c} src/
-      '';
-      patches = [
-        # stripped down copy of upstream commit b88c821f8d347bce0aea86d606c710303919f3d2
-        ./leptonica-CVE-2018-3836.patch
-        (fetchpatch {
-          # CVE-2018-7186
-          url = "https://github.com/DanBloomberg/leptonica/commit/"
-              + "ee301cb2029db8a6289c5295daa42bba7715e99a.patch";
-          sha256 = "0cgb7mvz2px1rg5i80wk1wxxjvzjga617d8q6j7qygkp7jm6495d";
-        })
-        (fetchpatch {
-          # CVE-2018-7247
-          url = "https://github.com/DanBloomberg/leptonica/commit/"
-              + "c1079bb8e77cdd426759e466729917ca37a3ed9f.patch";
-          sha256 = "1z4iac5gwqggh7aa8cvyp6nl9fwd1v7wif26caxc9y5qr3jj34qf";
-        })
-        (fetchpatch {
-          # CVE-2018-7440
-          url = "https://github.com/DanBloomberg/leptonica/commit/"
-              + "49ecb6c2dfd6ed5078c62f4a8eeff03e3beced3b.patch";
-          sha256 = "1hjmva98iaw9xj7prg7aimykyayikcwnk4hk0380007hqb35lqmy";
-        })
-      ];
+      patches = [ ./leptonica.patch ]; # Last verified with leptonica 1.78.0
     });
     tesseract_modded = tesseract4.override {
       tesseractBase = tesseract4.tesseractBase.overrideAttrs (_: {
-        prePatch = ''
-          cp ${src}/tesseract_mod/baseapi.{h,cpp} src/api/
-          cp ${src}/tesseract_mod/ccutil.{h,cpp} src/ccutil/
-          cp ${src}/tesseract_mod/genericvector.h src/ccutil/
-          cp ${src}/tesseract_mod/input.cpp src/lstm/
-          cp ${src}/tesseract_mod/lstmrecognizer.cpp src/lstm/
-          cp ${src}/tesseract_mod/mainblk.cpp src/ccutil/
-          cp ${src}/tesseract_mod/params.cpp src/ccutil/
-          cp ${src}/tesseract_mod/serialis.{h,cpp} src/ccutil/
-          cp ${src}/tesseract_mod/tesscapi.cpp src/api/
-          cp ${src}/tesseract_mod/tessdatamanager.cpp src/ccstruct/
-          cp ${src}/tesseract_mod/tessedit.cpp src/ccmain/
-          cp ${src}/include_mod/{tesseract.h,leptonica.h} src/api/
-        '';
-        patches = [ ./tesseract.patch ];
+        patches = [ ./tesseract.patch ]; # Last verified with tesseract 1.4
       });
     };
   in
diff --git a/pkgs/applications/misc/k2pdfopt/leptonica-CVE-2018-3836.patch b/pkgs/applications/misc/k2pdfopt/leptonica-CVE-2018-3836.patch
deleted file mode 100644
index f1b4170fbaae..000000000000
--- a/pkgs/applications/misc/k2pdfopt/leptonica-CVE-2018-3836.patch
+++ /dev/null
@@ -1,95 +0,0 @@
---- a/src/allheaders.h
-+++ b/src/allheaders.h
-@@ -2600,6 +2600,7 @@
- LEPT_DLL extern char * stringReverse ( const char *src );
- LEPT_DLL extern char * strtokSafe ( char *cstr, const char *seps, char **psaveptr );
- LEPT_DLL extern l_int32 stringSplitOnToken ( char *cstr, const char *seps, char **phead, char **ptail );
-+LEPT_DLL extern l_int32 stringCheckForChars ( const char *src, const char *chars, l_int32 *pfound );
- LEPT_DLL extern char * stringRemoveChars ( const char *src, const char *remchars );
- LEPT_DLL extern l_int32 stringFindSubstr ( const char *src, const char *sub, l_int32 *ploc );
- LEPT_DLL extern char * stringReplaceSubstr ( const char *src, const char *sub1, const char *sub2, l_int32 *pfound, l_int32 *ploc );
---- a/src/gplot.c
-+++ b/src/gplot.c
-@@ -141,9 +141,10 @@
-             const char  *xlabel,
-             const char  *ylabel)
- {
--char   *newroot;
--char    buf[L_BUF_SIZE];
--GPLOT  *gplot;
-+char    *newroot;
-+char     buf[L_BUF_SIZE];
-+l_int32  badchar;
-+GPLOT   *gplot;
- 
-     PROCNAME("gplotCreate");
- 
-@@ -152,6 +153,9 @@
-     if (outformat != GPLOT_PNG && outformat != GPLOT_PS &&
-         outformat != GPLOT_EPS && outformat != GPLOT_LATEX)
-         return (GPLOT *)ERROR_PTR("outformat invalid", procName, NULL);
-+    stringCheckForChars(rootname, "`;&|><\"?*", &badchar);
-+    if (badchar)  /* danger of command injection */
-+        return (GPLOT *)ERROR_PTR("invalid rootname", procName, NULL);
- 
-     if ((gplot = (GPLOT *)LEPT_CALLOC(1, sizeof(GPLOT))) == NULL)
-         return (GPLOT *)ERROR_PTR("gplot not made", procName, NULL);
---- a/src/utils2.c
-+++ b/src/utils2.c
-@@ -42,6 +42,7 @@
-  *           l_int32    stringSplitOnToken()
-  *
-  *       Find and replace string and array procs
-+ *           l_int32    stringCheckForChars()
-  *           char      *stringRemoveChars()
-  *           l_int32    stringFindSubstr()
-  *           char      *stringReplaceSubstr()
-@@ -701,6 +702,48 @@
- /*--------------------------------------------------------------------*
-  *                       Find and replace procs                       *
-  *--------------------------------------------------------------------*/
-+/*!
-+ * \brief   stringCheckForChars()
-+ *
-+ * \param[in]    src      input string; can be of zero length
-+ * \param[in]    chars    string of chars to be searched for in %src
-+ * \param[out]   pfound   1 if any characters are found; 0 otherwise
-+ * \return  0 if OK, 1 on error
-+ *
-+ * <pre>
-+ * Notes:
-+ *      (1) This can be used to sanitize an operation by checking for
-+ *          special characters that don't belong in a string.
-+ * </pre>
-+ */
-+l_int32
-+stringCheckForChars(const char  *src,
-+                    const char  *chars,
-+                    l_int32     *pfound)
-+{
-+char     ch;
-+l_int32  i, n;
-+
-+    PROCNAME("stringCheckForChars");
-+
-+    if (!pfound)
-+        return ERROR_INT("&found not defined", procName, 1);
-+    *pfound = FALSE;
-+    if (!src || !chars)
-+        return ERROR_INT("src and chars not both defined", procName, 1);
-+
-+    n = strlen(src);
-+    for (i = 0; i < n; i++) {
-+        ch = src[i];
-+        if (strchr(chars, ch)) {
-+            *pfound = TRUE;
-+            break;
-+        }
-+    }
-+    return 0;
-+}
-+
-+
- /*!
-  * \brief   stringRemoveChars()
-  *
diff --git a/pkgs/applications/misc/k2pdfopt/leptonica.patch b/pkgs/applications/misc/k2pdfopt/leptonica.patch
new file mode 100644
index 000000000000..dfab99fd0130
--- /dev/null
+++ b/pkgs/applications/misc/k2pdfopt/leptonica.patch
@@ -0,0 +1,254 @@
+From 8c11a20925686855023df90ed477957c7d7fe91e Mon Sep 17 00:00:00 2001
+From: Daniel Fullmer <danielrf12@gmail.com>
+Date: Fri, 13 Sep 2019 15:54:21 -0400
+Subject: [PATCH] Willus mod for k2pdfopt
+
+---
+ src/allheaders.h |   4 ++
+ src/dewarp2.c    | 106 ++++++++++++++++++++++++++++++++++++++++++-----
+ src/leptwin.c    |   6 ++-
+ 3 files changed, 104 insertions(+), 12 deletions(-)
+
+diff --git a/src/allheaders.h b/src/allheaders.h
+index e68eff1..b3cc729 100644
+--- a/src/allheaders.h
++++ b/src/allheaders.h
+@@ -669,6 +669,10 @@ LEPT_DLL extern L_DEWARPA * dewarpaReadMem ( const l_uint8 *data, size_t size );
+ LEPT_DLL extern l_ok dewarpaWrite ( const char *filename, L_DEWARPA *dewa );
+ LEPT_DLL extern l_ok dewarpaWriteStream ( FILE *fp, L_DEWARPA *dewa );
+ LEPT_DLL extern l_ok dewarpaWriteMem ( l_uint8 **pdata, size_t *psize, L_DEWARPA *dewa );
++/* WILLUS MOD */
++    LEPT_DLL extern l_int32 dewarpBuildPageModel_ex ( L_DEWARP *dew, const char *debugfile,l_int32 fit_order );
++    LEPT_DLL extern l_int32 dewarpFindVertDisparity_ex ( L_DEWARP *dew, PTAA *ptaa, l_int32 rotflag,l_int32 fit_order );
++    LEPT_DLL extern l_int32 dewarpBuildLineModel_ex ( L_DEWARP *dew, l_int32 opensize, const char *debugfile,l_int32 fit_order );
+ LEPT_DLL extern l_ok dewarpBuildPageModel ( L_DEWARP *dew, const char *debugfile );
+ LEPT_DLL extern l_ok dewarpFindVertDisparity ( L_DEWARP *dew, PTAA *ptaa, l_int32 rotflag );
+ LEPT_DLL extern l_ok dewarpFindHorizDisparity ( L_DEWARP *dew, PTAA *ptaa );
+diff --git a/src/dewarp2.c b/src/dewarp2.c
+index 220eec1..2e29500 100644
+--- a/src/dewarp2.c
++++ b/src/dewarp2.c
+@@ -144,9 +144,17 @@ static const l_float32   L_ALLOWED_W_FRACT = 0.05;  /* no bigger */
+  *          longest textlines.
+  * </pre>
+  */
++/* WILLUS MOD */
+ l_ok
+-dewarpBuildPageModel(L_DEWARP    *dew,
+-                     const char  *debugfile)
++dewarpBuildPageModel(L_DEWARP *dew,const char *debugfile)
++{
++return(dewarpBuildPageModel_ex(dew,debugfile,2));
++}
++
++l_ok
++dewarpBuildPageModel_ex(L_DEWARP    *dew,
++                     const char  *debugfile,
++                     l_int32 fit_order)
+ {
+ l_int32  linecount, topline, botline, ret;
+ PIX     *pixs, *pix1, *pix2, *pix3;
+@@ -225,7 +233,7 @@ PTAA    *ptaa1, *ptaa2;
+         /* Get the sampled vertical disparity from the textline centers.
+          * The disparity array will push pixels vertically so that each
+          * textline is flat and centered at the y-position of the mid-point. */
+-    if (dewarpFindVertDisparity(dew, ptaa2, 0) != 0) {
++    if (dewarpFindVertDisparity_ex(dew, ptaa2, 0, fit_order) != 0) {
+         L_WARNING("vertical disparity not built\n", procName);
+         ptaaDestroy(&ptaa2);
+         return 1;
+@@ -290,13 +298,24 @@ PTAA    *ptaa1, *ptaa2;
+  *          a pdf.  Non-pix debug output goes to /tmp.
+  * </pre>
+  */
++/* WILLUS MOD */
+ l_ok
+ dewarpFindVertDisparity(L_DEWARP  *dew,
+                         PTAA      *ptaa,
+                         l_int32    rotflag)
+ {
++return(dewarpFindVertDisparity_ex(dew,ptaa,rotflag,2));
++}
++/* WILLUS MOD -- add cubic and quartic fits and ..._ex functions */
++l_int32
++dewarpFindVertDisparity_ex(L_DEWARP  *dew,
++                        PTAA      *ptaa,
++                        l_int32    rotflag,
++                        l_int32    fit_order)
++{
+ l_int32     i, j, nlines, npts, nx, ny, sampling;
+-l_float32   c0, c1, c2, x, y, midy, val, medval, meddev, minval, maxval;
++/* WILLUS MOD */
++l_float32   c0, c1, c2, c3, c4, x, y, midy, val, medval, meddev, minval, maxval;
+ l_float32  *famidys;
+ NUMA       *nax, *nafit, *nacurve0, *nacurve1, *nacurves;
+ NUMA       *namidy, *namidys, *namidysi;
+@@ -304,11 +323,22 @@ PIX        *pix1, *pix2, *pixcirc, *pixdb;
+ PTA        *pta, *ptad, *ptacirc;
+ PTAA       *ptaa0, *ptaa1, *ptaa2, *ptaa3, *ptaa4, *ptaa5, *ptaat;
+ FPIX       *fpix;
++/* WILLUS MOD */
++l_int32 fit_order1,fit_order2;
+ 
+     PROCNAME("dewarpFindVertDisparity");
+ 
+     if (!dew)
+         return ERROR_INT("dew not defined", procName, 1);
++/* WILLUS MOD */
++    if (fit_order < 10)
++        fit_order1 = fit_order2 = fit_order;
++    else
++        {
++        fit_order1=fit_order % 10;
++        fit_order2=fit_order / 10;
++        fit_order2=fit_order2 % 10;
++        }
+     dew->vsuccess = 0;
+     if (!ptaa)
+         return ERROR_INT("ptaa not defined", procName, 1);
+@@ -331,12 +361,32 @@ FPIX       *fpix;
+     pixdb = (rotflag) ? pixRotateOrth(dew->pixs, 1) : pixClone(dew->pixs);
+     for (i = 0; i < nlines; i++) {  /* for each line */
+         pta = ptaaGetPta(ptaa, i, L_CLONE);
+-        ptaGetQuadraticLSF(pta, &c2, &c1, &c0, NULL);
+-        numaAddNumber(nacurve0, c2);
++/* WILLUS MOD */
++if (fit_order1>3)
++    {
++    ptaGetQuarticLSF(pta, &c4, &c3, &c2, &c1, &c0, NULL);
++    numaAddNumber(nacurve0, c4);
++    }
++else if (fit_order1==3)
++    {
++    ptaGetCubicLSF(pta, &c3, &c2, &c1, &c0, NULL);
++    numaAddNumber(nacurve0, c3);
++    }
++else
++    {
++    ptaGetQuadraticLSF(pta, &c2, &c1, &c0, NULL);
++    numaAddNumber(nacurve0, c2);
++    }
+         ptad = ptaCreate(nx);
+         for (j = 0; j < nx; j++) {  /* uniformly sampled in x */
+              x = j * sampling;
+-             applyQuadraticFit(c2, c1, c0, x, &y);
++/* WILLUS MOD */
++if (fit_order1>3)
++    applyQuarticFit(c4, c3, c2, c1, c0, x, &y);
++else if (fit_order1==3)
++    applyCubicFit(c3, c2, c1, c0, x, &y);
++else
++    applyQuadraticFit(c2, c1, c0, x, &y);
+              ptaAddPt(ptad, x, y);
+         }
+         ptaaAddPta(ptaa0, ptad, L_INSERT);
+@@ -350,7 +400,13 @@ FPIX       *fpix;
+         for (i = 0; i < nlines; i++) {
+             pta = ptaaGetPta(ptaa, i, L_CLONE);
+             ptaGetArrays(pta, &nax, NULL);
+-            ptaGetQuadraticLSF(pta, NULL, NULL, NULL, &nafit);
++/* WILLUS MOD */
++if (fit_order1>3)
++ptaGetQuarticLSF(pta, NULL, NULL, NULL, NULL, NULL, &nafit);
++else if (fit_order1==3)
++ptaGetCubicLSF(pta, NULL, NULL, NULL, NULL, &nafit);
++else
++ptaGetQuadraticLSF(pta, NULL, NULL, NULL, &nafit);
+             ptad = ptaCreateFromNuma(nax, nafit);
+             ptaaAddPta(ptaat, ptad, L_INSERT);
+             ptaDestroy(&pta);
+@@ -494,11 +550,24 @@ FPIX       *fpix;
+     ptaa5 = ptaaCreate(nx);  /* uniformly sampled across full height of image */
+     for (j = 0; j < nx; j++) {  /* for each column */
+         pta = ptaaGetPta(ptaa4, j, L_CLONE);
+-        ptaGetQuadraticLSF(pta, &c2, &c1, &c0, NULL);
++/* WILLUS MOD */
++/* Order higher than 2 can cause a little craziness here. */
++if (fit_order2>3)
++    ptaGetQuarticLSF(pta, &c4, &c3, &c2, &c1, &c0, NULL);
++else if (fit_order2==3)
++    ptaGetCubicLSF(pta, &c3, &c2, &c1, &c0, NULL);
++else
++    ptaGetQuadraticLSF(pta, &c2, &c1, &c0, NULL);
+         ptad = ptaCreate(ny);
+         for (i = 0; i < ny; i++) {  /* uniformly sampled in y */
+              y = i * sampling;
+-             applyQuadraticFit(c2, c1, c0, y, &val);
++/* WILLUS MOD */
++if (fit_order2>3)
++    applyQuarticFit(c4, c3, c2, c1, c0, y, &val);
++else if (fit_order2==3)
++    applyCubicFit(c3, c2, c1, c0, y, &val);
++else
++    applyQuadraticFit(c2, c1, c0, y, &val);
+              ptaAddPt(ptad, y, val);
+         }
+         ptaaAddPta(ptaa5, ptad, L_INSERT);
+@@ -1602,11 +1671,21 @@ FPIX      *fpix;
+  *          See notes there.
+  * </pre>
+  */
++/* WILLUS MOD */
+ l_ok
+ dewarpBuildLineModel(L_DEWARP    *dew,
+                      l_int32      opensize,
+                      const char  *debugfile)
+ {
++return(dewarpBuildLineModel_ex(dew,opensize,debugfile,2));
++}
++
++l_int32
++dewarpBuildLineModel_ex(L_DEWARP    *dew,
++                     l_int32      opensize,
++                     const char  *debugfile,
++                     l_int32 fit_order)
++{
+ char     buf[64];
+ l_int32  i, j, bx, by, ret, nlines;
+ BOXA    *boxa;
+@@ -1695,6 +1774,8 @@ PTAA    *ptaa1, *ptaa2;
+ 
+             /* Remove all lines that are not at least 0.75 times the length
+              * of the longest line. */
++/* WILLUS MOD */
++/*
+         ptaa2 = dewarpRemoveShortLines(pix, ptaa1, 0.75, DEBUG_SHORT_LINES);
+         if (debugfile) {
+             pix1 = pixConvertTo32(pix);
+@@ -1704,6 +1785,8 @@ PTAA    *ptaa1, *ptaa2;
+             pixDestroy(&pix1);
+             pixDestroy(&pix2);
+         }
++*/
++ptaa2=ptaa1;
+         ptaaDestroy(&ptaa1);
+         nlines = ptaaGetCount(ptaa2);
+         if (nlines < dew->minlines) {
+@@ -1717,7 +1800,8 @@ PTAA    *ptaa1, *ptaa2;
+              * centers.  The disparity array will push pixels vertically
+              * so that each line is flat and centered at the y-position
+              * of the mid-point. */
+-        ret = dewarpFindVertDisparity(dew, ptaa2, 1 - i);
++/* WILLUS MOD */
++        ret = dewarpFindVertDisparity_ex(dew, ptaa2, 1 - i, fit_order);
+ 
+             /* If i == 0, move the result to the horizontal disparity,
+              * rotating it back by -90 degrees. */
+diff --git a/src/leptwin.c b/src/leptwin.c
+index 72643a0..573d33e 100644
+--- a/src/leptwin.c
++++ b/src/leptwin.c
+@@ -364,5 +364,9 @@ PIXCMAP   *cmap;
+ 
+     return hBitmap;
+ }
+-
++#else
++/* willus mod: Avoid weird issue with OS/X library archiver when there are no symbols */
++int leptwin_my_empty_func(void);
++int leptwin_my_empty_func(void)
++{return(0);}
+ #endif   /* _WIN32 */
+-- 
+2.22.0
+
diff --git a/pkgs/applications/misc/k2pdfopt/mupdf.patch b/pkgs/applications/misc/k2pdfopt/mupdf.patch
new file mode 100644
index 000000000000..f7c04d42a71d
--- /dev/null
+++ b/pkgs/applications/misc/k2pdfopt/mupdf.patch
@@ -0,0 +1,1060 @@
+From 3d763f84872351c250ffea26150e73b02b8f4c6f Mon Sep 17 00:00:00 2001
+From: Daniel Fullmer <danielrf12@gmail.com>
+Date: Fri, 13 Sep 2019 15:11:45 -0400
+Subject: [PATCH] Willus mod for k2pdfopt
+
+---
+ source/fitz/filter-basic.c |   3 +
+ source/fitz/font-win32.c   | 866 +++++++++++++++++++++++++++++++++++++
+ source/fitz/font.c         |   3 +
+ source/fitz/stext-device.c |   5 +
+ source/fitz/string.c       |   5 +
+ source/pdf/pdf-annot.c     |  14 +-
+ source/pdf/pdf-link.c      |   3 +
+ source/pdf/pdf-parse.c     |   5 +
+ source/pdf/pdf-xref.c      |   9 +
+ 9 files changed, 912 insertions(+), 1 deletion(-)
+ create mode 100644 source/fitz/font-win32.c
+
+diff --git a/source/fitz/filter-basic.c b/source/fitz/filter-basic.c
+index 0713a62e7..b8ef4d292 100644
+--- a/source/fitz/filter-basic.c
++++ b/source/fitz/filter-basic.c
+@@ -259,7 +259,10 @@ look_for_endstream:
+ 	if (!state->warned)
+ 	{
+ 		state->warned = 1;
++/* willus mod -- no warning */
++/*
+ 		fz_warn(ctx, "PDF stream Length incorrect");
++*/
+ 	}
+ 	return *stm->rp++;
+ }
+diff --git a/source/fitz/font-win32.c b/source/fitz/font-win32.c
+new file mode 100644
+index 000000000..45de8cfd3
+--- /dev/null
++++ b/source/fitz/font-win32.c
+@@ -0,0 +1,866 @@
++/*
++** Routines to access MS Windows system fonts.
++** From sumatra PDF distro.
++** Modified for MuPDF v1.9a by willus.com
++*/
++#include "mupdf/pdf.h"
++
++/*
++	Which fonts are embedded is based on a few preprocessor definitions.
++
++	The base 14 fonts are always embedded.
++	For CJK font substitution we embed DroidSansFallback.
++
++	Set NOCJK to skip all CJK support (this also omits embedding the CJK CMaps)
++	Set NOCJKFONT to skip the embedded CJK font.
++	Set NOCJKFULL to embed a smaller CJK font without CJK Extension A support.
++*/
++
++#ifdef NOCJK
++#define NOCJKFONT
++#endif
++
++/* SumatraPDF: also load fonts included with Windows */
++#ifdef _WIN32
++
++#ifndef UNICODE
++#define UNICODE
++#endif
++#ifndef _UNICODE
++#define _UNICODE
++#endif
++
++#include <windows.h>
++
++// TODO: Use more of FreeType for TTF parsing (for performance reasons,
++//       the fonts can't be parsed completely, though)
++#include <ft2build.h>
++#include FT_TRUETYPE_IDS_H
++#include FT_TRUETYPE_TAGS_H
++
++#define TTC_VERSION1	0x00010000
++#define TTC_VERSION2	0x00020000
++
++#define MAX_FACENAME	128
++
++// Note: the font face must be the first field so that the structure
++//       can be treated like a simple string for searching
++typedef struct pdf_fontmapMS_s
++{
++	char fontface[MAX_FACENAME];
++	char fontpath[MAX_PATH];
++	int index;
++} pdf_fontmapMS;
++
++typedef struct pdf_fontlistMS_s
++{
++	pdf_fontmapMS *fontmap;
++	int len;
++	int cap;
++} pdf_fontlistMS;
++
++typedef struct _tagTT_OFFSET_TABLE
++{
++	ULONG	uVersion;
++	USHORT	uNumOfTables;
++	USHORT	uSearchRange;
++	USHORT	uEntrySelector;
++	USHORT	uRangeShift;
++} TT_OFFSET_TABLE;
++
++typedef struct _tagTT_TABLE_DIRECTORY
++{
++	ULONG	uTag;				//table name
++	ULONG	uCheckSum;			//Check sum
++	ULONG	uOffset;			//Offset from beginning of file
++	ULONG	uLength;			//length of the table in bytes
++} TT_TABLE_DIRECTORY;
++
++typedef struct _tagTT_NAME_TABLE_HEADER
++{
++	USHORT	uFSelector;			//format selector. Always 0
++	USHORT	uNRCount;			//Name Records count
++	USHORT	uStorageOffset;		//Offset for strings storage, from start of the table
++} TT_NAME_TABLE_HEADER;
++
++typedef struct _tagTT_NAME_RECORD
++{
++	USHORT	uPlatformID;
++	USHORT	uEncodingID;
++	USHORT	uLanguageID;
++	USHORT	uNameID;
++	USHORT	uStringLength;
++	USHORT	uStringOffset;	//from start of storage area
++} TT_NAME_RECORD;
++
++typedef struct _tagFONT_COLLECTION
++{
++	ULONG	Tag;
++	ULONG	Version;
++	ULONG	NumFonts;
++} FONT_COLLECTION;
++
++static struct {
++	char *name;
++	char *pattern;
++} baseSubstitutes[] = {
++	{ "Courier", "CourierNewPSMT" },
++	{ "Courier-Bold", "CourierNewPS-BoldMT" },
++	{ "Courier-Oblique", "CourierNewPS-ItalicMT" },
++	{ "Courier-BoldOblique", "CourierNewPS-BoldItalicMT" },
++	{ "Helvetica", "ArialMT" },
++	{ "Helvetica-Bold", "Arial-BoldMT" },
++	{ "Helvetica-Oblique", "Arial-ItalicMT" },
++	{ "Helvetica-BoldOblique", "Arial-BoldItalicMT" },
++	{ "Times-Roman", "TimesNewRomanPSMT" },
++	{ "Times-Bold", "TimesNewRomanPS-BoldMT" },
++	{ "Times-Italic", "TimesNewRomanPS-ItalicMT" },
++	{ "Times-BoldItalic", "TimesNewRomanPS-BoldItalicMT" },
++	{ "Symbol", "SymbolMT" },
++};
++static const char *base_font_names[][10] =
++{
++	{ "Courier", "CourierNew", "CourierNewPSMT", NULL },
++	{ "Courier-Bold", "CourierNew,Bold", "Courier,Bold",
++		"CourierNewPS-BoldMT", "CourierNew-Bold", NULL },
++	{ "Courier-Oblique", "CourierNew,Italic", "Courier,Italic",
++		"CourierNewPS-ItalicMT", "CourierNew-Italic", NULL },
++	{ "Courier-BoldOblique", "CourierNew,BoldItalic", "Courier,BoldItalic",
++		"CourierNewPS-BoldItalicMT", "CourierNew-BoldItalic", NULL },
++	{ "Helvetica", "ArialMT", "Arial", NULL },
++	{ "Helvetica-Bold", "Arial-BoldMT", "Arial,Bold", "Arial-Bold",
++		"Helvetica,Bold", NULL },
++	{ "Helvetica-Oblique", "Arial-ItalicMT", "Arial,Italic", "Arial-Italic",
++		"Helvetica,Italic", "Helvetica-Italic", NULL },
++	{ "Helvetica-BoldOblique", "Arial-BoldItalicMT",
++		"Arial,BoldItalic", "Arial-BoldItalic",
++		"Helvetica,BoldItalic", "Helvetica-BoldItalic", NULL },
++	{ "Times-Roman", "TimesNewRomanPSMT", "TimesNewRoman",
++		"TimesNewRomanPS", NULL },
++	{ "Times-Bold", "TimesNewRomanPS-BoldMT", "TimesNewRoman,Bold",
++		"TimesNewRomanPS-Bold", "TimesNewRoman-Bold", NULL },
++	{ "Times-Italic", "TimesNewRomanPS-ItalicMT", "TimesNewRoman,Italic",
++		"TimesNewRomanPS-Italic", "TimesNewRoman-Italic", NULL },
++	{ "Times-BoldItalic", "TimesNewRomanPS-BoldItalicMT",
++		"TimesNewRoman,BoldItalic", "TimesNewRomanPS-BoldItalic",
++		"TimesNewRoman-BoldItalic", NULL },
++	{ "Symbol", "Symbol,Italic", "Symbol,Bold", "Symbol,BoldItalic",
++		"SymbolMT", "SymbolMT,Italic", "SymbolMT,Bold", "SymbolMT,BoldItalic", NULL },
++	{ "ZapfDingbats", NULL }
++};
++
++static pdf_fontlistMS fontlistMS =
++{
++	NULL,
++	0,
++	0,
++};
++static int strcmp_ignore_space(const char *a, const char *b);
++static const char *clean_font_name(const char *fontname);
++static const char *pdf_clean_base14_name(const char *fontname);
++
++static inline USHORT BEtoHs(USHORT x)
++{
++	BYTE *data = (BYTE *)&x;
++	return (data[0] << 8) | data[1];
++}
++
++static inline ULONG BEtoHl(ULONG x)
++{
++	BYTE *data = (BYTE *)&x;
++	return (data[0] << 24) | (data[1] << 16) | (data[2] << 8) | data[3];
++}
++
++static int strcmp_ignore_space(const char *a, const char *b)
++{
++	while (1)
++	{
++		while (*a == ' ')
++			a++;
++		while (*b == ' ')
++			b++;
++		if (*a != *b)
++			return 1;
++		if (*a == 0)
++			return *a != *b;
++		if (*b == 0)
++			return *a != *b;
++		a++;
++		b++;
++	}
++}
++
++/* A little bit more sophisticated name matching so that e.g. "EurostileExtended"
++   matches "EurostileExtended-Roman" or "Tahoma-Bold,Bold" matches "Tahoma-Bold" */
++static int
++lookup_compare(const void *elem1, const void *elem2)
++{
++	const char *val1 = elem1;
++	const char *val2 = elem2;
++	int len1 = strlen(val1);
++	int len2 = strlen(val2);
++
++	if (len1 != len2)
++	{
++		const char *rest = len1 > len2 ? val1 + len2 : val2 + len1;
++		if (',' == *rest || !_stricmp(rest, "-roman"))
++			return _strnicmp(val1, val2, fz_mini(len1, len2));
++	}
++
++	return _stricmp(val1, val2);
++}
++
++static void
++remove_spaces(char *srcDest)
++{
++	char *dest;
++
++	for (dest = srcDest; *srcDest; srcDest++)
++		if (*srcDest != ' ')
++			*dest++ = *srcDest;
++	*dest = '\0';
++}
++
++static int
++str_ends_with(const char *str, const char *end)
++{
++	size_t len1 = strlen(str);
++	size_t len2 = strlen(end);
++
++	return len1 >= len2 && !strcmp(str + len1 - len2, end);
++}
++
++static pdf_fontmapMS *
++pdf_find_windows_font_path(const char *fontname)
++{
++	return bsearch(fontname, fontlistMS.fontmap, fontlistMS.len, sizeof(pdf_fontmapMS), lookup_compare);
++}
++
++/* source and dest can be same */
++static void
++decode_unicode_BE(fz_context *ctx, char *source, int sourcelen, char *dest, int destlen)
++{
++	WCHAR *tmp;
++	int converted, i;
++
++	if (sourcelen % 2 != 0)
++		fz_throw(ctx, FZ_ERROR_GENERIC, "fonterror : invalid unicode string");
++
++	tmp = fz_malloc_array(ctx, sourcelen / 2 + 1, sizeof(WCHAR));
++	for (i = 0; i < sourcelen / 2; i++)
++		tmp[i] = BEtoHs(((WCHAR *)source)[i]);
++	tmp[sourcelen / 2] = '\0';
++
++	converted = WideCharToMultiByte(CP_UTF8, 0, tmp, -1, dest, destlen, NULL, NULL);
++	fz_free(ctx, tmp);
++	if (!converted)
++		fz_throw(ctx, FZ_ERROR_GENERIC, "fonterror : invalid unicode string");
++}
++
++static void
++decode_platform_string(fz_context *ctx, int platform, int enctype, char *source, int sourcelen, char *dest, int destlen)
++{
++	switch (platform)
++	{
++	case TT_PLATFORM_APPLE_UNICODE:
++		switch (enctype)
++		{
++		case TT_APPLE_ID_DEFAULT:
++		case TT_APPLE_ID_UNICODE_2_0:
++			decode_unicode_BE(ctx, source, sourcelen, dest, destlen);
++			return;
++		}
++		fz_throw(ctx, FZ_ERROR_GENERIC, "fonterror : unsupported encoding (%d/%d)", platform, enctype);
++	case TT_PLATFORM_MACINTOSH:
++		switch (enctype)
++		{
++		case TT_MAC_ID_ROMAN:
++			if (sourcelen + 1 > destlen)
++				fz_throw(ctx, FZ_ERROR_GENERIC, "fonterror : overlong fontname: %s", source);
++			// TODO: Convert to UTF-8 from what encoding?
++			memcpy(dest, source, sourcelen);
++			dest[sourcelen] = 0;
++			return;
++		}
++		fz_throw(ctx, FZ_ERROR_GENERIC, "fonterror : unsupported encoding (%d/%d)", platform, enctype);
++	case TT_PLATFORM_MICROSOFT:
++		switch (enctype)
++		{
++		case TT_MS_ID_SYMBOL_CS:
++		case TT_MS_ID_UNICODE_CS:
++		case TT_MS_ID_UCS_4:
++			decode_unicode_BE(ctx, source, sourcelen, dest, destlen);
++			return;
++		}
++		fz_throw(ctx, FZ_ERROR_GENERIC, "fonterror : unsupported encoding (%d/%d)", platform, enctype);
++	default:
++		fz_throw(ctx, FZ_ERROR_GENERIC, "fonterror : unsupported encoding (%d/%d)", platform, enctype);
++	}
++}
++
++static void
++grow_system_font_list(fz_context *ctx, pdf_fontlistMS *fl)
++{
++	int newcap;
++	pdf_fontmapMS *newitems;
++
++	if (fl->cap == 0)
++		newcap = 1024;
++	else
++		newcap = fl->cap * 2;
++
++	// use realloc/free for the fontmap, since the list can
++	// remain in memory even with all fz_contexts destroyed
++	newitems = realloc(fl->fontmap, newcap * sizeof(pdf_fontmapMS));
++	if (!newitems)
++		fz_throw(ctx, FZ_ERROR_GENERIC, "OOM in grow_system_font_list");
++	memset(newitems + fl->cap, 0, sizeof(pdf_fontmapMS) * (newcap - fl->cap));
++
++	fl->fontmap = newitems;
++	fl->cap = newcap;
++}
++
++static void
++append_mapping(fz_context *ctx, pdf_fontlistMS *fl, const char *facename, const char *path, int index)
++{
++	if (fl->len == fl->cap)
++		grow_system_font_list(ctx, fl);
++
++	if (fl->len >= fl->cap)
++		fz_throw(ctx, FZ_ERROR_GENERIC, "fonterror : fontlist overflow");
++
++	fz_strlcpy(fl->fontmap[fl->len].fontface, facename, sizeof(fl->fontmap[0].fontface));
++	fz_strlcpy(fl->fontmap[fl->len].fontpath, path, sizeof(fl->fontmap[0].fontpath));
++	fl->fontmap[fl->len].index = index;
++
++	++fl->len;
++}
++
++static void
++safe_read(fz_context *ctx, fz_stream *file, int offset, char *buf, int size)
++{
++	int n;
++	fz_seek(ctx, file, offset, 0);
++	n = fz_read(ctx, file, (unsigned char *)buf, size);
++	if (n != size)
++		fz_throw(ctx, FZ_ERROR_GENERIC, "safe_read: read %d, expected %d", n, size);
++}
++
++static void
++read_ttf_string(fz_context *ctx, fz_stream *file, int offset, TT_NAME_RECORD *ttRecordBE, char *buf, int size)
++{
++	char szTemp[MAX_FACENAME * 2];
++	// ignore empty and overlong strings
++	int stringLength = BEtoHs(ttRecordBE->uStringLength);
++	if (stringLength == 0 || stringLength >= sizeof(szTemp))
++		return;
++
++	safe_read(ctx, file, offset + BEtoHs(ttRecordBE->uStringOffset), szTemp, stringLength);
++	decode_platform_string(ctx, BEtoHs(ttRecordBE->uPlatformID),
++		BEtoHs(ttRecordBE->uEncodingID), szTemp, stringLength, buf, size);
++}
++
++static void
++makeFakePSName(char szName[MAX_FACENAME], const char *szStyle)
++{
++	// append the font's subfamily, unless it's a Regular font
++	if (*szStyle && _stricmp(szStyle, "Regular") != 0)
++	{
++		fz_strlcat(szName, "-", MAX_FACENAME);
++		fz_strlcat(szName, szStyle, MAX_FACENAME);
++	}
++	remove_spaces(szName);
++}
++
++static void
++parseTTF(fz_context *ctx, fz_stream *file, int offset, int index, const char *path)
++{
++	TT_OFFSET_TABLE ttOffsetTableBE;
++	TT_TABLE_DIRECTORY tblDirBE;
++	TT_NAME_TABLE_HEADER ttNTHeaderBE;
++	TT_NAME_RECORD ttRecordBE;
++
++	char szPSName[MAX_FACENAME] = { 0 };
++	char szTTName[MAX_FACENAME] = { 0 };
++	char szStyle[MAX_FACENAME] = { 0 };
++	char szCJKName[MAX_FACENAME] = { 0 };
++	int i, count, tblOffset;
++
++	safe_read(ctx, file, offset, (char *)&ttOffsetTableBE, sizeof(TT_OFFSET_TABLE));
++
++	// check if this is a TrueType font of version 1.0 or an OpenType font
++	if (BEtoHl(ttOffsetTableBE.uVersion) != TTC_VERSION1 &&
++		BEtoHl(ttOffsetTableBE.uVersion) != TTAG_OTTO)
++	{
++		fz_throw(ctx, FZ_ERROR_GENERIC, "fonterror : invalid font version %x", (unsigned int)BEtoHl(ttOffsetTableBE.uVersion));
++	}
++
++	// determine the name table's offset by iterating through the offset table
++	count = BEtoHs(ttOffsetTableBE.uNumOfTables);
++	for (i = 0; i < count; i++)
++	{
++		int entryOffset = offset + sizeof(TT_OFFSET_TABLE) + i * sizeof(TT_TABLE_DIRECTORY);
++		safe_read(ctx, file, entryOffset, (char *)&tblDirBE, sizeof(TT_TABLE_DIRECTORY));
++		if (!BEtoHl(tblDirBE.uTag) || BEtoHl(tblDirBE.uTag) == TTAG_name)
++			break;
++	}
++	if (count == i || !BEtoHl(tblDirBE.uTag))
++		fz_throw(ctx, FZ_ERROR_GENERIC, "fonterror : nameless font");
++	tblOffset = BEtoHl(tblDirBE.uOffset);
++
++	// read the 'name' table for record count and offsets
++	safe_read(ctx, file, tblOffset, (char *)&ttNTHeaderBE, sizeof(TT_NAME_TABLE_HEADER));
++	offset = tblOffset + sizeof(TT_NAME_TABLE_HEADER);
++	tblOffset += BEtoHs(ttNTHeaderBE.uStorageOffset);
++
++	// read through the strings for PostScript name and font family
++	count = BEtoHs(ttNTHeaderBE.uNRCount);
++	for (i = 0; i < count; i++)
++	{
++		short langId, nameId;
++		BOOL isCJKName;
++
++		safe_read(ctx, file, offset + i * sizeof(TT_NAME_RECORD), (char *)&ttRecordBE, sizeof(TT_NAME_RECORD));
++
++		langId = BEtoHs(ttRecordBE.uLanguageID);
++		nameId = BEtoHs(ttRecordBE.uNameID);
++		isCJKName = TT_NAME_ID_FONT_FAMILY == nameId && LANG_CHINESE == PRIMARYLANGID(langId);
++
++		// ignore non-English strings (except for Chinese font names)
++		if (langId && langId != TT_MS_LANGID_ENGLISH_UNITED_STATES && !isCJKName)
++			continue;
++		// ignore names other than font (sub)family and PostScript name
++		fz_try(ctx)
++		{
++			if (isCJKName)
++				read_ttf_string(ctx, file, tblOffset, &ttRecordBE, szCJKName, sizeof(szCJKName));
++			else if (TT_NAME_ID_FONT_FAMILY == nameId)
++				read_ttf_string(ctx, file, tblOffset, &ttRecordBE, szTTName, sizeof(szTTName));
++			else if (TT_NAME_ID_FONT_SUBFAMILY == nameId)
++				read_ttf_string(ctx, file, tblOffset, &ttRecordBE, szStyle, sizeof(szStyle));
++			else if (TT_NAME_ID_PS_NAME == nameId)
++				read_ttf_string(ctx, file, tblOffset, &ttRecordBE, szPSName, sizeof(szPSName));
++		}
++		fz_catch(ctx)
++		{
++			fz_warn(ctx, "ignoring face name decoding fonterror");
++		}
++	}
++
++	// try to prevent non-Arial fonts from accidentally substituting Arial
++	if (!strcmp(szPSName, "ArialMT"))
++	{
++		// cf. https://code.google.com/p/sumatrapdf/issues/detail?id=2471
++		if (strcmp(szTTName, "Arial") != 0)
++			szPSName[0] = '\0';
++		// TODO: is there a better way to distinguish Arial Caps from Arial proper?
++		// cf. http://code.google.com/p/sumatrapdf/issues/detail?id=1290
++		else if (strstr(path, "caps") || strstr(path, "Caps"))
++			fz_throw(ctx, FZ_ERROR_GENERIC, "ignore %s, as it can't be distinguished from Arial,Regular", path);
++	}
++
++	if (szPSName[0])
++		append_mapping(ctx, &fontlistMS, szPSName, path, index);
++	if (szTTName[0])
++	{
++		// derive a PostScript-like name and add it, if it's different from the font's
++		// included PostScript name; cf. http://code.google.com/p/sumatrapdf/issues/detail?id=376
++		makeFakePSName(szTTName, szStyle);
++		// compare the two names before adding this one
++		if (lookup_compare(szTTName, szPSName))
++			append_mapping(ctx, &fontlistMS, szTTName, path, index);
++	}
++	if (szCJKName[0])
++	{
++		makeFakePSName(szCJKName, szStyle);
++		if (lookup_compare(szCJKName, szPSName) && lookup_compare(szCJKName, szTTName))
++			append_mapping(ctx, &fontlistMS, szCJKName, path, index);
++	}
++}
++
++static void
++parseTTFs(fz_context *ctx, const char *path)
++{
++	fz_stream *file = fz_open_file(ctx, path);
++	/* "fonterror : %s not found", path */
++	fz_try(ctx)
++	{
++		parseTTF(ctx, file, 0, 0, path);
++	}
++	fz_always(ctx)
++	{
++		fz_drop_stream(ctx,file);
++	}
++	fz_catch(ctx)
++	{
++		fz_rethrow(ctx);
++	}
++}
++
++static void
++parseTTCs(fz_context *ctx, const char *path)
++{
++	FONT_COLLECTION fontcollectionBE;
++	ULONG i, numFonts, *offsettableBE = NULL;
++
++	fz_stream *file = fz_open_file(ctx, path);
++	/* "fonterror : %s not found", path */
++
++	fz_var(offsettableBE);
++
++	fz_try(ctx)
++	{
++		safe_read(ctx, file, 0, (char *)&fontcollectionBE, sizeof(FONT_COLLECTION));
++		if (BEtoHl(fontcollectionBE.Tag) != TTAG_ttcf)
++			fz_throw(ctx, FZ_ERROR_GENERIC, "fonterror : wrong format %x", (unsigned int)BEtoHl(fontcollectionBE.Tag));
++		if (BEtoHl(fontcollectionBE.Version) != TTC_VERSION1 &&
++			BEtoHl(fontcollectionBE.Version) != TTC_VERSION2)
++		{
++			fz_throw(ctx, FZ_ERROR_GENERIC, "fonterror : invalid version %x", (unsigned int)BEtoHl(fontcollectionBE.Version));
++		}
++
++		numFonts = BEtoHl(fontcollectionBE.NumFonts);
++		offsettableBE = fz_malloc_array(ctx, numFonts, sizeof(ULONG));
++
++		safe_read(ctx, file, sizeof(FONT_COLLECTION), (char *)offsettableBE, numFonts * sizeof(ULONG));
++		for (i = 0; i < numFonts; i++)
++			parseTTF(ctx, file, BEtoHl(offsettableBE[i]), i, path);
++	}
++	fz_always(ctx)
++	{
++		fz_free(ctx, offsettableBE);
++		fz_drop_stream(ctx,file);
++	}
++	fz_catch(ctx)
++	{
++		fz_rethrow(ctx);
++	}
++}
++
++static void
++extend_system_font_list(fz_context *ctx, const WCHAR *path)
++{
++	WCHAR szPath[MAX_PATH], *lpFileName;
++	WIN32_FIND_DATA FileData;
++	HANDLE hList;
++
++	GetFullPathName(path, nelem(szPath), szPath, &lpFileName);
++
++	hList = FindFirstFile(szPath, &FileData);
++	if (hList == INVALID_HANDLE_VALUE)
++	{
++		// Don't complain about missing directories
++		if (GetLastError() == ERROR_FILE_NOT_FOUND)
++			return;
++		fz_throw(ctx, FZ_ERROR_GENERIC, "extend_system_font_list: unknown error %d", (int)GetLastError());
++	}
++	do
++	{
++		if (!(FileData.dwFileAttributes & FILE_ATTRIBUTE_DIRECTORY))
++		{
++			char szPathUtf8[MAX_PATH], *fileExt;
++			int res;
++			lstrcpyn(lpFileName, FileData.cFileName, szPath + MAX_PATH - lpFileName);
++			res = WideCharToMultiByte(CP_UTF8, 0, szPath, -1, szPathUtf8, sizeof(szPathUtf8), NULL, NULL);
++			if (!res)
++			{
++				fz_warn(ctx, "WideCharToMultiByte failed for %S", szPath);
++				continue;
++			}
++			fileExt = szPathUtf8 + strlen(szPathUtf8) - 4;
++			fz_try(ctx)
++			{
++				if (!_stricmp(fileExt, ".ttc"))
++					parseTTCs(ctx, szPathUtf8);
++				else if (!_stricmp(fileExt, ".ttf") || !_stricmp(fileExt, ".otf"))
++					parseTTFs(ctx, szPathUtf8);
++			}
++			fz_catch(ctx)
++			{
++				// ignore errors occurring while parsing a given font file
++			}
++		}
++	} while (FindNextFile(hList, &FileData));
++	FindClose(hList);
++}
++
++static void
++destroy_system_font_list(void)
++{
++	free(fontlistMS.fontmap);
++	memset(&fontlistMS, 0, sizeof(fontlistMS));
++}
++
++static void
++create_system_font_list(fz_context *ctx)
++{
++	WCHAR szFontDir[MAX_PATH];
++	UINT cch;
++
++	cch = GetWindowsDirectory(szFontDir, nelem(szFontDir) - 12);
++	if (0 < cch && cch < nelem(szFontDir) - 12)
++	{
++        /* willus.com edit--Win XP default MSVCRT.DLL doesn't have wcscat_s */
++#ifdef _WIN64
++		wcscat_s(szFontDir, MAX_PATH, L"\\Fonts\\*.?t?");
++#else
++		wcscat(szFontDir,L"\\Fonts\\*.?t?");
++#endif
++		extend_system_font_list(ctx, szFontDir);
++	}
++
++	if (fontlistMS.len == 0)
++		fz_warn(ctx, "couldn't find any usable system fonts");
++
++#ifdef NOCJKFONT
++	{
++		// If no CJK fallback font is builtin but one has been shipped separately (in the same
++		// directory as the main executable), add it to the list of loadable system fonts
++		WCHAR szFile[MAX_PATH], *lpFileName;
++		GetModuleFileName(0, szFontDir, MAX_PATH);
++		GetFullPathName(szFontDir, MAX_PATH, szFile, &lpFileName);
++		lstrcpyn(lpFileName, L"DroidSansFallback.ttf", szFile + MAX_PATH - lpFileName);
++		extend_system_font_list(ctx, szFile);
++	}
++#endif
++
++	// sort the font list, so that it can be searched binarily
++	qsort(fontlistMS.fontmap, fontlistMS.len, sizeof(pdf_fontmapMS), _stricmp);
++
++#ifdef DEBUG
++	// allow to overwrite system fonts for debugging purposes
++	// (either pass a full path or a search pattern such as "fonts\*.ttf")
++	cch = GetEnvironmentVariable(L"MUPDF_FONTS_PATTERN", szFontDir, nelem(szFontDir));
++	if (0 < cch && cch < nelem(szFontDir))
++	{
++		int i, prev_len = fontlistMS.len;
++		extend_system_font_list(ctx, szFontDir);
++		for (i = prev_len; i < fontlistMS.len; i++)
++		{
++			pdf_fontmapMS *entry = bsearch(fontlistMS.fontmap[i].fontface, fontlistMS.fontmap, prev_len, sizeof(pdf_fontmapMS), lookup_compare);
++			if (entry)
++				*entry = fontlistMS.fontmap[i];
++		}
++		qsort(fontlistMS.fontmap, fontlistMS.len, sizeof(pdf_fontmapMS), _stricmp);
++	}
++#endif
++
++	// make sure to clean up after ourselves
++	atexit(destroy_system_font_list);
++}
++
++static fz_font *
++pdf_load_windows_font_by_name(fz_context *ctx, const char *orig_name)
++{
++	pdf_fontmapMS *found = NULL;
++	char *comma, *fontname;
++	fz_font *font;
++
++    /* WILLUS MOD--not multi-threaded for k2pdfopt */
++	/* fz_synchronize_begin(); */
++	if (fontlistMS.len == 0)
++	{
++		fz_try(ctx)
++		{
++			create_system_font_list(ctx);
++		}
++		fz_catch(ctx) { }
++	}
++    /* WILLUS MOD--not multi-threaded for k2pdfopt */
++	/* fz_synchronize_end(); */
++	if (fontlistMS.len == 0)
++		fz_throw(ctx, FZ_ERROR_GENERIC, "fonterror: couldn't find any fonts");
++
++	// work on a normalized copy of the font name
++	fontname = fz_strdup(ctx, orig_name);
++	remove_spaces(fontname);
++
++	// first, try to find the exact font name (including appended style information)
++	comma = strchr(fontname, ',');
++	if (comma)
++	{
++		*comma = '-';
++		found = pdf_find_windows_font_path(fontname);
++		*comma = ',';
++	}
++	// second, substitute the font name with a known PostScript name
++	else
++	{
++		int i;
++		for (i = 0; i < nelem(baseSubstitutes) && !found; i++)
++			if (!strcmp(fontname, baseSubstitutes[i].name))
++				found = pdf_find_windows_font_path(baseSubstitutes[i].pattern);
++	}
++	// third, search for the font name without additional style information
++	if (!found)
++		found = pdf_find_windows_font_path(fontname);
++	// fourth, try to separate style from basename for prestyled fonts (e.g. "ArialBold")
++	if (!found && !comma && (str_ends_with(fontname, "Bold") || str_ends_with(fontname, "Italic")))
++	{
++		int styleLen = str_ends_with(fontname, "Bold") ? 4 : str_ends_with(fontname, "BoldItalic") ? 10 : 6;
++		fontname = fz_resize_array(ctx, fontname, strlen(fontname) + 2, sizeof(char));
++		comma = fontname + strlen(fontname) - styleLen;
++		memmove(comma + 1, comma, styleLen + 1);
++		*comma = '-';
++		found = pdf_find_windows_font_path(fontname);
++		*comma = ',';
++		if (!found)
++			found = pdf_find_windows_font_path(fontname);
++	}
++	// fifth, try to convert the font name from the common Chinese codepage 936
++	if (!found && fontname[0] < 0)
++	{
++		WCHAR cjkNameW[MAX_FACENAME];
++		char cjkName[MAX_FACENAME];
++		if (MultiByteToWideChar(936, MB_ERR_INVALID_CHARS, fontname, -1, cjkNameW, nelem(cjkNameW)) &&
++			WideCharToMultiByte(CP_UTF8, 0, cjkNameW, -1, cjkName, nelem(cjkName), NULL, NULL))
++		{
++			comma = strchr(cjkName, ',');
++			if (comma)
++			{
++				*comma = '-';
++				found = pdf_find_windows_font_path(cjkName);
++				*comma = ',';
++			}
++			if (!found)
++				found = pdf_find_windows_font_path(cjkName);
++		}
++	}
++
++	fz_free(ctx, fontname);
++	if (!found)
++		fz_throw(ctx, FZ_ERROR_GENERIC, "couldn't find system font '%s'", orig_name);
++
++    /*
++	fz_warn(ctx, "loading non-embedded font '%s' from '%s'", orig_name, found->fontpath);
++    */
++
++	font = fz_new_font_from_file(ctx, orig_name, found->fontpath, found->index,
++		strcmp(found->fontface, "DroidSansFallback") != 0);
++    /* willus mod for MuPDF v1.10, 10-21-2016 */
++    {
++    fz_font_flags_t *flags;
++    flags=fz_font_flags(font);
++    if (flags!=NULL)
++    	flags->ft_substitute = 1;
++    }
++	return font;
++}
++
++static fz_font *
++pdf_load_windows_font(fz_context *ctx, const char *fontname, int bold, int italic, int needs_exact_metrics)
++{
++	if (needs_exact_metrics)
++	{
++		const char *clean_name;
++        /* WILLUS: Declare pdf_clean_base14_name() */
++        extern const char *pdf_clean_base14_name(const char *fontname);
++
++		/* TODO: the metrics for Times-Roman and Courier don't match
++		   those of Windows' Times New Roman and Courier New; for
++		   some reason, Poppler doesn't seem to have this problem */
++		int len;
++		if (fz_lookup_builtin_font(ctx,fontname, bold, italic, &len))
++			return NULL;
++
++		/* cf. http://code.google.com/p/sumatrapdf/issues/detail?id=2173 */
++		clean_name = pdf_clean_base14_name(fontname);
++		if (clean_name != fontname && !strncmp(clean_name, "Times-", 6))
++			return NULL;
++	}
++
++	// TODO: unset font->ft_substitute for base14/needs_exact_metrics?
++	return pdf_load_windows_font_by_name(ctx, fontname);
++}
++
++static const char *clean_font_name(const char *fontname)
++{
++	int i, k;
++	for (i = 0; i < nelem(base_font_names); i++)
++		for (k = 0; base_font_names[i][k]; k++)
++			if (!strcmp_ignore_space(base_font_names[i][k], fontname))
++				return base_font_names[i][0];
++	return fontname;
++}
++
++
++/* SumatraPDF: expose clean_font_name */
++static const char * pdf_clean_base14_name(const char *fontname)
++{
++	return clean_font_name(fontname);
++}
++
++static fz_font *
++pdf_load_windows_cjk_font(fz_context *ctx, const char *fontname, int ros, int serif)
++{
++	fz_font *font;
++
++    font=NULL; /* WILLUS: Avoid compiler warning */
++	/* try to find a matching system font before falling back to an approximate one */
++	fz_try(ctx)
++	{
++		font = pdf_load_windows_font_by_name(ctx, fontname);
++	}
++	fz_catch(ctx)
++	{
++		font = NULL;
++	}
++	if (font)
++		return font;
++
++	/* try to fall back to a reasonable system font */
++	fz_try(ctx)
++	{
++		if (serif)
++		{
++			switch (ros)
++			{
++			case FZ_ADOBE_CNS: font = pdf_load_windows_font_by_name(ctx, "MingLiU"); break;
++			case FZ_ADOBE_GB: font = pdf_load_windows_font_by_name(ctx, "SimSun"); break;
++			case FZ_ADOBE_JAPAN: font = pdf_load_windows_font_by_name(ctx, "MS-Mincho"); break;
++			case FZ_ADOBE_KOREA: font = pdf_load_windows_font_by_name(ctx, "Batang"); break;
++			default: fz_throw(ctx, FZ_ERROR_GENERIC, "invalid serif ros");
++			}
++		}
++		else
++		{
++			switch (ros)
++			{
++			case FZ_ADOBE_CNS: font = pdf_load_windows_font_by_name(ctx, "DFKaiShu-SB-Estd-BF"); break;
++			case FZ_ADOBE_GB:
++				fz_try(ctx)
++				{
++					font = pdf_load_windows_font_by_name(ctx, "KaiTi");
++				}
++				fz_catch(ctx)
++				{
++					font = pdf_load_windows_font_by_name(ctx, "KaiTi_GB2312");
++				}
++				break;
++			case FZ_ADOBE_JAPAN: font = pdf_load_windows_font_by_name(ctx, "MS-Gothic"); break;
++			case FZ_ADOBE_KOREA: font = pdf_load_windows_font_by_name(ctx, "Gulim"); break;
++			default: fz_throw(ctx, FZ_ERROR_GENERIC, "invalid sans-serif ros");
++			}
++		}
++	}
++	fz_catch(ctx)
++	{
++#ifdef NOCJKFONT
++		/* If no CJK fallback font is builtin, maybe one has been shipped separately */
++		font = pdf_load_windows_font_by_name(ctx, "DroidSansFallback");
++#else
++		fz_rethrow(ctx);
++#endif
++	}
++
++	return font;
++}
++
++#endif
++
++void pdf_install_load_system_font_funcs(fz_context *ctx)
++{
++#ifdef _WIN32
++	fz_install_load_system_font_funcs(ctx, pdf_load_windows_font, pdf_load_windows_cjk_font, NULL);
++#endif
++}
+diff --git a/source/fitz/font.c b/source/fitz/font.c
+index 733d91dae..69c46d968 100644
+--- a/source/fitz/font.c
++++ b/source/fitz/font.c
+@@ -5,8 +5,11 @@
+ #include "draw-imp.h"
+ 
+ #include <ft2build.h>
++/* willus mod -- remove hb includes */
++/*
+ #include "hb.h"
+ #include "hb-ft.h"
++*/
+ 
+ #include <assert.h>
+ 
+diff --git a/source/fitz/stext-device.c b/source/fitz/stext-device.c
+index 0ba944d44..3c05c51ac 100644
+--- a/source/fitz/stext-device.c
++++ b/source/fitz/stext-device.c
+@@ -692,6 +692,11 @@ fz_new_stext_device(fz_context *ctx, fz_stext_page *page, const fz_stext_options
+ 	dev->trm = fz_identity;
+ 	dev->lastchar = ' ';
+ 	dev->curdir = 1;
++    /* willus mod -- seems like this should be here, but not sure. */
++    if (opts)
++        dev->flags = opts->flags;
++    else
++        dev->flags = 0;
+ 
+ 	return (fz_device*)dev;
+ }
+diff --git a/source/fitz/string.c b/source/fitz/string.c
+index e70ae6e6e..b310463f4 100644
+--- a/source/fitz/string.c
++++ b/source/fitz/string.c
+@@ -448,6 +448,10 @@ fz_utflen(const char *s)
+ 
+ float fz_atof(const char *s)
+ {
++/* willus mod: atof(s), #if-#else-#endif */
++#if (!defined(__SSE__))
++    return(atof(s));
++#else
+ 	float result;
+ 
+ 	errno = 0;
+@@ -457,6 +461,7 @@ float fz_atof(const char *s)
+ 		return 1;
+ 	result = fz_clamp(result, -FLT_MAX, FLT_MAX);
+ 	return result;
++#endif
+ }
+ 
+ int fz_atoi(const char *s)
+diff --git a/source/pdf/pdf-annot.c b/source/pdf/pdf-annot.c
+index 68de8898a..5d43485bd 100644
+--- a/source/pdf/pdf-annot.c
++++ b/source/pdf/pdf-annot.c
+@@ -4,8 +4,20 @@
+ #include <string.h>
+ #include <time.h>
+ 
++/* willus mod--don't use _mkgmtime--not available in Win XP */
+ #ifdef _WIN32
+-#define timegm _mkgmtime
++static time_t timegm(struct tm *date);
++static time_t timegm(struct tm *date)
++
++    {
++    time_t t,z;
++    struct tm gmz;
++
++    z=(time_t)0;
++    gmz=(*gmtime(&z));
++    t=mktime(date)-mktime(&gmz);
++    return(t);
++    }
+ #endif
+ 
+ #define TEXT_ANNOT_SIZE (25.0f)
+diff --git a/source/pdf/pdf-link.c b/source/pdf/pdf-link.c
+index ae5beaa35..b5a52a000 100644
+--- a/source/pdf/pdf-link.c
++++ b/source/pdf/pdf-link.c
+@@ -351,6 +351,9 @@ pdf_resolve_link(fz_context *ctx, pdf_document *doc, const char *uri, float *xp,
+ 		}
+ 		return page;
+ 	}
++/* willus mod -- be quiet */
++/*
+ 	fz_warn(ctx, "unknown link uri '%s'", uri);
++*/
+ 	return -1;
+ }
+diff --git a/source/pdf/pdf-parse.c b/source/pdf/pdf-parse.c
+index 501c5626a..927ba6cd5 100644
+--- a/source/pdf/pdf-parse.c
++++ b/source/pdf/pdf-parse.c
+@@ -586,9 +586,14 @@ pdf_parse_ind_obj(fz_context *ctx, pdf_document *doc,
+ 			if (c == '\r')
+ 			{
+ 				c = fz_peek_byte(ctx, file);
++/* willus mod -- no warning */
++/*
+ 				if (c != '\n')
+ 					fz_warn(ctx, "line feed missing after stream begin marker (%d %d R)", num, gen);
+ 				else
++*/
++if (c=='\n')
++/* willus mod -- end */
+ 					fz_read_byte(ctx, file);
+ 			}
+ 			stm_ofs = fz_tell(ctx, file);
+diff --git a/source/pdf/pdf-xref.c b/source/pdf/pdf-xref.c
+index 2475b6e86..bc163563a 100644
+--- a/source/pdf/pdf-xref.c
++++ b/source/pdf/pdf-xref.c
+@@ -707,8 +707,11 @@ pdf_xref_size_from_old_trailer(fz_context *ctx, pdf_document *doc, pdf_lexbuf *b
+ 		if (!s)
+ 			fz_throw(ctx, FZ_ERROR_GENERIC, "xref subsection length missing");
+ 		len = fz_atoi(fz_strsep(&s, " "));
++/* willus mod -- no warning */
++/*
+ 		if (len < 0)
+ 			fz_throw(ctx, FZ_ERROR_GENERIC, "xref subsection length must be positive");
++*/
+ 
+ 		/* broken pdfs where the section is not on a separate line */
+ 		if (s && *s != '\0')
+@@ -1372,7 +1375,10 @@ pdf_init_document(fz_context *ctx, pdf_document *doc)
+ 	{
+ 		pdf_drop_xref_sections(ctx, doc);
+ 		fz_rethrow_if(ctx, FZ_ERROR_TRYLATER);
++/* willus mod -- be quiet */
++/*
+ 		fz_warn(ctx, "trying to repair broken xref");
++*/
+ 		repaired = 1;
+ 	}
+ 
+@@ -1496,7 +1502,10 @@ pdf_drop_document_imp(fz_context *ctx, pdf_document *doc)
+ 		/* Swallow error, but continue dropping */
+ 	}
+ 
++/* willu smod -- no pdf_drop_js */
++/*
+ 	pdf_drop_js(ctx, doc->js);
++*/
+ 
+ 	pdf_drop_xref_sections(ctx, doc);
+ 	fz_free(ctx, doc->xref_index);
+-- 
+2.22.0
+
diff --git a/pkgs/applications/misc/k2pdfopt/tesseract.patch b/pkgs/applications/misc/k2pdfopt/tesseract.patch
index b882f5b949c3..adfee9ae282f 100644
--- a/pkgs/applications/misc/k2pdfopt/tesseract.patch
+++ b/pkgs/applications/misc/k2pdfopt/tesseract.patch
@@ -1,13 +1,675 @@
+From 39aa8502eee7bb669a29d1a9b3bfe5c9595ad960 Mon Sep 17 00:00:00 2001
+From: Daniel Fullmer <danielrf12@gmail.com>
+Date: Fri, 13 Sep 2019 13:45:05 -0400
+Subject: [PATCH] Willus mod changes from k2pdfopt
+
+---
+ src/api/Makefile.am        |   1 +
+ src/api/baseapi.cpp        |  87 +++++++++++
+ src/api/baseapi.h          |   3 +
+ src/api/tesscapi.cpp       | 311 +++++++++++++++++++++++++++++++++++++
+ src/api/tesseract.h        |  29 ++++
+ src/ccmain/tessedit.cpp    |   5 +-
+ src/ccutil/ccutil.h        |   7 +
+ src/ccutil/genericvector.h |  21 ++-
+ src/ccutil/mainblk.cpp     |  17 +-
+ src/ccutil/params.cpp      |   3 +-
+ src/ccutil/serialis.cpp    |   3 +
+ src/ccutil/serialis.h      |   2 +
+ src/lstm/input.cpp         |   3 +
+ 13 files changed, 488 insertions(+), 4 deletions(-)
+ create mode 100644 src/api/tesscapi.cpp
+ create mode 100644 src/api/tesseract.h
+
 diff --git a/src/api/Makefile.am b/src/api/Makefile.am
-index d8c1e54..46ead13 100644
+index d9b76eb6..cd2dc30f 100644
 --- a/src/api/Makefile.am
 +++ b/src/api/Makefile.am
-@@ -42,7 +42,7 @@ libtesseract_api_la_CPPFLAGS = $(AM_CPPFLAGS)
- if VISIBILITY
- libtesseract_api_la_CPPFLAGS += -DTESS_EXPORTS
- endif
--libtesseract_api_la_SOURCES = baseapi.cpp capi.cpp renderer.cpp pdfrenderer.cpp
-+libtesseract_api_la_SOURCES = baseapi.cpp capi.cpp renderer.cpp pdfrenderer.cpp tesscapi.cpp
+@@ -39,6 +39,7 @@ libtesseract_api_la_SOURCES += lstmboxrenderer.cpp
+ libtesseract_api_la_SOURCES += pdfrenderer.cpp
+ libtesseract_api_la_SOURCES += wordstrboxrenderer.cpp
+ libtesseract_api_la_SOURCES += renderer.cpp
++libtesseract_api_la_SOURCES += tesscapi.cpp
  
  lib_LTLIBRARIES += libtesseract.la
- libtesseract_la_LDFLAGS = 
+ libtesseract_la_LDFLAGS = $(LEPTONICA_LIBS) $(OPENCL_LDFLAGS) $(libarchive_LIBS)
+diff --git a/src/api/baseapi.cpp b/src/api/baseapi.cpp
+index 9245d07c..ea964ee6 100644
+--- a/src/api/baseapi.cpp
++++ b/src/api/baseapi.cpp
+@@ -215,6 +215,14 @@ TessBaseAPI::TessBaseAPI()
+   // Use the current locale if building debug code.
+   std::locale::global(std::locale(""));
+ #endif
++  const char *locale;
++  locale = std::setlocale(LC_ALL, nullptr);
++/* willus mod Remove assertions--taken care of in tesscapi.cpp */
++//  ASSERT_HOST(!strcmp(locale, "C"));
++  locale = std::setlocale(LC_CTYPE, nullptr);
++//  ASSERT_HOST(!strcmp(locale, "C"));
++  locale = std::setlocale(LC_NUMERIC, nullptr);
++//  ASSERT_HOST(!strcmp(locale, "C"));
+ }
+ 
+ TessBaseAPI::~TessBaseAPI() {
+@@ -1333,6 +1341,85 @@ static void AddBoxToTSV(const PageIterator* it, PageIteratorLevel level,
+   text->add_str_int("\t", bottom - top);
+ }
+ 
++/* willus mod */
++int TessBaseAPI::GetOCRWords(int **x00,int **y00,int **x11,int **y11,int **ybaseline0,
++                             char **utf8words)
++
++    {
++    int iword,nwords,totlen,it8;
++    int *x0,*y0,*x1,*y1,*ybaseline;
++    char *tutf8;
++
++    ResultIterator *res_it = GetIterator();
++    /* Count words */
++    iword=0;
++    totlen=0;
++    while (!res_it->Empty(RIL_BLOCK))
++        {
++        if (res_it->Empty(RIL_WORD))
++            {
++            res_it->Next(RIL_WORD);
++            continue;
++            }
++        iword++;
++        STRING textstr=std::unique_ptr<const char[]>(res_it->GetUTF8Text(RIL_WORD)).get();
++        totlen+=strlen(textstr.string())+1;
++        res_it->Next(RIL_WORD);
++        }
++    nwords=iword;
++/*
++printf("\nnwords=%d, totlen=%d\n",nwords,totlen);
++*/
++    x0=(*x00)=(int *)malloc(sizeof(int)*5*nwords);
++    y0=(*y00)=&x0[nwords];
++    x1=(*x11)=&y0[nwords];
++    y1=(*y11)=&x1[nwords];
++    ybaseline=(*ybaseline0)=&y1[nwords];
++    tutf8=(*utf8words)=(char *)malloc(totlen);
++    iword=0;
++    it8=0;
++    res_it->Begin();
++    while (!res_it->Empty(RIL_BLOCK))
++        {
++        if (res_it->Empty(RIL_WORD))
++            {
++            res_it->Next(RIL_WORD);
++            continue;
++            }
++        STRING textstr=std::unique_ptr<const char[]>(res_it->GetUTF8Text(RIL_WORD)).get();
++        strcpy(&tutf8[it8],textstr.string());
++        it8 += strlen(&tutf8[it8])+1;
++        /*
++        STRING textstr("");
++        textstr += std::unique_ptr<const char[]>(res_it->GetUTF8Text(RIL_WORD)).get();
++        */
++/*
++printf("Word %d: '%s'\n",iword,textstr.string());
++*/
++        int left, top, right, bottom;
++        int u1,v1,u2,v2;
++        res_it->BoundingBox(RIL_WORD, &left, &top, &right, &bottom);
++        res_it->Baseline(RIL_WORD, &u1, &v1, &u2, &v2);
++        x0[iword]=left;
++        x1[iword]=right;
++        y0[iword]=top;
++        y1[iword]=bottom;
++        ybaseline[iword]=(v1+v2)/2;
++        iword++;
++/*
++printf("BB: (%d,%d)-(%d,%d)  BL: (%d,%d)-(%d,%d)\n",left,bottom,right,top,x1,y1,x2,y2);
++*/
++        res_it->Next(RIL_WORD);
++        }
++/*
++printf("iword=%d\n",iword);
++*/
++    return(iword);
++    }
++
++/* willus mod */
++int GetOCRWords(int **x0,int **y0,int **x1,int **y1,int **ybaseline,char **utf8words);
++
+ /**
+  * Make a TSV-formatted string from the internal data structures.
+  * page_number is 0-based but will appear in the output as 1-based.
+diff --git a/src/api/baseapi.h b/src/api/baseapi.h
+index 3724dd92..23be5920 100644
+--- a/src/api/baseapi.h
++++ b/src/api/baseapi.h
+@@ -575,6 +575,9 @@ class TESS_API TessBaseAPI {
+    */
+   char* GetHOCRText(ETEXT_DESC* monitor, int page_number);
+ 
++/* willus mod */
++int GetOCRWords(int **x0,int **y0,int **x1,int **y1,int **ybaseline,char **utf8words);
++
+   /**
+    * Make a HTML-formatted string with hOCR markup from the internal
+    * data structures.
+diff --git a/src/api/tesscapi.cpp b/src/api/tesscapi.cpp
+new file mode 100644
+index 00000000..1752fafe
+--- /dev/null
++++ b/src/api/tesscapi.cpp
+@@ -0,0 +1,311 @@
++/*
++** tesscapi.cpp    willus.com attempt at C wrapper for tesseract.
++**                 (Butchered from tesseractmain.cpp)
++**                 Last udpated 9-1-12
++**
++** Copyright (C) 2012  http://willus.com
++**
++** This program is free software: you can redistribute it and/or modify
++** it under the terms of the GNU Affero General Public License as
++** published by the Free Software Foundation, either version 3 of the
++** License, or (at your option) any later version.
++**
++** This program is distributed in the hope that it will be useful,
++** but WITHOUT ANY WARRANTY; without even the implied warranty of
++** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
++** GNU Affero General Public License for more details.
++**
++** You should have received a copy of the GNU Affero General Public License
++** along with this program.  If not, see <http://www.gnu.org/licenses/>.
++**
++*/
++
++/*
++#include "mfcpch.h"
++*/
++// #define USE_VLD //Uncomment for Visual Leak Detector.
++#if (defined _MSC_VER && defined USE_VLD)
++#include <vld.h>
++#endif
++
++// Include automatically generated configuration file if running autoconf
++#ifdef HAVE_CONFIG_H
++#include "config_auto.h"
++#endif
++#include <locale.h>
++#ifdef USING_GETTEXT
++#include <libintl.h>
++#define _(x) gettext(x)
++#else
++#define _(x) (x)
++#endif
++
++#include "allheaders.h"
++#include "baseapi.h"
++#include "strngs.h"
++#include "params.h"
++#include "blobs.h"
++#include "simddetect.h"
++#include "tesseractclass.h"
++/*
++#include "notdll.h"
++*/
++
++/* C Wrappers */
++#include "tesseract.h"
++
++// static tesseract::TessBaseAPI api[4];
++
++/*
++** ocr_type=0:  OEM_DEFAULT
++** ocr_type=1:  OEM_TESSERACT_ONLY
++** ocr_type=2:  OEM_LSTM_ONLY
++** ocr_type=3:  OEM_TESSERACT_LSTM_COMBINED
++*/
++void *tess_capi_init(char *datapath,char *language,int ocr_type,FILE *out,
++                     char *initstr,int maxlen,int *status)
++
++    {
++    char original_locale[256];
++    tesseract::TessBaseAPI *api = new tesseract::TessBaseAPI;
++/*
++printf("@tess_capi_init\n");
++printf("    datapath='%s'\n",datapath);
++printf("    language='%s'\n",language);
++printf("    ocr_type=%d\n",ocr_type);
++*/
++#ifdef USE_NLS
++    setlocale (LC_ALL, "");
++    bindtextdomain (PACKAGE, LOCALEDIR);
++    textdomain (PACKAGE);
++#endif
++    /* willus mod, 11-24-16 */
++    /* Tesseract needs "C" locale to correctly parse all data .traineddata files. */
++/*
++printf("locale='%s'\n",setlocale(LC_ALL,NULL));
++printf("ctype='%s'\n",setlocale(LC_CTYPE,NULL));
++printf("numeric='%s'\n",setlocale(LC_NUMERIC,NULL));
++*/
++    strncpy(original_locale,setlocale(LC_ALL,NULL),255);
++    original_locale[255]='\0';
++/*
++printf("original_locale='%s'\n",original_locale);
++*/
++    setlocale(LC_ALL,"C");
++/*
++printf("new locale='%s'\n",setlocale(LC_ALL,NULL));
++printf("new ctype='%s'\n",setlocale(LC_CTYPE,NULL));
++printf("new numeric='%s'\n",setlocale(LC_NUMERIC,NULL));
++*/
++    // fprintf(stderr, "tesseract %s\n", tesseract::TessBaseAPI::Version());
++    // Make the order of args a bit more forgiving than it used to be.
++    const char* lang = "eng";
++    tesseract::PageSegMode pagesegmode = tesseract::PSM_SINGLE_BLOCK;
++    if (language!=NULL && language[0]!='\0')
++        lang = language;
++    /*
++    if (output == NULL)
++        {
++        fprintf(stderr, _("Usage:%s imagename outputbase [-l lang] "
++                      "[-psm pagesegmode] [configfile...]\n"), argv[0]);
++        fprintf(stderr,
++            _("pagesegmode values are:\n"
++              "0 = Orientation and script detection (OSD) only.\n"
++              "1 = Automatic page segmentation with OSD.\n"
++              "2 = Automatic page segmentation, but no OSD, or OCR\n"
++              "3 = Fully automatic page segmentation, but no OSD. (Default)\n"
++              "4 = Assume a single column of text of variable sizes.\n"
++              "5 = Assume a single uniform block of vertically aligned text.\n"
++              "6 = Assume a single uniform block of text.\n"
++              "7 = Treat the image as a single text line.\n"
++              "8 = Treat the image as a single word.\n"
++              "9 = Treat the image as a single word in a circle.\n"
++              "10 = Treat the image as a single character.\n"));
++        fprintf(stderr, _("-l lang and/or -psm pagesegmode must occur before any"
++                      "configfile.\n"));
++        exit(1);
++        }
++    */
++/*
++printf("SSE = %s\n",SIMDDetect::IsSSEAvailable() ? "AVAILABLE" : "NOT AVAILABLE");
++printf("AVX = %s\n",SIMDDetect::IsAVXAvailable() ? "AVAILABLE" : "NOT AVAILABLE");
++*/
++/*
++v4.00 loads either TESSERACT enginer, LSTM engine, or both.  No CUBE.
++*/
++    ocr_type=0; /* Ignore specified and use default */
++    api->SetOutputName(NULL);
++    (*status)=api->Init(datapath,lang,
++              ocr_type==0 ? tesseract::OEM_DEFAULT :
++                (ocr_type==1 ? tesseract::OEM_TESSERACT_ONLY :
++                   (ocr_type==2 ? tesseract::OEM_LSTM_ONLY :
++                                  (tesseract::OEM_TESSERACT_LSTM_COMBINED))));
++    if ((*status)!=0)
++        {
++        /* willus mod, 11-24-16 */
++        setlocale(LC_ALL,original_locale);
++        api->End();
++        delete api;
++        return(NULL);
++        }
++    /*
++    api.Init("tesscapi",lang,tesseract::OEM_DEFAULT,
++           &(argv[arg]), argc - arg, NULL, NULL, false);
++    */
++    // We have 2 possible sources of pagesegmode: a config file and
++    // the command line. For backwards compatability reasons, the
++    // default in tesseract is tesseract::PSM_SINGLE_BLOCK, but the
++    // default for this program is tesseract::PSM_AUTO. We will let
++    // the config file take priority, so the command-line default
++    // can take priority over the tesseract default, so we use the
++    // value from the command line only if the retrieved mode
++    // is still tesseract::PSM_SINGLE_BLOCK, indicating no change
++    // in any config file. Therefore the only way to force
++    // tesseract::PSM_SINGLE_BLOCK is from the command line.
++    // It would be simpler if we could set the value before Init,
++    // but that doesn't work.
++    if (api->GetPageSegMode() == tesseract::PSM_SINGLE_BLOCK)
++        api->SetPageSegMode(pagesegmode);
++
++    /*
++    ** Initialization message
++    */
++    {
++    char istr[1024];
++    int sse,avx;
++
++// printf("tessedit_ocr_engine_mode = %d\n",tessedit_ocr_engine_mode);
++    sprintf(istr,"%s",api->Version());
++    sse=tesseract::SIMDDetect::IsSSEAvailable();
++    avx=tesseract::SIMDDetect::IsAVXAvailable();
++    if (sse || avx)
++        sprintf(&istr[strlen(istr)]," [%s]",sse&&avx?"SSE+AVX":(sse?"SSE":"AVX"));
++    sprintf(&istr[strlen(istr)],"\n    Tesseract data folder = '%s'",datapath==NULL?getenv("TESSDATA_PREFIX"):datapath);
++    strcat(istr,"\n    Tesseract languages: ");
++    GenericVector<STRING> languages;
++    api->GetLoadedLanguagesAsVector(&languages);
++/*
++printf("OEM=%d\n",api->oem());
++printf("Langs='%s'\n",api->GetInitLanguagesAsString());
++printf("AnyTessLang()=%d\n",(int)api->tesseract()->AnyTessLang());
++printf("AnyLSTMLang()=%d\n",(int)api->tesseract()->AnyLSTMLang());
++printf("num_sub_langs()=%d\n",api->tesseract()->num_sub_langs());
++printf("languages.size()=%d\n",(int)languages.size());
++*/
++
++    for (int i=0;i<=api->tesseract()->num_sub_langs();i++)
++        {
++        tesseract::Tesseract *lang1;
++        int eng;
++        lang1 = i==0 ? api->tesseract() : api->tesseract()->get_sub_lang(i-1);
++        eng=(int)lang1->tessedit_ocr_engine_mode;
++        sprintf(&istr[strlen(istr)],"%s%s [%s]",i==0?"":", ",lang1->lang.string(),
++                 eng==2?"LSTM+Tess":(eng==1?"LSTM":"Tess"));
++        }
++/*
++printf("%d. '%s'\n",i+1,languages[i].string());
++printf("    sublang[%d].oem_engine = %d\n",i+1,(int)api->tesseract()->get_sub_lang(i)->tessedit_ocr_engine_mode);
++*/
++
++    /*
++    if (ocr_type==0 || ocr_type==3)
++        sprintf(&istr[strlen(istr)],"[LSTM+] (lang=");
++    else if (ocr_type==2)
++        sprintf(&istr[strlen(istr)],"[LSTM] (lang=");
++    strncpy(&istr[strlen(istr)],language,253-strlen(istr));
++    istr[253]='\0';
++    strcat(istr,")");
++    */
++    if (out!=NULL)
++        fprintf(out,"%s\n",istr);
++    if (initstr!=NULL)
++        {
++        strncpy(initstr,istr,maxlen-1);
++        initstr[maxlen-1]='\0';
++        }
++    }
++
++
++    /* Turn off LSTM debugging output */
++    api->SetVariable("lstm_debug_level","0");
++#if (WILLUSDEBUG & 1)
++    api->SetVariable("lstm_debug_level","9");
++    api->SetVariable("paragraph_debug_level","9");
++    api->SetVariable("tessdata_manager_debug_level","9");
++    api->SetVariable("tosp_debug_level","9");
++    api->SetVariable("wordrec_debug_level","9");
++    api->SetVariable("segsearch_debug_level","9");
++#endif
++    /* willus mod, 11-24-16 */
++    setlocale(LC_ALL,original_locale);
++    return((void *)api);
++    }
++
++
++int tess_capi_get_ocr(void *vapi,PIX *pix,char *outstr,int maxlen,int segmode,FILE *out)
++
++    {
++    tesseract::TessBaseAPI *api;
++    static int old_segmode=-1;
++
++    api=(tesseract::TessBaseAPI *)vapi;
++    if (old_segmode != segmode)
++        {
++        old_segmode=segmode;
++        api->SetPageSegMode((tesseract::PageSegMode)segmode);
++        }
++    if (!api->ProcessPage(pix,0,NULL,NULL,0,NULL))
++        {
++        /* pixDestroy(&pix); */
++        if (out!=NULL)
++            fprintf(out,"tesscapi:  Error during bitmap processing.\n");
++        api->Clear();
++        return(-1);
++        }
++    strncpy(outstr,api->GetUTF8Text(),maxlen-1);
++    outstr[maxlen-1]='\0';
++    api->Clear();
++    return(0);
++    }
++
++
++int tess_capi_get_ocr_multiword(void *vapi,PIX *pix,int segmode,
++                                int **left,int **top,int **right,int **bottom,
++                                int **ybase,char **text,int *nw,
++                                FILE *out)
++
++    {
++    tesseract::TessBaseAPI *api;
++    static int old_segmode=-1;
++
++    api=(tesseract::TessBaseAPI *)vapi;
++    if (old_segmode != segmode)
++        {
++        old_segmode=segmode;
++        api->SetPageSegMode((tesseract::PageSegMode)segmode);
++        }
++    if (!api->ProcessPage(pix,0,NULL,NULL,0,NULL))
++        {
++        if (out!=NULL)
++            fprintf(out,"tesscapi:  Error during bitmap processing.\n");
++        api->Clear();
++        (*nw)=0;
++        return(-1);
++        }
++    (*nw)=api->GetOCRWords(left,top,right,bottom,ybase,text);
++    api->Clear();
++    return(0);
++    }
++
++
++void tess_capi_end(void *vapi)
++
++    {
++    tesseract::TessBaseAPI *api;
++
++    if (vapi==NULL)
++        return;
++    api=(tesseract::TessBaseAPI *)vapi;
++    api->End();
++    delete api;
++    }
+diff --git a/src/api/tesseract.h b/src/api/tesseract.h
+new file mode 100644
+index 00000000..575948cc
+--- /dev/null
++++ b/src/api/tesseract.h
+@@ -0,0 +1,29 @@
++/*
++** Willus.com's Tesseract C Wrappers
++**
++** 6-8-12
++**
++*/
++
++#ifndef           _TESSERACT_H_
++#define           _TESSERACT_H_
++
++//#include <leptonica.h>
++#ifdef __cplusplus
++extern "C" {
++#endif
++
++void *tess_capi_init(char *datapath,char *language,int ocr_type,FILE *out,
++                    char *initstr,int maxlen,int *status);
++int tess_capi_get_ocr(void *api,PIX *pix,char *outstr,int maxlen,int segmode,FILE *out);
++int tess_capi_get_ocr_multiword(void *vapi,PIX *pix,int segmode,
++                                int **left,int **top,int **right,int **bottom,
++                                int **ybase,char **text,int *nw,
++                                FILE *out);
++void tess_capi_end(void *api);
++
++#ifdef __cplusplus
++}
++#endif
++
++#endif
+diff --git a/src/ccmain/tessedit.cpp b/src/ccmain/tessedit.cpp
+index 17f0951b..7af94ee2 100644
+--- a/src/ccmain/tessedit.cpp
++++ b/src/ccmain/tessedit.cpp
+@@ -101,6 +101,10 @@ bool Tesseract::init_tesseract_lang_data(
+         " to your \"tessdata\" directory.\n");
+     return false;
+   }
++  /* willus mod */
++  TFile fp;
++  strncpy(fp.tfile_filename,tessdata_path.string(),511);
++  fp.tfile_filename[511]='\0';
+ #ifndef DISABLED_LEGACY_ENGINE
+   if (oem == OEM_DEFAULT) {
+     // Set the engine mode from availability, which can then be overridden by
+@@ -116,7 +120,6 @@ bool Tesseract::init_tesseract_lang_data(
+ #endif  // ndef DISABLED_LEGACY_ENGINE
+ 
+   // If a language specific config file (lang.config) exists, load it in.
+-  TFile fp;
+   if (mgr->GetComponent(TESSDATA_LANG_CONFIG, &fp)) {
+     ParamUtils::ReadParamsFromFp(SET_PARAM_CONSTRAINT_NONE, &fp,
+                                  this->params());
+diff --git a/src/ccutil/ccutil.h b/src/ccutil/ccutil.h
+index 71e89c60..bdeccc14 100644
+--- a/src/ccutil/ccutil.h
++++ b/src/ccutil/ccutil.h
+@@ -80,6 +80,13 @@ class CCUtil {
+   // Member parameters.
+   // These have to be declared and initialized after params_ member, since
+   // params_ should be initialized before parameters are added to it.
++/* willus mod */
++/*
++  #ifdef _WIN32
++  STRING_VAR_H(tessedit_module_name, WINDLLNAME,
++               "Module colocated with tessdata dir");
++  #endif
++*/
+   INT_VAR_H(ambigs_debug_level, 0, "Debug level for unichar ambiguities");
+   BOOL_VAR_H(use_definite_ambigs_for_classifier, false,
+              "Use definite ambiguities when running character classifier");
+diff --git a/src/ccutil/genericvector.h b/src/ccutil/genericvector.h
+index 3556d153..3a5e8662 100644
+--- a/src/ccutil/genericvector.h
++++ b/src/ccutil/genericvector.h
+@@ -382,7 +382,26 @@ inline bool LoadDataFromFile(const char* filename, GenericVector<char>* data) {
+       // reserve an extra byte in case caller wants to append a '\0' character
+       data->reserve(size + 1);
+       data->resize_no_init(size);
+-      result = static_cast<long>(fread(&(*data)[0], 1, size, fp)) == size;
++    /* willus mod Dec 2018--weird issue with Win XP and MinGW gcc 7.3.0 */
++    /* Can't read entire file at once -- need to break up into smaller blocksize reads */
++    {
++    int frs,n;
++    int blocksize;
++    blocksize=1024*1024;
++    for (n=0;1;)
++        {
++        int bs;
++        bs= size-n > blocksize ? blocksize : size-n;
++        frs=(int)fread(&(*data)[n],1,bs,fp);
++        n+=frs;
++        if (frs<bs || bs<blocksize || n>=size)
++            break;
++        }
++    result = static_cast<long>((long)n==size);
++    }
++    /*
++    result = static_cast<long>(fread(&(*data)[0], 1, size, fp)) == size;
++    */
+     }
+     fclose(fp);
+   }
+diff --git a/src/ccutil/mainblk.cpp b/src/ccutil/mainblk.cpp
+index 52b04b04..80b26044 100644
+--- a/src/ccutil/mainblk.cpp
++++ b/src/ccutil/mainblk.cpp
+@@ -55,8 +55,22 @@ void CCUtil::main_setup(const char *argv0, const char *basename) {
+ #if defined(_WIN32)
+   } else if (datadir == nullptr || _access(datadir.string(), 0) != 0) {
+     /* Look for tessdata in directory of executable. */
++    /*
++    char drive[_MAX_DRIVE];
++    char dir[_MAX_DIR];
++    */
+     char path[_MAX_PATH];
+-    DWORD length = GetModuleFileName(nullptr, path, sizeof(path));
++    int i;
++    /* DWORD length = */ GetModuleFileName(nullptr, path, sizeof(path));
++    /* willus mod--avoid _splitpath_s -- not in XP */
++    for (i=strlen(path)-1;i>=0 && path[i]!='/' && path[i]!='\\';i--);
++    if (i>=0)
++        {
++        path[i]='\0';
++        datadir=path;
++        datadir += "/tessdata";
++        }
++    /*
+     if (length > 0 && length < sizeof(path)) {
+       char* separator = std::strrchr(path, '\\');
+       if (separator != nullptr) {
+@@ -65,6 +79,7 @@ void CCUtil::main_setup(const char *argv0, const char *basename) {
+         datadir += "/tessdata";
+       }
+     }
++    */
+ #endif /* _WIN32 */
+ #if defined(TESSDATA_PREFIX)
+   } else {
+diff --git a/src/ccutil/params.cpp b/src/ccutil/params.cpp
+index 00bf2563..486c5ce0 100644
+--- a/src/ccutil/params.cpp
++++ b/src/ccutil/params.cpp
+@@ -82,7 +82,8 @@ bool ParamUtils::ReadParamsFromFp(SetParamConstraint constraint, TFile *fp,
+ 
+       if (!foundit) {
+         anyerr = true;         // had an error
+-        tprintf("Warning: Parameter not found: %s\n", line);
++        /* willus mod */
++        tprintf("Tesseract warning: Parameter %s not found in file %s.\n",line,fp->tfile_filename);
+       }
+     }
+   }
+diff --git a/src/ccutil/serialis.cpp b/src/ccutil/serialis.cpp
+index 7def011f..6107a494 100644
+--- a/src/ccutil/serialis.cpp
++++ b/src/ccutil/serialis.cpp
+@@ -201,6 +201,9 @@ bool TFile::Open(const STRING& filename, FileReader reader) {
+   offset_ = 0;
+   is_writing_ = false;
+   swap_ = false;
++  /* willus mod */
++  strncpy(tfile_filename,filename.string(),511);
++  tfile_filename[511]='\0';
+   if (reader == nullptr)
+     return LoadDataFromFile(filename, data_);
+   else
+diff --git a/src/ccutil/serialis.h b/src/ccutil/serialis.h
+index 095b9227..4cc8251e 100644
+--- a/src/ccutil/serialis.h
++++ b/src/ccutil/serialis.h
+@@ -77,6 +77,8 @@ class TFile {
+  public:
+   TFile();
+   ~TFile();
++  /* willus mod */
++  char tfile_filename[512];
+ 
+   // All the Open methods load the whole file into memory for reading.
+   // Opens a file with a supplied reader, or nullptr to use the default.
+diff --git a/src/lstm/input.cpp b/src/lstm/input.cpp
+index 73b584b3..0b0b54c3 100644
+--- a/src/lstm/input.cpp
++++ b/src/lstm/input.cpp
+@@ -93,8 +93,11 @@ Pix* Input::PrepareLSTMInputs(const ImageData& image_data,
+     return nullptr;
+   }
+   if (width < min_width || height < min_width) {
++    /* willus mod -- no warning */
++    /*
+     tprintf("Image too small to scale!! (%dx%d vs min width of %d)\n", width,
+             height, min_width);
++    */
+     pixDestroy(&pix);
+     return nullptr;
+   }
+-- 
+2.22.0
+

From 0d5806fefd312d904c9f8b49c728a3072678a87e Mon Sep 17 00:00:00 2001
From: Maximilian Bosch <maximilian@mbosch.me>
Date: Sat, 14 Sep 2019 14:59:00 +0200
Subject: [PATCH 137/152] paperless: fix cors header

`django-cors-headers` 3.x (which is used in nixpkgs) requires a scheme
for allowed hosts. Upstream uses 2.4, however we create the python env
with Nix, so the source needs to be patched accordingly.
---
 pkgs/applications/office/paperless/default.nix | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/pkgs/applications/office/paperless/default.nix b/pkgs/applications/office/paperless/default.nix
index af2fd82ddb03..97088f360417 100644
--- a/pkgs/applications/office/paperless/default.nix
+++ b/pkgs/applications/office/paperless/default.nix
@@ -57,6 +57,12 @@ let
       cp -r --no-preserve=mode $src/src/* $src/LICENSE $srcDir
     '';
 
+    postPatch = ''
+      # django-cors-headers 3.x requires a scheme for allowed hosts
+      substituteInPlace $out/share/paperless/paperless/settings.py \
+        --replace "localhost:8080" "http://localhost:8080"
+    '';
+
     buildPhase = let
       # Paperless has explicit runtime checks that expect these binaries to be in PATH
       extraBin = lib.makeBinPath [ imagemagick7 ghostscript optipng tesseract unpaper ];

From e416a394644fe17244958ed9f7f5507a1e642b50 Mon Sep 17 00:00:00 2001
From: Daniel Schaefer <git@danielschaefer.me>
Date: Sat, 14 Sep 2019 15:04:02 +0200
Subject: [PATCH 138/152] bareos: Mark as broken

Doesn't have a maintainer.
Doesn't work with our new glusterfs version.
bareos18 has changed from autotools to cmake so the derivation has to be
completely rewritten.
---
 pkgs/tools/backup/bareos/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/tools/backup/bareos/default.nix b/pkgs/tools/backup/bareos/default.nix
index ce77ebe8c1ae..79ae1e50ca2b 100644
--- a/pkgs/tools/backup/bareos/default.nix
+++ b/pkgs/tools/backup/bareos/default.nix
@@ -77,5 +77,6 @@ stdenv.mkDerivation rec {
     description = "A fork of the bacula project";
     license = licenses.agpl3;
     platforms = platforms.unix;
+    broken = true;
   };
 }

From 6a0c11b93118702cee109b2c5704bbba00a734ec Mon Sep 17 00:00:00 2001
From: Pierre Bourdon <delroth@gmail.com>
Date: Sat, 14 Sep 2019 15:23:26 +0200
Subject: [PATCH 139/152] home-assistant: add missing setuptools dependency

Fixes currently broken nixos hass test: https://hydra.nixos.org/build/100923199
---
 pkgs/servers/home-assistant/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/servers/home-assistant/default.nix b/pkgs/servers/home-assistant/default.nix
index 43633b07818f..5f7ef11246ed 100644
--- a/pkgs/servers/home-assistant/default.nix
+++ b/pkgs/servers/home-assistant/default.nix
@@ -124,7 +124,7 @@ in with py.pkgs; buildPythonApplication rec {
     # From setup.py
     aiohttp astral async-timeout attrs bcrypt certifi importlib-metadata jinja2
     pyjwt cryptography pip python-slugify pytz pyyaml requests ruamel_yaml
-    voluptuous voluptuous-serialize
+    setuptools voluptuous voluptuous-serialize
     # From http, frontend and recorder components and auth.mfa_modules.totp
     sqlalchemy aiohttp-cors hass-frontend pyotp pyqrcode
   ] ++ componentBuildInputs ++ extraBuildInputs;

From 77eef5529f0fc0b1711eb10ea2ec20084a1cb3f6 Mon Sep 17 00:00:00 2001
From: Robert Helgesson <robert@rycee.net>
Date: Sat, 14 Sep 2019 16:47:09 +0200
Subject: [PATCH 140/152] svtplay-dl: 2.2 -> 2.4

---
 pkgs/tools/misc/svtplay-dl/default.nix | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/pkgs/tools/misc/svtplay-dl/default.nix b/pkgs/tools/misc/svtplay-dl/default.nix
index 12ba89304c0e..b530193258c9 100644
--- a/pkgs/tools/misc/svtplay-dl/default.nix
+++ b/pkgs/tools/misc/svtplay-dl/default.nix
@@ -2,20 +2,23 @@
 , gitMinimal }:
 
 let
-  inherit (python3Packages) python nose pycrypto pyyaml requests mock;
+
+  inherit (python3Packages)
+    python nose pycrypto pyyaml requests mock python-dateutil setuptools;
+
 in stdenv.mkDerivation rec {
   pname = "svtplay-dl";
-  version = "2.2";
+  version = "2.4";
 
   src = fetchFromGitHub {
     owner = "spaam";
     repo = "svtplay-dl";
     rev = version;
-    sha256 = "02yjz17x8dl5spn7mcbj1ji7vsyx0qwwa60zqyrdxpr03g1rnhdz";
+    sha256 = "146ss7pzh61yw84crk6hzfxkfdnf6bq07m11b6lgsw4hsn71g59w";
   };
 
   pythonPaths = [ pycrypto pyyaml requests ];
-  buildInputs = [ python perl nose mock makeWrapper ] ++ pythonPaths;
+  buildInputs = [ python perl nose mock makeWrapper python-dateutil setuptools ] ++ pythonPaths;
   nativeBuildInputs = [ gitMinimal zip ];
 
   postPatch = ''
@@ -32,9 +35,6 @@ in stdenv.mkDerivation rec {
 
   doCheck = true;
   checkPhase = ''
-    sed -i "/def test_parse_m3u8/i\\
-        @unittest.skip('requires internet')" lib/svtplay_dl/tests/hls.py
-
     sh scripts/run-tests.sh -2
   '';
 

From 260761649bd857ea73eeb6cd21c7e6c9830d7215 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Vladim=C3=ADr=20=C4=8Cun=C3=A1t?= <v@cunat.cz>
Date: Sat, 14 Sep 2019 20:12:49 +0200
Subject: [PATCH 141/152] ffmpeg_4, ffmpeg_full: 4.2 -> 4.2.1

Fixes #68561 CVE-2019-15942.
---
 pkgs/development/libraries/ffmpeg-full/default.nix | 4 ++--
 pkgs/development/libraries/ffmpeg/4.nix            | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/development/libraries/ffmpeg-full/default.nix b/pkgs/development/libraries/ffmpeg-full/default.nix
index 45a4f48fd337..78d291e86fac 100644
--- a/pkgs/development/libraries/ffmpeg-full/default.nix
+++ b/pkgs/development/libraries/ffmpeg-full/default.nix
@@ -238,11 +238,11 @@ assert opensslExtlib -> gnutls == null && openssl != null && nonfreeLicensing;
 
 stdenv.mkDerivation rec {
   pname = "ffmpeg-full";
-  version = "4.2";
+  version = "4.2.1";
 
   src = fetchurl {
     url = "https://www.ffmpeg.org/releases/ffmpeg-${version}.tar.xz";
-    sha256 = "1mgcxm7sqkajx35px05szsmn9mawwm03cfpmk3br7bcp3a1i0gq2";
+    sha256 = "1m5nkc61ihgcf0b2wabm0zyqa8sj3c0w8fi6kr879lb0kdzciiyf";
   };
 
   patches = [ ./prefer-libdav1d-over-libaom.patch ];
diff --git a/pkgs/development/libraries/ffmpeg/4.nix b/pkgs/development/libraries/ffmpeg/4.nix
index 670f51000a6b..a0b95cecaaba 100644
--- a/pkgs/development/libraries/ffmpeg/4.nix
+++ b/pkgs/development/libraries/ffmpeg/4.nix
@@ -5,8 +5,8 @@
 }@args:
 
 callPackage ./generic.nix (args // rec {
-  version = branch;
+  version = "4.2.1";
   branch = "4.2";
-  sha256 = "1f3glany3p2j832a9wia5vj8ds9xpm0xxlyia91y17hy85gxwsrh";
+  sha256 = "090naa6rj46pzkgh03bf51hbqdz356qqckr2pw6pykc6ysiryak8";
   darwinFrameworks = [ Cocoa CoreMedia VideoToolbox ];
 })

From a715aa7073c683cb791763b88f7e9af43a276963 Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@protonmail.ch>
Date: Mon, 9 Sep 2019 16:43:26 -0400
Subject: [PATCH 142/152] kexectools: fix build on i686

https://hydra.nixos.org/build/99957229
See: https://src.fedoraproject.org/rpms/kexec-tools/c/cb1e5463b5298b064e9b6c86ad6fe3505fec9298

Forward-cherry picked from commit dc051dfdef1e, but only conditionally
for i686 to rebuild only where necessary.  Discussion: PR #68380.
---
 pkgs/os-specific/linux/kexectools/default.nix | 12 +++++++++++-
 1 file changed, 11 insertions(+), 1 deletion(-)

diff --git a/pkgs/os-specific/linux/kexectools/default.nix b/pkgs/os-specific/linux/kexectools/default.nix
index 3d3215e6b4bf..d6fd7346f4f5 100644
--- a/pkgs/os-specific/linux/kexectools/default.nix
+++ b/pkgs/os-specific/linux/kexectools/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, buildPackages, fetchurl, zlib }:
+{ stdenv, buildPackages, fetchurl, zlib, fetchpatch }:
 
 stdenv.mkDerivation rec {
   pname = "kexec-tools";
@@ -18,6 +18,16 @@ stdenv.mkDerivation rec {
   depsBuildBuild = [ buildPackages.stdenv.cc ];
   buildInputs = [ zlib ];
 
+  patches = stdenv.lib.optionals stdenv.hostPlatform.isi686 [
+    # fix build on i686
+    # See: https://src.fedoraproject.org/rpms/kexec-tools/c/cb1e5463b5298b064e9b6c86ad6fe3505fec9298
+    (fetchpatch {
+      name = "kexec-tools-2.0.20-fix-broken-multiboot2-buliding-for-i386.patch";
+      url = "https://src.fedoraproject.org/rpms/kexec-tools/raw/cb1e5463b5298b064e9b6c86ad6fe3505fec9298/f/kexec-tools-2.0.20-fix-broken-multiboot2-buliding-for-i386.patch";
+      sha256 = "1kzmcsbhwfdgxlc5s88ir0n494phww1j16yk0z42x09qlkxxkg0l";
+    })
+  ];
+
   meta = with stdenv.lib; {
     homepage = http://horms.net/projects/kexec/kexec-tools;
     description = "Tools related to the kexec Linux feature";

From 1ba3d1a591a20d8f504b4eb74dc170fddc3b2bc4 Mon Sep 17 00:00:00 2001
From: Matthieu Coudron <mattator@gmail.com>
Date: Thu, 12 Sep 2019 00:34:10 +0900
Subject: [PATCH 143/152] mupdf: 1.14.0 -> 1.16.1

---
 pkgs/applications/misc/mupdf/default.nix | 13 +++----------
 1 file changed, 3 insertions(+), 10 deletions(-)

diff --git a/pkgs/applications/misc/mupdf/default.nix b/pkgs/applications/misc/mupdf/default.nix
index 9219c4e2e423..ddd325214b2f 100644
--- a/pkgs/applications/misc/mupdf/default.nix
+++ b/pkgs/applications/misc/mupdf/default.nix
@@ -14,24 +14,17 @@ let
 
 
 in stdenv.mkDerivation rec {
-  version = "1.14.0";
+  version = "1.16.1";
   pname = "mupdf";
 
   src = fetchurl {
     url = "https://mupdf.com/downloads/archive/${pname}-${version}-source.tar.gz";
-    sha256 = "093p7lv6pgyymagn28n58fs0np928r0i5p2az9cc4gwccwx4hhy4";
+    sha256 = "0iz4ickj52fxjp8crg573kjrl4viq279g589isdpgpckslysf7g7";
   };
 
   patches =
     # Use shared libraries to decrease size
-    [( fetchpatch
-      {
-          name = "CVE-2018-18662";
-          url = "http://git.ghostscript.com/?p=mupdf.git;a=patch;h=164ddc22ee0d5b63a81d5148f44c37dd132a9356";
-          sha256 = "1jkzh20n3b854871h86cy5y7fvy0d5wyqy51b3fg6gj3a0jqpzzd";
-      }
-    )]
-    ++ stdenv.lib.optional (!stdenv.isDarwin) ./mupdf-1.14-shared_libs.patch
+    stdenv.lib.optional (!stdenv.isDarwin) ./mupdf-1.14-shared_libs.patch
     ++ stdenv.lib.optional stdenv.isDarwin ./darwin.patch
   ;
 

From 8c5898347d233e624ec5cfe5a80f6d3c50021c67 Mon Sep 17 00:00:00 2001
From: Matthieu Coudron <mattator@gmail.com>
Date: Thu, 12 Sep 2019 17:01:11 +0900
Subject: [PATCH 144/152] zathura: 0.3.4 -> 0.3.5

to fix issues with the new mupdf
---
 pkgs/applications/misc/zathura/pdf-mupdf/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/zathura/pdf-mupdf/default.nix b/pkgs/applications/misc/zathura/pdf-mupdf/default.nix
index 2ebc640d683d..d8c1364d3957 100644
--- a/pkgs/applications/misc/zathura/pdf-mupdf/default.nix
+++ b/pkgs/applications/misc/zathura/pdf-mupdf/default.nix
@@ -2,7 +2,7 @@
 , pkgconfig, zathura_core, cairo , gtk-mac-integration, girara, mupdf }:
 
 stdenv.mkDerivation rec {
-  version = "0.3.4";
+  version = "0.3.5";
   pname = "zathura-pdf-mupdf";
 
   # pwmt.org server was down at the time of last update
@@ -14,7 +14,7 @@ stdenv.mkDerivation rec {
     owner = "pwmt";
     repo = "zathura-pdf-mupdf";
     rev = version;
-    sha256 = "1m4w4jrybpjmx6pi33a5saxzmfd8rrym2k13jpd1fv543s17d9dy";
+    sha256 = "0wb46hllykbi30ir69s8s23mihivqn13mgfdzawbsn2a21p8y4zl";
   };
 
   nativeBuildInputs = [ meson ninja pkgconfig ];

From 8a4029fa8bfc7383a1467779d75ffdd4acbfab36 Mon Sep 17 00:00:00 2001
From: Matthieu Coudron <mattator@gmail.com>
Date: Thu, 12 Sep 2019 17:13:36 +0900
Subject: [PATCH 145/152] llpp: 30 -> 31

---
 pkgs/applications/misc/llpp/default.nix       |  4 +--
 .../misc/llpp/fix-build-bash.patch            | 34 +++++++------------
 2 files changed, 14 insertions(+), 24 deletions(-)

diff --git a/pkgs/applications/misc/llpp/default.nix b/pkgs/applications/misc/llpp/default.nix
index c66ef21416be..2c2acb6a7434 100644
--- a/pkgs/applications/misc/llpp/default.nix
+++ b/pkgs/applications/misc/llpp/default.nix
@@ -5,12 +5,12 @@ assert lib.versionAtLeast (lib.getVersion ocaml) "4.07";
 
 stdenv.mkDerivation rec {
   pname = "llpp";
-  version = "30";
+  version = "31";
 
   src = fetchgit {
     url = "git://repo.or.cz/llpp.git";
     rev = "v${version}";
-    sha256 = "0iilpzf12hs0zky58j55l4y5dvzv7fc53nsrg324n9vka92mppvd";
+    sha256 = "14ibsm1zzxfidjajcj30b5m9in10q3817izahsjvkmryrvvn6qsg";
     fetchSubmodules = false;
   };
 
diff --git a/pkgs/applications/misc/llpp/fix-build-bash.patch b/pkgs/applications/misc/llpp/fix-build-bash.patch
index 25d503290ce8..13dbdb926c8f 100644
--- a/pkgs/applications/misc/llpp/fix-build-bash.patch
+++ b/pkgs/applications/misc/llpp/fix-build-bash.patch
@@ -1,14 +1,5 @@
-From cccadedfbcb6764a38382154838113a6b2fd4dee Mon Sep 17 00:00:00 2001
-From: Michael Hoang <enzime@users.noreply.github.com>
-Date: Mon, 10 Dec 2018 15:08:01 +1100
-Subject: [PATCH] Patch build.bash for nixpkgs
-
----
- build.bash | 37 ++-----------------------------------
- 1 file changed, 2 insertions(+), 35 deletions(-)
-
 diff --git a/build.bash b/build.bash
-index 1588011..72117d9 100755
+index 7c278b6..41494c5 100755
 --- a/build.bash
 +++ b/build.bash
 @@ -29,7 +29,6 @@ srcd="$(dirname $0)"
@@ -20,10 +11,10 @@ index 1588011..72117d9 100755
  mkdir -p $outd/{$wsid,lablGL}
  :>$outd/ordered
 @@ -39,12 +38,6 @@ isfresh() { test -r "$1.past" && . "$1.past" && test "$k" = "$2"; }
- mbt=native
+ mbt=${mbt:-native}
  mulibs="$mudir/build/$mbt/libmupdf.a" # $mudir/build/$mbt/libmupdf-third.a
  
--keycmd="(cd $mudir && git describe --tags --dirty); digest $mulibs"
+-keycmd="(cd $mudir && make -q build=$mbt libs && echo); digest $mulibs"
 -isfresh "$mulibs" "$(eval $keycmd)" || (
 -    make -C "$mudir" build=$mbt -j $mjobs libs
 -    echo "k='$(eval $keycmd)'" >$mudir/build/$mbt/libmupdf.a.past
@@ -32,12 +23,12 @@ index 1588011..72117d9 100755
  oincs() {
      local i=
      local incs1=
-@@ -90,32 +83,6 @@ mflags() {
+@@ -90,34 +83,6 @@ mflags() {
  }
  
  overs="$(ocamlc -vnum 2>/dev/null)" || overs=""
--test "$overs" = "4.07.0" || {
--    url=https://caml.inria.fr/pub/distrib/ocaml-4.07/ocaml-4.07.0.tar.xz
+-test "$overs" = "4.08" || {
+-    url=https://caml.inria.fr/pub/distrib/ocaml-4.08/ocaml-4.08.0.tar.xz
 -    txz=$outd/$(basename $url)
 -    isfresh $txz $url || {
 -        executable_p() { command -v "$1" >/dev/null 2>&1; }
@@ -54,8 +45,10 @@ index 1588011..72117d9 100755
 -        tar xf $txz -C $outd
 -        bn=$(basename $url)
 -        cd $outd/${bn%.tar.xz}
--        ./configure -prefix $absprefix                                      \
--                    -no-graph -no-debugger -no-ocamldoc -no-native-compiler
+-        ./configure --disable-vmthreads --disable-graph-lib \
+-                    --disable-ocamldoc --enable-debugger=no \
+-                    --disable-flat-float-array              \
+-                    --prefix=$absprefix
 -        make -j $mjobs world
 -        make install
 -        echo "k='$url'" >$absprefix/bin/ocamlc.past
@@ -65,7 +58,7 @@ index 1588011..72117d9 100755
  
  bocaml1() {
      grep -q "$3" $outd/ordered || {
-@@ -224,7 +191,7 @@ bobjc() {
+@@ -227,7 +192,7 @@ bobjc() {
      } && vecho "fresh $o"
  }
  
@@ -74,7 +67,7 @@ index 1588011..72117d9 100755
  
  cmd="(. $srcd/genconfstr.sh >$outd/confstruct.ml)"
  keycmd="digest $srcd/genconfstr.sh $outd/confstruct.ml"
-@@ -278,7 +245,7 @@ for m in ml_gl ml_glarray ml_raw; do
+@@ -281,7 +246,7 @@ for m in ml_gl ml_glarray ml_raw; do
  done
  
  libs="str.cma unix.cma"
@@ -83,6 +76,3 @@ index 1588011..72117d9 100755
  if $darwin; then
      mcomp=$(ocamlc -config | grep bytecomp_c_co | { read _ c; echo $c; })
      clibs="$clibs -framework Cocoa -framework OpenGL"
--- 
-2.19.2
-

From 1fff932e7f9c9fbca12392122a10ef1d03e14450 Mon Sep 17 00:00:00 2001
From: Daniel Fullmer <danielrf12@gmail.com>
Date: Fri, 13 Sep 2019 16:23:47 -0400
Subject: [PATCH 146/152] k2pdfopt: Fix patch for mupdf 1.16.1

---
 pkgs/applications/misc/k2pdfopt/default.nix   |   4 +-
 .../misc/k2pdfopt/k2pdfopt-mupdf-1.16.1.patch | 151 ++++++++++++++++++
 pkgs/applications/misc/k2pdfopt/mupdf.patch   |  46 +++---
 3 files changed, 176 insertions(+), 25 deletions(-)
 create mode 100644 pkgs/applications/misc/k2pdfopt/k2pdfopt-mupdf-1.16.1.patch

diff --git a/pkgs/applications/misc/k2pdfopt/default.nix b/pkgs/applications/misc/k2pdfopt/default.nix
index 58bd200e713c..a2eba8e08c27 100644
--- a/pkgs/applications/misc/k2pdfopt/default.nix
+++ b/pkgs/applications/misc/k2pdfopt/default.nix
@@ -30,7 +30,7 @@ stdenv.mkDerivation rec {
     cp -r ${v251a_src}/* $sourceRoot
   '';
 
-  patches = [ ./k2pdfopt.patch ];
+  patches = [ ./k2pdfopt.patch ./k2pdfopt-mupdf-1.16.1.patch ];
 
   nativeBuildInputs = [ cmake pkgconfig ];
 
@@ -41,7 +41,7 @@ stdenv.mkDerivation rec {
     #  corresponding files in the respective source trees, resolving any errors
     #  with more recent versions of these depencencies, and running diff.
     mupdf_modded = mupdf.overrideAttrs (attrs: {
-      patches = attrs.patches ++ [ ./mupdf.patch ]; # Last verified with mupdf 1.14.0
+      patches = attrs.patches ++ [ ./mupdf.patch ]; # Last verified with mupdf 1.16.1
     });
     leptonica_modded = leptonica.overrideAttrs (attrs: {
       patches = [ ./leptonica.patch ]; # Last verified with leptonica 1.78.0
diff --git a/pkgs/applications/misc/k2pdfopt/k2pdfopt-mupdf-1.16.1.patch b/pkgs/applications/misc/k2pdfopt/k2pdfopt-mupdf-1.16.1.patch
new file mode 100644
index 000000000000..3a9eca30e751
--- /dev/null
+++ b/pkgs/applications/misc/k2pdfopt/k2pdfopt-mupdf-1.16.1.patch
@@ -0,0 +1,151 @@
+diff --git a/willuslib/wmupdf.c b/willuslib/wmupdf.c
+index 81627ef..f14a96c 100644
+--- a/willuslib/wmupdf.c
++++ b/willuslib/wmupdf.c
+@@ -189,8 +189,6 @@ int wmupdf_remake_pdf(char *infile,char *outfile,WPDFPAGEINFO *pageinfo,int use_
+     pdf_write_opts.do_compress=1;
+     pdf_write_opts.do_linear=0;
+     pdf_write_opts.do_garbage=1; /* 2 and 3 don't work for this. */
+-    pdf_write_opts.continue_on_error=0;
+-    pdf_write_opts.errors=NULL;
+     write_failed=0;
+     wpdfpageinfo_sort(pageinfo);
+     xref=NULL;
+@@ -1687,8 +1685,8 @@ WPDFOUTLINE *wpdfoutline_read_from_pdf_file(char *filename)
+         /* Sumatra version of MuPDF v1.4 -- use locally installed fonts */
+         pdf_install_load_system_font_funcs(ctx);
+         fz_try(ctx) { doc=fz_open_document(ctx,filename); }
+-        fz_catch(ctx) 
+-            { 
++        fz_catch(ctx)
++            {
+             fz_drop_context(ctx);
+             return(NULL);
+             }
+@@ -1890,5 +1888,5 @@ static pdf_obj *pdf_new_string_utf8(fz_context *ctx,char *string)
+     willus_mem_free((double **)&utfbuf,funcname);
+     return(pdfobj);
+     }
+-    
++
+ #endif /* HAVE_MUPDF_LIB */
+diff --git a/willuslib/wmupdfinfo.c b/willuslib/wmupdfinfo.c
+index 5c7f38c..9b9e6fd 100644
+--- a/willuslib/wmupdfinfo.c
++++ b/willuslib/wmupdfinfo.c
+@@ -237,23 +237,22 @@ static void showglobalinfo(fz_context *ctx, globals *glo,char *filename)
+         pdf_obj *robj;
+ 
+         robj=pdf_resolve_indirect(ctx,obj);
+-        n=pdf_sprint_obj(ctx,NULL,0,robj,1);
+-        buf=malloc(n+2);
++        buf=pdf_sprint_obj(ctx,NULL,0,&n,robj,1,0);
+         if (buf==NULL)
+             {
+             fz_write_printf(ctx,out,"Info object (%d %d R):\n",pdf_to_num(ctx,obj),pdf_to_gen(ctx,obj));
+-		    pdf_print_obj(ctx,out,robj,1);
++		    pdf_print_obj(ctx,out,robj,1,0);
+             }
+         else
+             {
+-            pdf_sprint_obj(ctx,buf,n+2,robj,1);
++            pdf_sprint_obj(ctx,buf,n+2,&n,robj,1,0);
+             display_pdf_field(ctx,out,buf,"Title","TITLE");
+             display_pdf_field(ctx,out,buf,"CreationDate","CREATED");
+             display_pdf_field(ctx,out,buf,"ModDate","LAST MODIFIED");
+             display_pdf_field(ctx,out,buf,"Producer","PDF PRODUCER");
+             display_pdf_field(ctx,out,buf,"Creator","CREATOR");
+             display_file_size(ctx,out,filename);
+-            free(buf);
++            fz_free(ctx,buf);
+             }
+ 	    }
+     if (glo->dims==1)
+@@ -275,7 +274,7 @@ static void showglobalinfo(fz_context *ctx, globals *glo,char *filename)
+ 	if (obj)
+         {
+ 		fz_write_printf(ctx,out, "\nEncryption object (%d %d R):\n", pdf_to_num(ctx,obj), pdf_to_gen(ctx,obj));
+-		pdf_print_obj(ctx,out, pdf_resolve_indirect(ctx,obj), 1);
++		pdf_print_obj(ctx,out, pdf_resolve_indirect(ctx,obj), 1, 0);
+         }
+     }
+ 
+@@ -396,7 +395,7 @@ gatherdimensions(fz_context *ctx, globals *glo, int page, pdf_obj *pageref, pdf_
+ 	if (j < glo->dims)
+ 		return;
+ 
+-	glo->dim = fz_resize_array(ctx, glo->dim, glo->dims+1, sizeof(struct info));
++	glo->dim = fz_realloc_array(ctx, glo->dim, glo->dims+1, struct info);
+ 	glo->dims++;
+ 
+ 	glo->dim[glo->dims - 1].page = page;
+@@ -441,7 +440,7 @@ gatherfonts(fz_context *ctx, globals *glo, int page, pdf_obj *pageref, pdf_obj *
+ 		if (k < glo->fonts)
+ 			continue;
+ 
+-		glo->font = fz_resize_array(ctx, glo->font, glo->fonts+1, sizeof(struct info));
++		glo->font = fz_realloc_array(ctx, glo->font, glo->fonts+1, struct info);
+ 		glo->fonts++;
+ 
+ 		glo->font[glo->fonts - 1].page = page;
+@@ -510,7 +509,7 @@ gatherimages(fz_context *ctx, globals *glo, int page, pdf_obj *pageref, pdf_obj
+ 		if (k < glo->images)
+ 			continue;
+ 
+-		glo->image = fz_resize_array(ctx, glo->image, glo->images+1, sizeof(struct info));
++		glo->image = fz_realloc_array(ctx, glo->image, glo->images+1, struct info);
+ 		glo->images++;
+ 
+ 		glo->image[glo->images - 1].page = page;
+@@ -568,7 +567,7 @@ gatherforms(fz_context *ctx, globals *glo, int page, pdf_obj *pageref, pdf_obj *
+ 		if (k < glo->forms)
+ 			continue;
+ 
+-		glo->form = fz_resize_array(ctx, glo->form, glo->forms+1, sizeof(struct info));
++		glo->form = fz_realloc_array(ctx, glo->form, glo->forms+1, struct info);
+ 		glo->forms++;
+ 
+ 		glo->form[glo->forms - 1].page = page;
+@@ -613,7 +612,7 @@ gatherpsobjs(fz_context *ctx, globals *glo, int page, pdf_obj *pageref, pdf_obj
+ 		if (k < glo->psobjs)
+ 			continue;
+ 
+-		glo->psobj = fz_resize_array(ctx, glo->psobj, glo->psobjs+1, sizeof(struct info));
++		glo->psobj = fz_realloc_array(ctx, glo->psobj, glo->psobjs+1, struct info);
+ 		glo->psobjs++;
+ 
+ 		glo->psobj[glo->psobjs - 1].page = page;
+@@ -656,7 +655,7 @@ gathershadings(fz_context *ctx, globals *glo, int page, pdf_obj *pageref, pdf_ob
+ 		if (k < glo->shadings)
+ 			continue;
+ 
+-		glo->shading = fz_resize_array(ctx, glo->shading, glo->shadings+1, sizeof(struct info));
++		glo->shading = fz_realloc_array(ctx, glo->shading, glo->shadings+1, struct info);
+ 		glo->shadings++;
+ 
+ 		glo->shading[glo->shadings - 1].page = page;
+@@ -724,7 +723,7 @@ gatherpatterns(fz_context *ctx, globals *glo, int page, pdf_obj *pageref, pdf_ob
+ 		if (k < glo->patterns)
+ 			continue;
+ 
+-		glo->pattern = fz_resize_array(ctx, glo->pattern, glo->patterns+1, sizeof(struct info));
++		glo->pattern = fz_realloc_array(ctx, glo->pattern, glo->patterns+1, struct info);
+ 		glo->patterns++;
+ 
+ 		glo->pattern[glo->patterns - 1].page = page;
+@@ -1216,7 +1215,7 @@ void wmupdfinfo_get(char *filename,int *pagelist,char **buf)
+     if (fout==NULL)
+         return;
+     */
+-    
++
+     ctx = fz_new_context(NULL, NULL, FZ_STORE_UNLIMITED);
+     if (!ctx)
+         {
+@@ -1307,5 +1306,5 @@ static void date_convert(char *dst,char *src)
+     else if (src[i]!='\0')
+         sprintf(&dst[strlen(dst)]," %s",&src[i]);
+     }
+-    
++
+ #endif /* HAVE_MUPDF_LIB */
diff --git a/pkgs/applications/misc/k2pdfopt/mupdf.patch b/pkgs/applications/misc/k2pdfopt/mupdf.patch
index f7c04d42a71d..0c59a1d20163 100644
--- a/pkgs/applications/misc/k2pdfopt/mupdf.patch
+++ b/pkgs/applications/misc/k2pdfopt/mupdf.patch
@@ -1,4 +1,4 @@
-From 3d763f84872351c250ffea26150e73b02b8f4c6f Mon Sep 17 00:00:00 2001
+From d8927c969e3387ca2669a616c0ba53bce918a031 Mon Sep 17 00:00:00 2001
 From: Daniel Fullmer <danielrf12@gmail.com>
 Date: Fri, 13 Sep 2019 15:11:45 -0400
 Subject: [PATCH] Willus mod for k2pdfopt
@@ -904,10 +904,10 @@ index 000000000..45de8cfd3
 +#endif
 +}
 diff --git a/source/fitz/font.c b/source/fitz/font.c
-index 733d91dae..69c46d968 100644
+index 00c6e8f99..1448b4a56 100644
 --- a/source/fitz/font.c
 +++ b/source/fitz/font.c
-@@ -5,8 +5,11 @@
+@@ -4,8 +4,11 @@
  #include "draw-imp.h"
  
  #include <ft2build.h>
@@ -920,13 +920,13 @@ index 733d91dae..69c46d968 100644
  #include <assert.h>
  
 diff --git a/source/fitz/stext-device.c b/source/fitz/stext-device.c
-index 0ba944d44..3c05c51ac 100644
+index 2df90305e..b1f99e056 100644
 --- a/source/fitz/stext-device.c
 +++ b/source/fitz/stext-device.c
-@@ -692,6 +692,11 @@ fz_new_stext_device(fz_context *ctx, fz_stext_page *page, const fz_stext_options
- 	dev->trm = fz_identity;
+@@ -825,6 +825,11 @@ fz_new_stext_device(fz_context *ctx, fz_stext_page *page, const fz_stext_options
  	dev->lastchar = ' ';
  	dev->curdir = 1;
+ 	dev->lasttext = NULL;
 +    /* willus mod -- seems like this should be here, but not sure. */
 +    if (opts)
 +        dev->flags = opts->flags;
@@ -936,11 +936,11 @@ index 0ba944d44..3c05c51ac 100644
  	return (fz_device*)dev;
  }
 diff --git a/source/fitz/string.c b/source/fitz/string.c
-index e70ae6e6e..b310463f4 100644
+index f8eedb682..7a767983d 100644
 --- a/source/fitz/string.c
 +++ b/source/fitz/string.c
-@@ -448,6 +448,10 @@ fz_utflen(const char *s)
- 
+@@ -560,6 +560,10 @@ fz_utflen(const char *s)
+ */
  float fz_atof(const char *s)
  {
 +/* willus mod: atof(s), #if-#else-#endif */
@@ -949,20 +949,20 @@ index e70ae6e6e..b310463f4 100644
 +#else
  	float result;
  
- 	errno = 0;
-@@ -457,6 +461,7 @@ float fz_atof(const char *s)
+ 	if (s == NULL)
+@@ -572,6 +576,7 @@ float fz_atof(const char *s)
  		return 1;
  	result = fz_clamp(result, -FLT_MAX, FLT_MAX);
  	return result;
 +#endif
  }
  
- int fz_atoi(const char *s)
+ /*
 diff --git a/source/pdf/pdf-annot.c b/source/pdf/pdf-annot.c
-index 68de8898a..5d43485bd 100644
+index 4dfdf36fe..acff7d12a 100644
 --- a/source/pdf/pdf-annot.c
 +++ b/source/pdf/pdf-annot.c
-@@ -4,8 +4,20 @@
+@@ -5,8 +5,20 @@
  #include <string.h>
  #include <time.h>
  
@@ -983,12 +983,12 @@ index 68de8898a..5d43485bd 100644
 +    }
  #endif
  
- #define TEXT_ANNOT_SIZE (25.0f)
+ #define isdigit(c) (c >= '0' && c <= '9')
 diff --git a/source/pdf/pdf-link.c b/source/pdf/pdf-link.c
-index ae5beaa35..b5a52a000 100644
+index 37444b471..613cc05b9 100644
 --- a/source/pdf/pdf-link.c
 +++ b/source/pdf/pdf-link.c
-@@ -351,6 +351,9 @@ pdf_resolve_link(fz_context *ctx, pdf_document *doc, const char *uri, float *xp,
+@@ -345,6 +345,9 @@ pdf_resolve_link(fz_context *ctx, pdf_document *doc, const char *uri, float *xp,
  		}
  		return page;
  	}
@@ -999,10 +999,10 @@ index ae5beaa35..b5a52a000 100644
  	return -1;
  }
 diff --git a/source/pdf/pdf-parse.c b/source/pdf/pdf-parse.c
-index 501c5626a..927ba6cd5 100644
+index 04a772204..9dd0cd898 100644
 --- a/source/pdf/pdf-parse.c
 +++ b/source/pdf/pdf-parse.c
-@@ -586,9 +586,14 @@ pdf_parse_ind_obj(fz_context *ctx, pdf_document *doc,
+@@ -663,9 +663,14 @@ pdf_parse_ind_obj(fz_context *ctx, pdf_document *doc,
  			if (c == '\r')
  			{
  				c = fz_peek_byte(ctx, file);
@@ -1018,10 +1018,10 @@ index 501c5626a..927ba6cd5 100644
  			}
  			stm_ofs = fz_tell(ctx, file);
 diff --git a/source/pdf/pdf-xref.c b/source/pdf/pdf-xref.c
-index 2475b6e86..bc163563a 100644
+index 8f888059b..08de7bfba 100644
 --- a/source/pdf/pdf-xref.c
 +++ b/source/pdf/pdf-xref.c
-@@ -707,8 +707,11 @@ pdf_xref_size_from_old_trailer(fz_context *ctx, pdf_document *doc, pdf_lexbuf *b
+@@ -710,8 +710,11 @@ pdf_xref_size_from_old_trailer(fz_context *ctx, pdf_document *doc, pdf_lexbuf *b
  		if (!s)
  			fz_throw(ctx, FZ_ERROR_GENERIC, "xref subsection length missing");
  		len = fz_atoi(fz_strsep(&s, " "));
@@ -1033,7 +1033,7 @@ index 2475b6e86..bc163563a 100644
  
  		/* broken pdfs where the section is not on a separate line */
  		if (s && *s != '\0')
-@@ -1372,7 +1375,10 @@ pdf_init_document(fz_context *ctx, pdf_document *doc)
+@@ -1378,7 +1381,10 @@ pdf_init_document(fz_context *ctx, pdf_document *doc)
  	{
  		pdf_drop_xref_sections(ctx, doc);
  		fz_rethrow_if(ctx, FZ_ERROR_TRYLATER);
@@ -1044,7 +1044,7 @@ index 2475b6e86..bc163563a 100644
  		repaired = 1;
  	}
  
-@@ -1496,7 +1502,10 @@ pdf_drop_document_imp(fz_context *ctx, pdf_document *doc)
+@@ -1506,7 +1512,10 @@ pdf_drop_document_imp(fz_context *ctx, pdf_document *doc)
  		/* Swallow error, but continue dropping */
  	}
  

From f76c818bb0c917a2651aacd7a31ecfa96beabf5a Mon Sep 17 00:00:00 2001
From: "Evan.Stoll" <evan.stoll@rjginc.com>
Date: Sat, 14 Sep 2019 18:16:45 -0400
Subject: [PATCH 147/152] vimPlugins: Update

---
 pkgs/misc/vim-plugins/generated.nix | 24 ++++++++++++------------
 1 file changed, 12 insertions(+), 12 deletions(-)

diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix
index 812fbfab98d7..9e505558d5ee 100644
--- a/pkgs/misc/vim-plugins/generated.nix
+++ b/pkgs/misc/vim-plugins/generated.nix
@@ -923,12 +923,12 @@ let
 
   deoplete-nvim = buildVimPluginFrom2Nix {
     pname = "deoplete-nvim";
-    version = "2019-09-09";
+    version = "2019-09-14";
     src = fetchFromGitHub {
       owner = "Shougo";
       repo = "deoplete.nvim";
-      rev = "48b1643509e4ef3a4af6cf57df35e6c6ac1275ce";
-      sha256 = "192lph0kbs4mmbsz1jsjmrmy3an53bkd4lzyvn615r24qfbpcz14";
+      rev = "8df5ca1a9db11d919f3426f4d05b281be8913c89";
+      sha256 = "0c0g9h8fajmwb2snkqj093jwc8d1ypxcvmv7s80c90l635bks1yj";
     };
   };
 
@@ -1752,12 +1752,12 @@ let
 
   neosnippet-vim = buildVimPluginFrom2Nix {
     pname = "neosnippet-vim";
-    version = "2019-05-26";
+    version = "2019-09-14";
     src = fetchFromGitHub {
       owner = "Shougo";
       repo = "neosnippet.vim";
-      rev = "ed80ae8cee732d52eb841d509a95aca9c27ece7a";
-      sha256 = "1xkq4w8mz9rfh6xpiqa1rnzd9id59d1bn58pw2fhcrm04cr3rk49";
+      rev = "3838f45930e8d6c05807c925350585c48bd21a4b";
+      sha256 = "1m6skrdjr6d1waxarxch2hn7416q9r13yan1bd7qx2w5gika606a";
     };
   };
 
@@ -2137,12 +2137,12 @@ let
 
   riv-vim = buildVimPluginFrom2Nix {
     pname = "riv-vim";
-    version = "2019-02-18";
+    version = "2019-09-14";
     src = fetchFromGitHub {
       owner = "Rykka";
       repo = "riv.vim";
-      rev = "ac64a8c8daaa862b83d27432fe87c79ad2a0c845";
-      sha256 = "0vvpp04n7ndcljrfa0m4hwvv9h20abgwr29fzv5qnasvcxcsawcq";
+      rev = "87a1f2c1e487ee0021855fd0c65c3f3244f4fc61";
+      sha256 = "13430czv87r16wcyb2f8izfihkhm2q6k1ki5bhzpbakzk7vwxwms";
     };
   };
 
@@ -3116,12 +3116,12 @@ let
 
   vim-devicons = buildVimPluginFrom2Nix {
     pname = "vim-devicons";
-    version = "2019-08-18";
+    version = "2019-09-14";
     src = fetchFromGitHub {
       owner = "ryanoasis";
       repo = "vim-devicons";
-      rev = "830f0fe48a337ed26384c43929032786f05c8d24";
-      sha256 = "06lsb8lwdbb6l0nznmxb9akd4ss9cw76d03z9h4q9yfjydyqf5kn";
+      rev = "3e67b21c6e6f955ee5051608c559c2e91c2ce3e5";
+      sha256 = "0105s1d1pn1ga2zpqi1lgjnx36plgfsniqx1b560dvmg8wglzpwx";
     };
   };
 

From 9d392dec79e065566eed05d9356581bd563149ca Mon Sep 17 00:00:00 2001
From: "Evan.Stoll" <evan.stoll@rjginc.com>
Date: Sat, 14 Sep 2019 18:20:27 -0400
Subject: [PATCH 148/152] vimPlugins.vim-illuminate: init at 2019-08-04

---
 pkgs/misc/vim-plugins/generated.nix    | 11 +++++++++++
 pkgs/misc/vim-plugins/vim-plugin-names |  1 +
 2 files changed, 12 insertions(+)

diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix
index 9e505558d5ee..5d7f1958f9fe 100644
--- a/pkgs/misc/vim-plugins/generated.nix
+++ b/pkgs/misc/vim-plugins/generated.nix
@@ -3598,6 +3598,17 @@ let
     };
   };
 
+  vim-illuminate = buildVimPluginFrom2Nix {
+    pname = "vim-illuminate";
+    version = "2019-08-04";
+    src = fetchFromGitHub {
+      owner = "RRethy";
+      repo = "vim-illuminate";
+      rev = "0c37ddf0dfbe069b9f2cf1d4a341efe7b373f133";
+      sha256 = "11zjm9a6x57s5rs080p1gcj86l01765ayn3k9yx6mx8d48n8zr3k";
+    };
+  };
+
   vim-indent-guides = buildVimPluginFrom2Nix {
     pname = "vim-indent-guides";
     version = "2018-05-14";
diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names
index 1395147ff728..73aef96caf60 100644
--- a/pkgs/misc/vim-plugins/vim-plugin-names
+++ b/pkgs/misc/vim-plugins/vim-plugin-names
@@ -324,6 +324,7 @@ rodjek/vim-puppet
 roxma/nvim-cm-racer
 roxma/nvim-completion-manager
 roxma/nvim-yarp
+RRethy/vim-illuminate
 rust-lang/rust.vim
 ryanoasis/vim-devicons
 Rykka/riv.vim

From 991c0e1618a82c5d09a030f72479d6bba4cdf468 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Vladim=C3=ADr=20=C4=8Cun=C3=A1t?= <v@cunat.cz>
Date: Sun, 15 Sep 2019 10:48:07 +0200
Subject: [PATCH 149/152] treewide: mark packages as buildable on darwin (PR
 #45364)

vcunat amended the commit a bit; see the PR for details/discussion.
---
 pkgs/applications/science/math/giac/default.nix               | 4 +---
 pkgs/applications/science/math/lrcalc/default.nix             | 2 +-
 pkgs/applications/science/math/nauty/default.nix              | 2 +-
 pkgs/applications/science/math/pynac/default.nix              | 2 +-
 pkgs/applications/science/math/singular/default.nix           | 2 +-
 pkgs/development/compilers/ecl/16.1.2.nix                     | 2 +-
 pkgs/development/libraries/arb/default.nix                    | 2 +-
 pkgs/development/libraries/fplll/default.nix                  | 2 +-
 pkgs/development/libraries/iml/default.nix                    | 2 +-
 pkgs/development/libraries/mpfi/default.nix                   | 2 +-
 pkgs/development/libraries/science/math/brial/default.nix     | 2 +-
 pkgs/development/libraries/science/math/cliquer/default.nix   | 2 +-
 pkgs/development/libraries/science/math/m4ri/default.nix      | 2 +-
 pkgs/development/libraries/science/math/m4rie/default.nix     | 2 +-
 pkgs/development/libraries/science/math/rankwidth/default.nix | 2 +-
 pkgs/development/libraries/science/math/rubiks/default.nix    | 2 +-
 pkgs/development/python-modules/cvxopt/default.nix            | 1 -
 17 files changed, 16 insertions(+), 19 deletions(-)

diff --git a/pkgs/applications/science/math/giac/default.nix b/pkgs/applications/science/math/giac/default.nix
index ad82d7572e34..90b1b367a7c4 100644
--- a/pkgs/applications/science/math/giac/default.nix
+++ b/pkgs/applications/science/math/giac/default.nix
@@ -104,9 +104,7 @@ stdenv.mkDerivation rec {
     description = "A free computer algebra system (CAS)";
     homepage = "https://www-fourier.ujf-grenoble.fr/~parisse/giac.html";
     license = licenses.gpl3Plus;
-    ## xcas is buildable on darwin but there are specific instructions I could
-    ## not test
-    platforms = platforms.linux;
+    platforms = platforms.unix;
     maintainers = [ maintainers.symphorien ];
   };
 }
diff --git a/pkgs/applications/science/math/lrcalc/default.nix b/pkgs/applications/science/math/lrcalc/default.nix
index eecb37dd743f..f407358d8f26 100644
--- a/pkgs/applications/science/math/lrcalc/default.nix
+++ b/pkgs/applications/science/math/lrcalc/default.nix
@@ -35,6 +35,6 @@ stdenv.mkDerivation rec {
     homepage = http://math.rutgers.edu/~asbuch/lrcalc/;
     license = licenses.gpl2Plus;
     maintainers = with maintainers; [ timokau ];
-    platforms = platforms.linux;
+    platforms = platforms.unix;
   };
 }
diff --git a/pkgs/applications/science/math/nauty/default.nix b/pkgs/applications/science/math/nauty/default.nix
index bd116b02e29e..e9c8b688fb92 100644
--- a/pkgs/applications/science/math/nauty/default.nix
+++ b/pkgs/applications/science/math/nauty/default.nix
@@ -37,7 +37,7 @@ stdenv.mkDerivation rec {
     description = ''Programs for computing automorphism groups of graphs and digraphs'';
     license = licenses.asl20;
     maintainers = with maintainers; [ raskin timokau ];
-    platforms = platforms.linux;
+    platforms = platforms.unix;
     homepage = http://pallini.di.uniroma1.it/;
   };
 }
diff --git a/pkgs/applications/science/math/pynac/default.nix b/pkgs/applications/science/math/pynac/default.nix
index 75a46bb182ae..05c0c0e8ec62 100644
--- a/pkgs/applications/science/math/pynac/default.nix
+++ b/pkgs/applications/science/math/pynac/default.nix
@@ -43,6 +43,6 @@ stdenv.mkDerivation rec {
     homepage    = http://pynac.org;
     license = licenses.gpl3;
     maintainers = with maintainers; [ timokau ];
-    platforms   = platforms.linux;
+    platforms   = platforms.unix;
   };
 }
diff --git a/pkgs/applications/science/math/singular/default.nix b/pkgs/applications/science/math/singular/default.nix
index ccb139203acb..fccd1489e11c 100644
--- a/pkgs/applications/science/math/singular/default.nix
+++ b/pkgs/applications/science/math/singular/default.nix
@@ -110,7 +110,7 @@ stdenv.mkDerivation rec {
     description = "A CAS for polynomial computations";
     maintainers = with maintainers; [ raskin timokau ];
     # 32 bit x86 fails with some link error: `undefined reference to `__divmoddi4@GCC_7.0.0'`
-    platforms = subtractLists platforms.i686 platforms.linux;
+    platforms = subtractLists platforms.i686 platforms.unix;
     license = licenses.gpl3; # Or GPLv2 at your option - but not GPLv4
     homepage = http://www.singular.uni-kl.de;
     downloadPage = "http://www.mathematik.uni-kl.de/ftp/pub/Math/Singular/SOURCES/";
diff --git a/pkgs/development/compilers/ecl/16.1.2.nix b/pkgs/development/compilers/ecl/16.1.2.nix
index c27f2a226705..bede9fa4aa68 100644
--- a/pkgs/development/compilers/ecl/16.1.2.nix
+++ b/pkgs/development/compilers/ecl/16.1.2.nix
@@ -78,6 +78,6 @@ stdenv.mkDerivation {
     description = "Lisp implementation aiming to be small, fast and easy to embed";
     license = stdenv.lib.licenses.mit ;
     maintainers = [stdenv.lib.maintainers.raskin];
-    platforms = stdenv.lib.platforms.linux;
+    platforms = stdenv.lib.platforms.unix;
   };
 }
diff --git a/pkgs/development/libraries/arb/default.nix b/pkgs/development/libraries/arb/default.nix
index d3e18aa776fc..0e24d556b1a5 100644
--- a/pkgs/development/libraries/arb/default.nix
+++ b/pkgs/development/libraries/arb/default.nix
@@ -21,6 +21,6 @@ stdenv.mkDerivation rec {
     description = ''A library for arbitrary-precision interval arithmetic'';
     license = stdenv.lib.licenses.lgpl21Plus;
     maintainers = with maintainers; [ raskin timokau ];
-    platforms = stdenv.lib.platforms.linux;
+    platforms = stdenv.lib.platforms.unix;
   };
 }
diff --git a/pkgs/development/libraries/fplll/default.nix b/pkgs/development/libraries/fplll/default.nix
index a70e9934520a..c2952cb47f1c 100644
--- a/pkgs/development/libraries/fplll/default.nix
+++ b/pkgs/development/libraries/fplll/default.nix
@@ -17,6 +17,6 @@ stdenv.mkDerivation rec {
     description = ''Lattice algorithms using floating-point arithmetic'';
     license = stdenv.lib.licenses.lgpl21Plus;
     maintainers = [stdenv.lib.maintainers.raskin];
-    platforms = stdenv.lib.platforms.linux;
+    platforms = stdenv.lib.platforms.unix;
   };
 }
diff --git a/pkgs/development/libraries/iml/default.nix b/pkgs/development/libraries/iml/default.nix
index 5ad3e249fc32..2b85f12115b1 100644
--- a/pkgs/development/libraries/iml/default.nix
+++ b/pkgs/development/libraries/iml/default.nix
@@ -23,7 +23,7 @@ stdenv.mkDerivation rec {
     description = ''Algorithms for computing exact solutions to dense systems of linear equations over the integers'';
     license = stdenv.lib.licenses.gpl2Plus;
     maintainers = [stdenv.lib.maintainers.raskin];
-    platforms = stdenv.lib.platforms.linux;
+    platforms = stdenv.lib.platforms.unix;
     homepage = https://cs.uwaterloo.ca/~astorjoh/iml.html;
     updateWalker = true;
   };
diff --git a/pkgs/development/libraries/mpfi/default.nix b/pkgs/development/libraries/mpfi/default.nix
index baefab487e52..fe46336649e1 100644
--- a/pkgs/development/libraries/mpfi/default.nix
+++ b/pkgs/development/libraries/mpfi/default.nix
@@ -17,6 +17,6 @@ stdenv.mkDerivation rec {
     homepage = https://gforge.inria.fr/projects/mpfi/;
     license = stdenv.lib.licenses.lgpl21Plus;
     maintainers = [stdenv.lib.maintainers.raskin];
-    platforms = stdenv.lib.platforms.linux;
+    platforms = stdenv.lib.platforms.unix;
   };
 }
diff --git a/pkgs/development/libraries/science/math/brial/default.nix b/pkgs/development/libraries/science/math/brial/default.nix
index bc276b9923c8..f08f6425655f 100644
--- a/pkgs/development/libraries/science/math/brial/default.nix
+++ b/pkgs/development/libraries/science/math/brial/default.nix
@@ -41,6 +41,6 @@ stdenv.mkDerivation rec {
     description = "Legacy version of PolyBoRi maintained by sagemath developers";
     license = licenses.gpl2Plus;
     maintainers = with maintainers; [ timokau ];
-    platforms = platforms.linux;
+    platforms = platforms.unix;
   };
 }
diff --git a/pkgs/development/libraries/science/math/cliquer/default.nix b/pkgs/development/libraries/science/math/cliquer/default.nix
index 5193c2db5c5b..08f821dcb2c9 100644
--- a/pkgs/development/libraries/science/math/cliquer/default.nix
+++ b/pkgs/development/libraries/science/math/cliquer/default.nix
@@ -33,6 +33,6 @@ stdenv.mkDerivation rec {
     '';
     license = licenses.gpl2Plus;
     maintainers = with maintainers; [ timokau ];
-    platforms = platforms.linux;
+    platforms = platforms.unix;
   };
 }
diff --git a/pkgs/development/libraries/science/math/m4ri/default.nix b/pkgs/development/libraries/science/math/m4ri/default.nix
index b8c4fa671484..764901adf7b4 100644
--- a/pkgs/development/libraries/science/math/m4ri/default.nix
+++ b/pkgs/development/libraries/science/math/m4ri/default.nix
@@ -25,6 +25,6 @@ stdenv.mkDerivation rec {
     description = "Library to do fast arithmetic with dense matrices over F_2";
     license = licenses.gpl2Plus;
     maintainers = with maintainers; [ timokau ];
-    platforms = platforms.linux;
+    platforms = platforms.unix;
   };
 }
diff --git a/pkgs/development/libraries/science/math/m4rie/default.nix b/pkgs/development/libraries/science/math/m4rie/default.nix
index 6a664b1dffff..6a91230002a0 100644
--- a/pkgs/development/libraries/science/math/m4rie/default.nix
+++ b/pkgs/development/libraries/science/math/m4rie/default.nix
@@ -34,6 +34,6 @@ stdenv.mkDerivation rec {
     '';
     license = licenses.gpl2Plus;
     maintainers = with maintainers; [ timokau ];
-    platforms = platforms.linux;
+    platforms = platforms.unix;
   };
 }
diff --git a/pkgs/development/libraries/science/math/rankwidth/default.nix b/pkgs/development/libraries/science/math/rankwidth/default.nix
index 66c573245db1..ded7b7dc90ac 100644
--- a/pkgs/development/libraries/science/math/rankwidth/default.nix
+++ b/pkgs/development/libraries/science/math/rankwidth/default.nix
@@ -22,6 +22,6 @@ stdenv.mkDerivation rec {
     description = "Calculates rank-width and rank-decompositions";
     license = with licenses; [ gpl2Plus ];
     maintainers = with maintainers; [ timokau ];
-    platforms = platforms.linux;
+    platforms = platforms.unix;
   };
 }
diff --git a/pkgs/development/libraries/science/math/rubiks/default.nix b/pkgs/development/libraries/science/math/rubiks/default.nix
index 207406388e0e..3b2ddc6f06c5 100644
--- a/pkgs/development/libraries/science/math/rubiks/default.nix
+++ b/pkgs/development/libraries/science/math/rubiks/default.nix
@@ -76,6 +76,6 @@ stdenv.mkDerivation rec {
       mit # Dik T. Winter's software
     ];
     maintainers = with maintainers; [ timokau ];
-    platforms = platforms.linux;
+    platforms = platforms.unix;
   };
 }
diff --git a/pkgs/development/python-modules/cvxopt/default.nix b/pkgs/development/python-modules/cvxopt/default.nix
index 4847d57b67b3..201c8ccda705 100644
--- a/pkgs/development/python-modules/cvxopt/default.nix
+++ b/pkgs/development/python-modules/cvxopt/default.nix
@@ -65,7 +65,6 @@ buildPythonPackage rec {
       programming language.
     '';
     maintainers = with maintainers; [ edwtjo ];
-    broken = stdenv.targetPlatform.isDarwin;
     license = licenses.gpl3Plus;
   };
 }

From 2631b963cd03ea49cd427909597212cb46841a6a Mon Sep 17 00:00:00 2001
From: "Evan.Stoll" <evan.stoll@rjginc.com>
Date: Sat, 14 Sep 2019 18:00:01 -0400
Subject: [PATCH 150/152] vimPlugins.colorizer: init at 2018-06-16

---
 pkgs/misc/vim-plugins/generated.nix    | 11 +++++++++++
 pkgs/misc/vim-plugins/vim-plugin-names |  1 +
 2 files changed, 12 insertions(+)

diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix
index 5d7f1958f9fe..c82e7dcf8d47 100644
--- a/pkgs/misc/vim-plugins/generated.nix
+++ b/pkgs/misc/vim-plugins/generated.nix
@@ -609,6 +609,17 @@ let
     };
   };
 
+  colorizer = buildVimPluginFrom2Nix {
+    pname = "colorizer";
+    version = "2018-06-16";
+    src = fetchFromGitHub {
+      owner = "lilydjwg";
+      repo = "colorizer";
+      rev = "afc1491e5b9c36305ce710bdad2b48f069141183";
+      sha256 = "1dpiv9z8h6196acncyjhzd1qa56y17468fpxbfzrx5q2266sajc7";
+    };
+  };
+
   Colour-Sampler-Pack = buildVimPluginFrom2Nix {
     pname = "Colour-Sampler-Pack";
     version = "2012-11-30";
diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names
index 73aef96caf60..67dd2db4a9f3 100644
--- a/pkgs/misc/vim-plugins/vim-plugin-names
+++ b/pkgs/misc/vim-plugins/vim-plugin-names
@@ -174,6 +174,7 @@ lepture/vim-jinja
 lervag/vimtex
 lfilho/cosco.vim
 lifepillar/vim-mucomplete
+lilydjwg/colorizer
 LnL7/vim-nix
 LucHermitte/lh-brackets
 LucHermitte/lh-vim-lib

From fa76f1f11c7021e16a57d8f4d9be2659d9345afe Mon Sep 17 00:00:00 2001
From: Jaakko Luttinen <jaakko.luttinen@iki.fi>
Date: Sun, 15 Sep 2019 09:34:39 +0300
Subject: [PATCH 151/152] pythonPackages.XlsxWriter: 1.2.0 -> 1.2.1

---
 pkgs/development/python-modules/XlsxWriter/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/XlsxWriter/default.nix b/pkgs/development/python-modules/XlsxWriter/default.nix
index b524cb0c6b3c..679725db307a 100644
--- a/pkgs/development/python-modules/XlsxWriter/default.nix
+++ b/pkgs/development/python-modules/XlsxWriter/default.nix
@@ -3,7 +3,7 @@
 buildPythonPackage rec {
 
   pname = "XlsxWriter";
-  version = "1.2.0";
+  version = "1.2.1";
 
   # PyPI release tarball doesn't contain tests so let's use GitHub. See:
   # https://github.com/jmcnamara/XlsxWriter/issues/327
@@ -11,7 +11,7 @@ buildPythonPackage rec {
     owner = "jmcnamara";
     repo = pname;
     rev = "RELEASE_${version}";
-    sha256 = "0w9ggzi887w4z6i5mz24kcy7qbkd4d7gycqi0dhqgaj9lzxh7jjh";
+    sha256 = "0br8ib9n17dfprfly93mjkhdhpndb7i4g57lwscvp2s69ssql32s";
   };
 
   meta = {

From c860babfe6a512aa7c7e83751547347a137ecd67 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Vladim=C3=ADr=20=C4=8Cun=C3=A1t?= <v@cunat.cz>
Date: Sun, 15 Sep 2019 13:17:37 +0200
Subject: [PATCH 152/152] redo-apenwarr: fixup a hard evaluation error on
 Darwin

---
 pkgs/development/tools/build-managers/redo-apenwarr/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/tools/build-managers/redo-apenwarr/default.nix b/pkgs/development/tools/build-managers/redo-apenwarr/default.nix
index 83f87ac96614..d25367c3e572 100644
--- a/pkgs/development/tools/build-managers/redo-apenwarr/default.nix
+++ b/pkgs/development/tools/build-managers/redo-apenwarr/default.nix
@@ -41,7 +41,7 @@ in stdenv.mkDerivation rec {
       --replace "/bin/ls" "ls"
 
     substituteInPlace t/110-compile/hello.o.do \
-      --replace "/usr/include" "${stdenv.cc.libc.dev}/include"
+      --replace "/usr/include" "${stdenv.lib.getDev stdenv.cc.libc}/include"
 
     substituteInPlace t/200-shell/nonshelltest.do \
       --replace "/usr/bin/env perl" "${perl}/bin/perl"