diff --git a/nixos/modules/services/web-apps/atlassian/confluence.nix b/nixos/modules/services/web-apps/atlassian/confluence.nix
index f896d92fd6fc..b71887fcc6ee 100644
--- a/nixos/modules/services/web-apps/atlassian/confluence.nix
+++ b/nixos/modules/services/web-apps/atlassian/confluence.nix
@@ -166,7 +166,7 @@ in
         ln -sf ${cfg.home}/{logs,work,temp,server.xml} /run/confluence
         ln -sf ${cfg.home} /run/confluence/home
 
-        chown -R ${cfg.user} ${cfg.home}
+        chown ${cfg.user} ${cfg.home}
 
         sed -e 's,port="8090",port="${toString cfg.listenPort}" address="${cfg.listenAddress}",' \
         '' + (lib.optionalString cfg.proxy.enable ''
diff --git a/nixos/modules/services/web-apps/atlassian/crowd.nix b/nixos/modules/services/web-apps/atlassian/crowd.nix
index b6cb9f3b7c41..9f48d1e16a44 100644
--- a/nixos/modules/services/web-apps/atlassian/crowd.nix
+++ b/nixos/modules/services/web-apps/atlassian/crowd.nix
@@ -130,9 +130,10 @@ in
         mkdir -p ${cfg.home}/{logs,database,work}
 
         mkdir -p /run/atlassian-crowd
-        ln -sf ${cfg.home}/{database,work,server.xml} /run/atlassian-crowd
+        ln -sf ${cfg.home}/{database,logs,work,server.xml} /run/atlassian-crowd
 
-        chown -R ${cfg.user}:${cfg.group} ${cfg.home}
+        chown ${cfg.user}:${cfg.group} ${cfg.home}
+        chown ${cfg.user}:${cfg.group} ${cfg.home}/{logs,database,work}
 
         sed -e 's,port="8095",port="${toString cfg.listenPort}" address="${cfg.listenAddress}",' \
         '' + (lib.optionalString cfg.proxy.enable ''
diff --git a/nixos/modules/services/web-apps/atlassian/jira.nix b/nixos/modules/services/web-apps/atlassian/jira.nix
index f5ec0a5f31b8..dba970c612bc 100644
--- a/nixos/modules/services/web-apps/atlassian/jira.nix
+++ b/nixos/modules/services/web-apps/atlassian/jira.nix
@@ -171,7 +171,7 @@ in
         ln -sf ${cfg.home}/{logs,work,temp,server.xml} /run/atlassian-jira
         ln -sf ${cfg.home} /run/atlassian-jira/home
 
-        chown -R ${cfg.user} ${cfg.home}
+        chown ${cfg.user} ${cfg.home}
 
         sed -e 's,port="8080",port="${toString cfg.listenPort}" address="${cfg.listenAddress}",' \
         '' + (lib.optionalString cfg.proxy.enable ''
diff --git a/pkgs/servers/atlassian/confluence.nix b/pkgs/servers/atlassian/confluence.nix
index 617ae3ee1d10..db80682d8993 100644
--- a/pkgs/servers/atlassian/confluence.nix
+++ b/pkgs/servers/atlassian/confluence.nix
@@ -5,15 +5,13 @@
 
 stdenv.mkDerivation rec {
   name = "atlassian-confluence-${version}";
-  version = "6.11.1";
+  version = "6.13.0";
 
   src = fetchurl {
     url = "https://www.atlassian.com/software/confluence/downloads/binary/${name}.tar.gz";
-    sha256 = "0sp1ggllvxdz0pf409yyil1x9dah1jyqspknfzgivkmwhcqj7brr";
+    sha256 = "1ckpcb0dq964gwdls5q71260r0i8zxgx8nzv8y4sizr37jvpi8mw";
   };
 
-  phases = [ "unpackPhase" "buildPhase" "installPhase" ];
-
   buildPhase = ''
     echo "confluence.home=/run/confluence/home" > confluence/WEB-INF/classes/confluence-init.properties
     mv conf/server.xml conf/server.xml.dist
diff --git a/pkgs/servers/atlassian/crowd.nix b/pkgs/servers/atlassian/crowd.nix
index 4ad0388e8db4..6bde7e187d78 100644
--- a/pkgs/servers/atlassian/crowd.nix
+++ b/pkgs/servers/atlassian/crowd.nix
@@ -3,11 +3,11 @@
 
 stdenv.mkDerivation rec {
   name = "atlassian-crowd-${version}";
-  version = "3.2.5";
+  version = "3.3.3";
 
   src = fetchurl {
     url = "https://www.atlassian.com/software/crowd/downloads/binary/${name}.tar.gz";
-    sha256 = "1h8kxh89d2wm0hkgrzx5dnnfy8sbhpgisgdwn3srhb4js8h4qil6";
+    sha256 = "1mdjxr4p56rlsgnv78bfnlwmniv8hv3hdxnfvqzsmvv88s3z7c66";
   };
 
   phases = [ "unpackPhase" "buildPhase" "installPhase" "fixupPhase" ];
@@ -16,7 +16,8 @@ stdenv.mkDerivation rec {
     mv apache-tomcat/conf/server.xml apache-tomcat/conf/server.xml.dist
     ln -s /run/atlassian-crowd/server.xml apache-tomcat/conf/server.xml
 
-    rm -rf apache-tomcat/work
+    rm -rf apache-tomcat/{logs,work}
+    ln -s /run/atlassian-crowd/logs apache-tomcat/logs
     ln -s /run/atlassian-crowd/work apache-tomcat/work
 
     ln -s /run/atlassian-crowd/database database
diff --git a/pkgs/servers/atlassian/jira.nix b/pkgs/servers/atlassian/jira.nix
index b9c5951b0b29..8e11ef6163cc 100644
--- a/pkgs/servers/atlassian/jira.nix
+++ b/pkgs/servers/atlassian/jira.nix
@@ -5,11 +5,11 @@
 
 stdenv.mkDerivation rec {
   name = "atlassian-jira-${version}";
-  version = "7.12.3";
+  version = "7.13.0";
 
   src = fetchurl {
     url = "https://downloads.atlassian.com/software/jira/downloads/atlassian-jira-software-${version}.tar.gz";
-    sha256 = "0gna0pr8g78pahm4ci14742w40f0nwfn4hpm3iwbsiw2w6vziahv";
+    sha256 = "1dra5h8lgqwzhs95br8x34c5pcrkgrkmpyhiq9vbayf1aarjxfnq";
   };
 
   phases = [ "unpackPhase" "buildPhase" "installPhase" "fixupPhase" ];