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multiqc: 1.28 -> 1.29

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Polars is now a dependencies.
Running it with nix in some configuration fails to remove temporary
directories. Before skipping this step, it retries 10 times and doubles the waiting
time each time. We set max retries to 2.
This commit is contained in:
Alexis Praga 2025-05-30 17:57:23 +02:00
parent dcb247a583
commit fd230b25b2
1 changed files with 12 additions and 2 deletions
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14
pkgs/by-name/mu/multiqc/package.nix
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@ -10,7 +10,7 @@
python3Packages.buildPythonApplication rec { python3Packages.buildPythonApplication rec {
pname = "multiqc"; pname = "multiqc";
version = "1.28"; version = "1.29";
# Two data sources. One for the code, another for the test data # Two data sources. One for the code, another for the test data
srcs = [ srcs = [
@ -19,7 +19,7 @@ python3Packages.buildPythonApplication rec {
owner = "MultiQC"; owner = "MultiQC";
repo = "MultiQC"; repo = "MultiQC";
tag = "v${version}"; tag = "v${version}";
hash = "sha256-rYZaecoVAO1RE44XCw60aVwvWhKcZ/RrG3WpVRcLbuA="; hash = "sha256-KKLdDNf889lEbCyNpJFZoE8rNO50CRzNP4hKpKHRAcE=";
}) })
(fetchFromGitHub { (fetchFromGitHub {
owner = "MultiQC"; owner = "MultiQC";
@ -30,6 +30,15 @@ python3Packages.buildPythonApplication rec {
}) })
]; ];
# Multiqc cannot remove temporary directories in some case.
# Default is 10 retries, lower it to 2
postPatch = ''
substituteInPlace multiqc/utils/util_functions.py \
--replace-fail \
"max_retries: int = 10," \
"max_retries: int = 2,"
'';
sourceRoot = "multiqc"; sourceRoot = "multiqc";
dependencies = with python3Packages; [ dependencies = with python3Packages; [
@ -43,6 +52,7 @@ python3Packages.buildPythonApplication rec {
numpy numpy
packaging packaging
requests requests
polars
pillow pillow
plotly plotly
pyyaml pyyaml